FvH4_3g14030

Organic cation carnitine transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
8431836 .. 8433395
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14030.t1

Sequence Viewer

Length: 1560 bp
ATGGCTGATCCAACTTCTCTTCTGCATCAACCCAATAGAGAAGAAGATCCAGAAACTCCAAGCAACAATCTCCACCGCTCCTTGGACCAAATAATTGAGCAGAGTGAAGCAAGTTTTGGTTGGAACCAAGTCTTGCAATCCATCCTTGTTTCCTTGGCATCACTCTTTGATGGAACACAAACCTTCATCAGTGTCTACACAGATGCCACACCCACCTGGCACTGCACCAGTGACAGCACAGCCTGCAACACAAGCTCAGACATCTGCGATCTGTCTACTTCTGACTGGGCTTGGGATTCAGTTTCCTCCAAGACAATCATATCAGATTGGAACCTCCAATGCTCTAGCTCGTTCATCACTGGCCTTCCAGCCTCGTCTTTCTTCATGGGTGGCGTGGTAGGTGGGTTTCTTCTTGGCACTCTAGCTGATTCCTCGCTTGGCCGAAAGAGACTGCTAGTGATCTCTTGCATTACAATGTCTGTTGCTGCATTTGCAACAATCTTTTCTACAAATGTTTGGATTTACTCTGCATTTAGATTTGTAAGTGGCATTGGCCGTTCTTGTATTAGTACATGTGTGCTGGTTTTGTTAATGGAGAGAGTTGGAAGAAAATGGAGGCCTAGAGTTGGAATCATGCAGTTCTTCTTTTTTACACTGGGTTTTTTGTCACTACCAGCTATTGCTTACTTTAACAGAGCTAATTCATGGAGAGCTTTGTATTTATGTACATCAATTCCTGCAATGCTTTACTGCTTATTTCTCCATTTCTTTGTTAAGGAGTCTCCACGATGGCTCTTCATGAATGGCCGCGGAGAAGAAGCCATAACAGTACTGAAGAAATCTGCTGCGTCGAAGCCAATCATTAGTGAATTGAACTCATTGTTGTGTGCAGAAGGCTTGCGCTCTAAGGCAGCAGAATCTACAAAATCCAGTGATCCATACAAGTCAATGAAGGAGTTGTTTGCCAAGAAATGGGCTATGAAGAGAACACTAGTAGTCATGGTGCTTGGTTTCGGCATTGGAATGGTCTACTACGGTATGCCACTAGGGGTTGGAAACTTAGGCTTCAATATCTATCTAAGTGTTATGTTCAATGCTTTGTTAGAGATACCTTCATATCCACTCACATTGATCATACTAGAAAAATGGAGCAGGAAATTCTCAGTGCTTTGGTTTTGTTTGGTAAGTGGGATTTGTGGTGTGGTATGTGCTGTGGTGGGTGACAAGCAAAAAGTGATTAGAATTGTGCTGGAGTTGGCTTCATTCTTTTGTTCACGCACAGCTTGGAATCTGATTTCTATGTTTACAGTGGAGTTGTTCCCAACTTGTGTGAGGAACTCTGCTACATCTTTGTTGAGGCAGTCATATATTTTGAGTGCTGTGTTTAGTTCAATGTTGGTTTCAGTTGGGAGCAGCAGTGGGTTTCTTTCATATGGAGTTTTTGGAGTGGCTATATTTGTGTCTGGTTTTTTTGTGGCTTTTTTGCCAGACACTAGAGGTGGAACACTGTGTGATACCATGGATGAACAAGAAAGAAAAGAGAATATGATTTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

520

Amino Acids

57.37

Weight (kDa)

