Prupe.4G095900_v2.0.a1

phosphatase 2C

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
4826029 .. 4827164
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G095900.1

Sequence Viewer

Length: 672 bp
ATGGATGACTTGGGTTTATATGCAATTTTTGATGGACATTCAGGTCGTGAAGTTGCAGAATACTTGCAATCCCATCTGTTTGATAACATATTAAATGAGCCTGATTTTTGGACAAACCCAAAACAAGCAGTCAGGAGAGCTTATAAAGCTACAAATGATGAGATTTTGGAAAAGGTAGTTGGTTCAAGAGGAGGATCGACAGCTGTTACAACAATACTAATCAATGGAGAGAAACTGATTGTAGCGAATGTCGGGGATTCTCGGGCAGTTTTATGCAGAGATGGTGTAGCAAAACAGATAACTGTGGATCACAACCCGGCGACAGAGAAGGAGAAGGATCTTGTTGAAAGCAGAGGTGGTTTTGTATTGAAAAGGCCAGGAACTGTTCCGCGTGTGGATGGCCAACTAGCTATGACAAGGGCATTTGGGGATGGAAAACTGAAGGATCACATAACTTCAGAACCAGATATAAAAGTTAAGAAGATCGACGATGAAACAGACTTCATCATTTTGGCAAGTGATGGCTTGTGGAAGGTAATGTCAAACCAAGAGGCTTACGATCGCATTGGAGAATTAGATGATGCTCAAGAAGCAGCTGAGGAGTTGATTGAAGAAGCATTATCTAGGGAAAGCTATGATGATGTCTCCTGCATAGTTGTTGTCTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

224

Amino Acids

24.68

Weight (kDa)

