Rw5G011290

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0019167
Physical Location & Seq
Forward (+)
12745507 .. 12747618
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011290.1

Sequence Viewer

Length: 732 bp
ATGAAGGCATTTTACTTGTCTAAGAAACTCTTGTATATATTCCTTAGCCAGCCATTGGTATTAAGCTTAAAAGTAAACGGCCATCAGTTGGGTTTATATGCAATCTTTGATGGCCATTCAGGTCAACAAGTTGCAGAATACTTGCAAGCTCATCTATTTGATAAAATACTAAAAGCTACTGAGAGAGCTTATAAAGCTACAGATGATGAGATTTTGGAAAAGGTAGCTGGTTCAAGAGGCGGATCTACAGCTGTTACAGCAATACTTATCAATGGAGAGATGCTAATTGTAGCCAATGTCGGCGACTCCCGGGCAGTTTTATGCAGAGATGGTGTGGCGAACCAGTTAACTGTAGATCACGACCCGCAGAAGGAGAAGGATCTTGTTGAAAGCAGATCGAGTTTGTGTTGTGATAAATTAGGAAATGTTCCACGTGTGGATGCACAACTCGCAATGTCGCGGGCATTTGGCGATGGTGACCTAAAGGAGCACATAACTTCAGAACCAGATATCAGCATCGAGAAAATCGACACTGAAGTAGACTTCATTATATTGGCAAGTGATGGTTTTTTATCTGATCATGCAGGTGATGTCGAAGTGTCGAACCAAGGTGCTTATGTTTGCATCAGAGGTATAGATGATGCTCAAGAAGCAGCAGAGAAGTTGACTCAAAAAGCATTATCCAGGAAAAGCTACGACGATATCTCTTGCATATATAGTTCTGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C RVT_3

Protein Analysis

243

Amino Acids

26.44

Weight (kDa)