8.41

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 95 - 503 6.5e-35 Sugar (and other) transporter
MFS_1 PF07690 116 - 458 1.8e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017263)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14030
malus_domestica MD05G1238600.v1.1
prunus_persica Prupe.4G127600_v2.0.a1
pyrus_communis pycom05g21470
rosa_chinensis RchiOBHm_Chr5g0023351
rosa_laevigata RLG00000032715
rosa_multiflora Rmu_co8449133.1_g000001
rosa_roxburghii Rroxscaffold_1G00055990
rosa_rugosa Rorug05G0078600
rosa_samantha Rh5AG165200 Rh5CG179500 Rh5DG166100
rosa_wichuraiana Rw5G014880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 972
AccBSI CCGCTC 1 cut(s) 78
AccI GTMKAC 3 cut(s) 195, 275, 1029
AccII CGCG 1 cut(s) 810
AciI CCGC 3 cut(s) 76, 808, 810
AclWI GGATC 3 cut(s) 2, 41, 929
AcoI YGGCCR 3 cut(s) 439, 553, 805
AcsI RAATTY 1 cut(s) 1157
AcuI CTGAAG 1 cut(s) 854
AdeI CACNNNGTG 1 cut(s) 1511
AfaI GTAC 3 cut(s) 571, 727, 831
AfiI CCNNNNNNNGG 3 cut(s) 82, 626, 972
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 4 cut(s) 874, 1069, 1093, 1392
AhlI ACTAGT 1 cut(s) 991
AjnI CCWGG 1 cut(s) 215
AjuI GAANNNNNNNTTGG 3 cut(s) 99, 131, 1535
AluBI AGCT 7 cut(s) 255, 348, 425, 677, 698, 713, 1283
AluI AGCT 7 cut(s) 255, 348, 425, 677, 698, 713, 1283
Alw26I GTCTC 2 cut(s) 442, 786
AlwI GGATC 3 cut(s) 2, 41, 929
AoxI GGCC 5 cut(s) 361, 439, 553, 617, 805
ApeKI GCWGC 4 cut(s) 485, 845, 911, 1413
ApoI RAATTY 1 cut(s) 1157
AspLEI GCGC 1 cut(s) 903
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 1232
AvaII GGWCC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 472, 832, 923, 1425
BccI CCATC 3 cut(s) 149, 164, 783
BceAI ACGGC 1 cut(s) 540
BciT130I CCWGG 1 cut(s) 217
BclI TGATCA 1 cut(s) 1131
BcoDI GTCTC 2 cut(s) 442, 786
BcuI ACTAGT 1 cut(s) 991
BfaI CTAG 8 cut(s) 345, 422, 455, 621, 992, 1046, 1139, 1494
BisI GCNGC 5 cut(s) 486, 808, 846, 912, 1414
BlsI GCNGC 5 cut(s) 487, 809, 847, 913, 1415
BmcAI AGTACT 1 cut(s) 831
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 125, 332
BmrFI CCNGG 1 cut(s) 217
BmrI ACTGGG 2 cut(s) 295, 665
BmsI GCATC 3 cut(s) 34, 167, 193
BmuI ACTGGG 2 cut(s) 295, 665
BpmI CTGGAG 1 cut(s) 1271
BsaJI CCNNGG 4 cut(s) 81, 153, 808, 1518
BsaXI ACNNNNNCTCC 2 cut(s) 1402, 1432
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 626, 972
Bse1I ACTGG 5 cut(s) 228, 290, 364, 660, 930
Bse3DI GCAATG 1 cut(s) 747
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 4 cut(s) 81, 153, 808, 1518
BseGI GGATG 2 cut(s) 141, 1528
BseLI CCNNNNNNNGG 3 cut(s) 82, 626, 972
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 2 cut(s) 270, 1176
BseNI ACTGG 5 cut(s) 228, 290, 364, 660, 930
BseXI GCAGC 4 cut(s) 472, 832, 923, 1425
BsgI GTGCAG 2 cut(s) 208, 909
Bsh1236I CGCG 1 cut(s) 810
BshFI GGCC 5 cut(s) 363, 441, 555, 619, 807
BslI CCNNNNNNNGG 3 cut(s) 82, 626, 972
BsmAI GTCTC 2 cut(s) 442, 786
BsnI GGCC 5 cut(s) 363, 441, 555, 619, 807
Bsp1407I TGTACA 1 cut(s) 725
Bsp143I GATC 6 cut(s) 7, 46, 268, 459, 934, 1131
Bsp19I CCATGG 1 cut(s) 1518