4.69

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34740 AT2G34740 AT2G34740
fragaria_vesca FvH4_3g10800
malus_domestica MD10G1247400.v1.1
prunus_persica Prupe.4G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0261331
rosa_wichuraiana Rw5G011290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AasI GACNNNNNNGTC 1 cut(s) 42
AccII CGCG 1 cut(s) 391
AciI CCGC 1 cut(s) 389
AclWI GGATC 4 cut(s) 202, 315, 345, 453
AcoI YGGCCR 1 cut(s) 400
AcuI CTGAAG 2 cut(s) 441, 461
AgsI TTSAA 4 cut(s) 186, 347, 370, 611
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 6 cut(s) 140, 149, 203, 410, 596, 633
AluI AGCT 6 cut(s) 140, 149, 203, 410, 596, 633
Alw26I GTCTC 1 cut(s) 649
AlwI GGATC 4 cut(s) 202, 315, 345, 453
AlwNI CAGNNNCTG 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 2 cut(s) 374, 400
ApeKI GCWGC 1 cut(s) 593
AsuC2I CCSGG 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 261
BalI TGGCCA 1 cut(s) 402
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 605
BccI CCATC 6 cut(s) 26, 81, 275, 392, 425, 515
BciT130I CCWGG 1 cut(s) 378
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 649
BfaI CTAG 2 cut(s) 407, 624
BisI GCNGC 1 cut(s) 594
BlsI GCNGC 1 cut(s) 595
Bme1390I CCNGG 2 cut(s) 317, 378
BmeT110I CYCGRG 1 cut(s) 261
BmrFI CCNGG 2 cut(s) 317, 378
BmsI GCATC 1 cut(s) 571
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 570
BpuMI CCSGG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 378
BseGI GGATG 3 cut(s) 10, 403, 436
BseMII CTCAG 1 cut(s) 588
BseRI GAGGAG 2 cut(s) 204, 614
BseXI GCAGC 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 562
BshFI GGCC 2 cut(s) 376, 402
BsiEI CGRYCG 1 cut(s) 562
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 649
BsnI GGCC 2 cut(s) 376, 402
BsoBI CYCGRG 1 cut(s) 261
Bsp143I GATC 6 cut(s) 194, 307, 337, 445, 483, 559
BspACI CCGC 1 cut(s) 389
BspANI GGCC 2 cut(s) 376, 402
BspCNI CTCAG 1 cut(s) 589
BspFNI CGCG 1 cut(s) 391
BspPI GGATC 4 cut(s) 202, 315, 345, 453
BssMI GATC 6 cut(s) 194, 307, 337, 445, 483, 559
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 304, 385
BstDEI CTNAG 1 cut(s) 597
BstF5I GGATG 3 cut(s) 10, 403, 436
BstFNI CGCG 1 cut(s) 391
BstKTI GATC 6 cut(s) 197, 310, 340, 448, 486, 562
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 6 cut(s) 194, 307, 337, 445, 483, 559
BstMCI CGRYCG 1 cut(s) 562
BstMWI GCNNNNNNNGC 2 cut(s) 146, 590
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 2 cut(s) 315, 376
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 605
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 2 cut(s) 376, 402
BtsCI GGATG 3 cut(s) 10, 403, 436
CaiI CAGNNNCTG 1 cut(s) 383
DdeI CTNAG 1 cut(s) 597
DpnI GATC 6 cut(s) 196, 309, 339, 447, 485, 561
DpnII GATC 6 cut(s) 194, 307, 337, 445, 483, 559
DrdI GACNNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 441, 461
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 594
FokI GGATG 3 cut(s) 17, 410, 443
Fsp4HI GCNGC 1 cut(s) 594
FspBI CTAG 2 cut(s) 407, 624
GluI GCNGC 1 cut(s) 594
HaeIII GGCC 2 cut(s) 376, 402
HapII CCGG 1 cut(s) 317
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 317
Hpy188I TCNGA 1 cut(s) 460
Hpy188III TCNNGA 4 cut(s) 47, 133, 186, 587
Hpy99I CGWCG 1 cut(s) 491
HpyAV CCTTC 4 cut(s) 322, 328, 436, 526
HpyCH4III ACNGT 2 cut(s) 304, 385
HpyCH4V TGCA 5 cut(s) 23, 56, 67, 276, 651
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 590
HpyF3I CTNAG 1 cut(s) 597
Kzo9I GATC 6 cut(s) 194, 307, 337, 445, 483, 559
LpnPI CCDG 8 cut(s) 27, 114, 118, 330, 363, 390, 477, 661
Lsp1109I GCAGC 1 cut(s) 605
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 407, 624
MaeIII GTNAC 1 cut(s) 205
MalI GATC 6 cut(s) 196, 309, 339, 447, 485, 561
MboI GATC 6 cut(s) 194, 307, 337, 445, 483, 559
MboII GAAGA 2 cut(s) 493, 623
MflI RGATCY 1 cut(s) 337
MlsI TGGCCA 1 cut(s) 402
MluCI AATT 2 cut(s) 24, 572
MluNI TGGCCA 1 cut(s) 402
MnlI CCTC 5 cut(s) 182, 185, 347, 544, 592
Mox20I TGGCCA 1 cut(s) 402
MscI TGGCCA 1 cut(s) 402
MseI TTAA 3 cut(s) 92, 477, 670
Msp20I TGGCCA 1 cut(s) 402
MspA1I CMGCKG 2 cut(s) 203, 596
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 317, 378
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 146, 590
NciI CCSGG 1 cut(s) 317
NdeII GATC 6 cut(s) 194, 307, 337, 445, 483, 559
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 595
Ple19I CGATCG 1 cut(s) 562
PsiI TTATAA 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 337
PvuI CGATCG 1 cut(s) 562
PvuII CAGCTG 2 cut(s) 203, 596
SaqAI TTAA 3 cut(s) 92, 477, 670
SatI GCNGC 1 cut(s) 594
Sau3AI GATC 6 cut(s) 194, 307, 337, 445, 483, 559
ScrFI CCNGG 2 cut(s) 317, 378
SfaNI GCATC 1 cut(s) 571
SmlI CTYRAG 1 cut(s) 585
SmoI CTYRAG 1 cut(s) 585
Sse9I AATT 2 cut(s) 24, 572
SsiI CCGC 1 cut(s) 389
SspMI CTAG 2 cut(s) 407, 624
StyD4I CCNGG 2 cut(s) 315, 376
TaaI ACNGT 2 cut(s) 304, 385
TaqI TCGA 2 cut(s) 197, 486
TasI AATT 2 cut(s) 24, 572
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 3 cut(s) 92, 477, 670
Tru9I TTAA 3 cut(s) 92, 477, 670
TseI GCWGC 1 cut(s) 593
TspDTI ATGAA 3 cut(s) 493, 507, 656
XspI CTAG 2 cut(s) 407, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.