4.91

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 31 - 235 4.2e-36 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34740 AT2G34740 AT2G34740
fragaria_vesca FvH4_3g10800
malus_domestica MD10G1247400.v1.1
prunus_persica Prupe.4G095900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0261331
rosa_wichuraiana Rw5G011290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AarI CACCTGC 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 575
AccB7I CCANNNNNTGG 2 cut(s) 55, 88
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 460
AciI CCGC 3 cut(s) 240, 365, 460
AclWI GGATC 2 cut(s) 250, 387
AcoI YGGCCR 2 cut(s) 79, 112
AcuI CTGAAG 2 cut(s) 483, 555
AcvI CACGTG 1 cut(s) 434
AfiI CCNNNNNNNGG 3 cut(s) 55, 88, 370
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 2 cut(s) 234, 389
AjnI CCWGG 1 cut(s) 683
AluBI AGCT 8 cut(s) 66, 149, 176, 188, 197, 227, 251, 693
AluI AGCT 8 cut(s) 66, 149, 176, 188, 197, 227, 251, 693
Alw21I GWGCWC 1 cut(s) 492
AlwI GGATC 2 cut(s) 250, 387
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 2 cut(s) 79, 112
ApeKI GCWGC 1 cut(s) 653
AsuC2I CCSGG 2 cut(s) 310, 311
AsuHPI GGTGA 2 cut(s) 488, 599
AvaI CYCGRG 1 cut(s) 309
BalI TGGCCA 1 cut(s) 114
BarI GAAGNNNNNNTAC 1 cut(s) 28
BbrPI CACGTG 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 665
BccI CCATC 5 cut(s) 90, 104, 323, 467, 557
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 685
BclI TGATCA 1 cut(s) 577
BcnI CCSGG 2 cut(s) 310, 311
BfmI CTRYAG 3 cut(s) 198, 246, 351
BfuAI ACCTGC 1 cut(s) 575
BisI GCNGC 1 cut(s) 654
BlsI GCNGC 1 cut(s) 655
Bme1390I CCNGG 3 cut(s) 310, 311, 685
BmeT110I CYCGRG 1 cut(s) 309
BmrFI CCNGG 3 cut(s) 310, 311, 685
BmsI GCATC 5 cut(s) 270, 430, 525, 631, 633
Bpu10I CCTNAGC 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 630
BpuMI CCSGG 2 cut(s) 310, 311
BsaAI YACGTR 1 cut(s) 434
BsaJI CCNNGG 2 cut(s) 309, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 88, 370
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 1 cut(s) 685
BseDI CCNNGG 2 cut(s) 309, 607
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 3 cut(s) 55, 88, 370
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 2 cut(s) 81, 114
BsiHKAI GWGCWC 1 cut(s) 492
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 3 cut(s) 55, 88, 370
BsnI GGCC 2 cut(s) 81, 114
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 5 cut(s) 242, 355, 379, 395, 577
BspACI CCGC 3 cut(s) 240, 365, 460
BspANI GGCC 2 cut(s) 81, 114
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 460
BspMI ACCTGC 1 cut(s) 575
BspPI GGATC 2 cut(s) 250, 387
BsrDI GCAATG 1 cut(s) 459
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 309, 607
BssMI GATC 5 cut(s) 242, 355, 379, 395, 577
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 1 cut(s) 685
Bst4CI ACNGT 1 cut(s) 352
BstBAI YACGTR 1 cut(s) 434
BstC8I GCNNGC 3 cut(s) 50, 147, 462
BstDEI CTNAG 3 cut(s) 21, 44, 180
BstEII GGTNACC 1 cut(s) 476
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 460
BstKTI GATC 5 cut(s) 245, 358, 382, 398, 580
BstMBI GATC 5 cut(s) 242, 355, 379, 395, 577
BstMWI GCNNNNNNNGC 4 cut(s) 194, 257, 449, 650
BstNI CCWGG 1 cut(s) 685
BstPI GGTNACC 1 cut(s) 476
BstSCI CCNGG 3 cut(s) 308, 309, 683
BstSFI CTRYAG 3 cut(s) 198, 246, 351
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 665
BstX2I RGATCY 2 cut(s) 242, 379
BstYI RGATCY 2 cut(s) 242, 379
BsuRI GGCC 2 cut(s) 81, 114
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 531
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 3 cut(s) 50, 147, 462
Cfr9I CCCGGG 1 cut(s) 309
CviAII CATG 1 cut(s) 581
DdeI CTNAG 3 cut(s) 21, 44, 180
DpnI GATC 5 cut(s) 244, 357, 381, 397, 579
DpnII GATC 5 cut(s) 242, 355, 379, 395, 577
EaeI YGGCCR 2 cut(s) 79, 112
EciI GGCGGA 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 607
Eco32I GATATC 2 cut(s) 511, 703
Eco57I CTGAAG 2 cut(s) 483, 555
Eco72I CACGTG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 309
Eco91I GGTNACC 1 cut(s) 476
EcoO65I GGTNACC 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 683
EcoRV GATATC 2 cut(s) 511, 703
EcoT14I CCWWGG 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 1 cut(s) 584
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 1 cut(s) 580
FauI CCCGC 2 cut(s) 372, 453
FbaI TGATCA 1 cut(s) 577
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 1 cut(s) 654
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 1 cut(s) 654
GluI GCNGC 1 cut(s) 654
HaeIII GGCC 2 cut(s) 81, 114
HapII CCGG 1 cut(s) 310
Hin1II CATG 1 cut(s) 584
HincII GTYRAC 3 cut(s) 125, 348, 666
HindII GTYRAC 3 cut(s) 125, 348, 666
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 2 cut(s) 305, 667
HpaI GTTAAC 1 cut(s) 348
HpaII CCGG 1 cut(s) 310
HphI GGTGA 2 cut(s) 488, 599
Hpy166II GTNNAC 5 cut(s) 76, 125, 348, 541, 666
Hpy188I TCNGA 3 cut(s) 502, 577, 629
Hpy188III TCNNGA 4 cut(s) 234, 359, 520, 647
Hpy8I GTNNAC 5 cut(s) 76, 125, 348, 541, 666
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 2 cut(s) 364, 370
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 8 cut(s) 101, 134, 145, 324, 443, 584, 624, 711
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 257, 449, 650
HpyF3I CTNAG 3 cut(s) 21, 44, 180
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 1 cut(s) 584
Ksp22I TGATCA 1 cut(s) 577
KspAI GTTAAC 1 cut(s) 348
Kzo9I GATC 5 cut(s) 242, 355, 379, 395, 577
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 1 cut(s) 665
LweI GCATC 5 cut(s) 270, 430, 525, 631, 633
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 2 cut(s) 253, 476
MalI GATC 5 cut(s) 244, 357, 381, 397, 579
MboI GATC 5 cut(s) 242, 355, 379, 395, 577
MflI RGATCY 2 cut(s) 242, 379
MhlI GDGCHC 1 cut(s) 492
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 2 cut(s) 285, 416
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 2 cut(s) 299, 661
MnlI CCTC 2 cut(s) 230, 623
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 3 cut(s) 62, 68, 347
MslI CAYNNNNRTG 1 cut(s) 585
Msp20I TGGCCA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 3 cut(s) 310, 311, 685
MvaI CCWGG 1 cut(s) 685
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 4 cut(s) 194, 257, 449, 650
NciI CCSGG 2 cut(s) 310, 311
NdeII GATC 5 cut(s) 242, 355, 379, 395, 577
NlaIII CATG 1 cut(s) 584
NmuCI GTSAC 1 cut(s) 476
PaqCI CACCTGC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 1 cut(s) 525
PflMI CCANNNNNTGG 2 cut(s) 55, 88
PfoI TCCNGGA 1 cut(s) 683
PkrI GCNGC 1 cut(s) 655
PleI GAGTC 2 cut(s) 299, 661
PmaCI CACGTG 1 cut(s) 434
PmlI CACGTG 1 cut(s) 434
PpsI GAGTC 2 cut(s) 299, 661
Ppu21I YACGTR 1 cut(s) 434
PsiI TTATAA 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 683
PspCI CACGTG 1 cut(s) 434
PspEI GGTNACC 1 cut(s) 476
PspGI CCWGG 1 cut(s) 683
PsuI RGATCY 2 cut(s) 242, 379
PvuII CAGCTG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 3 cut(s) 62, 68, 347
SatI GCNGC 1 cut(s) 654
Sau3AI GATC 5 cut(s) 242, 355, 379, 395, 577
SchI GAGTC 2 cut(s) 299, 661
ScrFI CCNGG 3 cut(s) 310, 311, 685
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 5 cut(s) 270, 430, 525, 631, 633
SfcI CTRYAG 3 cut(s) 198, 246, 351
SmaI CCCGGG 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
Sse9I AATT 2 cut(s) 285, 416
SsiI CCGC 3 cut(s) 240, 365, 460
StyD4I CCNGG 3 cut(s) 308, 309, 683
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 436
TaqI TCGA 5 cut(s) 398, 519, 528, 594, 602
TasI AATT 2 cut(s) 285, 416
Tru1I TTAA 3 cut(s) 62, 68, 347
Tru9I TTAA 3 cut(s) 62, 68, 347
TscAI CASTG 1 cut(s) 538
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 1 cut(s) 653
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 17, 535
TspMI CCCGGG 1 cut(s) 309
TspRI CASTG 1 cut(s) 538
Van91I CCANNNNNTGG 2 cut(s) 55, 88
XmaI CCCGGG 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.