BspACI CCGC 3 cut(s) 76, 808, 810
BspANI GGCC 5 cut(s) 363, 441, 555, 619, 807
BspCNI CTCAG 2 cut(s) 269, 1175
BspFNI CGCG 1 cut(s) 810
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 2 cut(s) 125, 332
BspPI GGATC 3 cut(s) 2, 41, 929
BspQI GCTCTTC 1 cut(s) 800
BsrBI CCGCTC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 747
BsrGI TGTACA 1 cut(s) 725
BsrI ACTGG 5 cut(s) 228, 290, 364, 660, 930
BssECI CCNNGG 4 cut(s) 81, 153, 808, 1518
BssMI GATC 6 cut(s) 7, 46, 268, 459, 934, 1131
BssT1I CCWWGG 3 cut(s) 81, 153, 1518
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 4 cut(s) 829, 1037, 1309, 1509
Bst6I CTCTTC 3 cut(s) 24, 800, 977
BstAPI GCANNNNNTGC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 725
BstC8I GCNNGC 2 cut(s) 244, 899
BstDEI CTNAG 5 cut(s) 256, 906, 1060, 1079, 1162
BstDSI CCRYGG 2 cut(s) 808, 1518
BstF5I GGATG 2 cut(s) 141, 1528
BstFNI CGCG 1 cut(s) 810
BstHHI GCGC 1 cut(s) 903
BstKTI GATC 6 cut(s) 10, 49, 271, 462, 937, 1134
BstMAI GTCTC 2 cut(s) 442, 786
BstMBI GATC 6 cut(s) 7, 46, 268, 459, 934, 1131
BstMWI GCNNNNNNNGC 3 cut(s) 243, 252, 491
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 215
BstUI CGCG 1 cut(s) 810
BstV1I GCAGC 4 cut(s) 472, 832, 923, 1425
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 5 cut(s) 363, 441, 555, 619, 807
BtgI CCRYGG 2 cut(s) 808, 1518
BtsCI GGATG 2 cut(s) 141, 1528
BtsI GCAGTG 2 cut(s) 220, 1423
Cac8I GCNNGC 2 cut(s) 244, 899
CciI TCATGA 1 cut(s) 798
CfoI GCGC 1 cut(s) 903
Cfr13I GGNCC 1 cut(s) 85
Cfr42I CCGCGG 1 cut(s) 811
CseI GACGC 1 cut(s) 837
Csp6I GTAC 3 cut(s) 570, 726, 830
CspCI CAANNNNNGTGG 2 cut(s) 1110, 1145
CviAII CATG 7 cut(s) 385, 573, 634, 705, 799, 1000, 1519
CviQI GTAC 3 cut(s) 570, 726, 830
DdeI CTNAG 5 cut(s) 256, 906, 1060, 1079, 1162
DpnI GATC 6 cut(s) 9, 48, 270, 461, 936, 1133
DpnII GATC 6 cut(s) 7, 46, 268, 459, 934, 1131
DraIII CACNNNGTG 1 cut(s) 1511
EaeI YGGCCR 3 cut(s) 439, 553, 805
Eam1104I CTCTTC 3 cut(s) 24, 800, 977
EarI CTCTTC 3 cut(s) 24, 800, 977
Eco130I CCWWGG 3 cut(s) 81, 153, 1518
Eco147I AGGCCT 1 cut(s) 619
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 854
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 3 cut(s) 81, 153, 1518
ErhI CCWWGG 3 cut(s) 81, 153, 1518
FaeI CATG 7 cut(s) 388, 576, 637, 708, 802, 1003, 1522
FatI CATG 7 cut(s) 384, 572, 633, 704, 798, 999, 1518
FauNDI CATATG 1 cut(s) 1432
FbaI TGATCA 1 cut(s) 1131
FblI GTMKAC 3 cut(s) 195, 275, 1029
Fnu4HI GCNGC 5 cut(s) 486, 808, 846, 912, 1414
FokI GGATG 2 cut(s) 128, 1535
Fsp4HI GCNGC 5 cut(s) 486, 808, 846, 912, 1414
FspBI CTAG 8 cut(s) 345, 422, 455, 621, 992, 1046, 1139, 1494
GlaI GCGC 1 cut(s) 902
GluI GCNGC 5 cut(s) 486, 808, 846, 912, 1414
GsuI CTGGAG 1 cut(s) 1271
HaeIII GGCC 5 cut(s) 363, 441, 555, 619, 807
HgaI GACGC 1 cut(s) 837
HhaI GCGC 1 cut(s) 903
Hin1II CATG 7 cut(s) 388, 576, 637, 708, 802, 1003, 1522
Hin6I GCGC 1 cut(s) 901
HinP1I GCGC 1 cut(s) 901
HinfI GANTC 6 cut(s) 296, 428, 630, 779, 917, 1288
HphI GGTGA 1 cut(s) 1232
Hpy166II GTNNAC 5 cut(s) 196, 276, 1030, 1274, 1305
Hpy188I TCNGA 4 cut(s) 259, 283, 325, 1293
Hpy188III TCNNGA 2 cut(s) 50, 799
Hpy8I GTNNAC 5 cut(s) 196, 276, 1030, 1274, 1305
Hpy99I CGWCG 1 cut(s) 853
HpyAV CCTTC 5 cut(s) 193, 374, 887, 946, 1122
HpyCH4III ACNGT 4 cut(s) 829, 1037, 1309, 1509
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 252, 491
HpyF3I CTNAG 5 cut(s) 256, 906, 1060, 1079, 1162
Hsp92II CATG 7 cut(s) 388, 576, 637, 708, 802, 1003, 1522
HspAI GCGC 1 cut(s) 901
Ksp22I TGATCA 1 cut(s) 1131
KspI CCGCGG 1 cut(s) 811
Kzo9I GATC 6 cut(s) 7, 46, 268, 459, 934, 1131
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 3 cut(s) 83, 1149, 1410
Lsp1109I GCAGC 4 cut(s) 472, 832, 923, 1425
LweI GCATC 3 cut(s) 34, 167, 193
MaeI CTAG 8 cut(s) 345, 422, 455, 621, 992, 1046, 1139, 1494
MaeIII GTNAC 3 cut(s) 230, 666, 1220
MalI GATC 6 cut(s) 9, 48, 270, 461, 936, 1133
MbiI CCGCTC 1 cut(s) 78
MboI GATC 6 cut(s) 7, 46, 268, 459, 934, 1131
MflI RGATCY 1 cut(s) 46
MluCI AATT 6 cut(s) 93, 700, 732, 869, 1157, 1242
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 5 cut(s) 35, 101, 583, 607, 1033
MnlI CCTC 8 cut(s) 316, 344, 382, 442, 609, 1326, 1350, 1490
MseI TTAA 3 cut(s) 590, 690, 774
MslI CAYNNNNRTG 3 cut(s) 473, 883, 1022
MspA1I CMGCKG 1 cut(s) 810
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 810
MwoI GCNNNNNNNGC 3 cut(s) 243, 252, 491
NcoI CCATGG 1 cut(s) 1518
NdeI CATATG 1 cut(s) 1432
NdeII GATC 6 cut(s) 7, 46, 268, 459, 934, 1131
NlaIII CATG 7 cut(s) 388, 576, 637, 708, 802, 1003, 1522
NlaIV GGNNCC 2 cut(s) 125, 332
NmuCI GTSAC 3 cut(s) 230, 666, 1220
NspI RCATGY 1 cut(s) 576
PagI TCATGA 1 cut(s) 798
PceI AGGCCT 1 cut(s) 619
PciI ACATGT 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 800
PfeI GAWTC 5 cut(s) 296, 428, 630, 917, 1288
PflMI CCANNNNNTGG 1 cut(s) 972
PkrI GCNGC 5 cut(s) 487, 809, 847, 913, 1415
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
PscI ACATGT 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 125, 332
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 3 cut(s) 571, 727, 831
RsaNI GTAC 3 cut(s) 570, 726, 830
RseI CAYNNNNRTG 3 cut(s) 473, 883, 1022
SacII CCGCGG 1 cut(s) 811
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 3 cut(s) 590, 690, 774
SatI GCNGC 5 cut(s) 486, 808, 846, 912, 1414
Sau3AI GATC 6 cut(s) 7, 46, 268, 459, 934, 1131
Sau96I GGNCC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 831
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 1 cut(s) 217
SfaNI GCATC 3 cut(s) 34, 167, 193
Sfr303I CCGCGG 1 cut(s) 811
SgrBI CCGCGG 1 cut(s) 811
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 3 cut(s) 473, 883, 1022
SpeI ACTAGT 1 cut(s) 991
Sse9I AATT 6 cut(s) 93, 700, 732, 869, 1157, 1242
SseBI AGGCCT 1 cut(s) 619
SsiI CCGC 3 cut(s) 76, 808, 810
SspMI CTAG 8 cut(s) 345, 422, 455, 621, 992, 1046, 1139, 1494
StuI AGGCCT 1 cut(s) 619
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 3 cut(s) 81, 153, 1518
TaaI ACNGT 4 cut(s) 829, 1037, 1309, 1509
TaqI TCGA 1 cut(s) 851
TasI AATT 6 cut(s) 93, 700, 732, 869, 1157, 1242
TatI WGTACW 3 cut(s) 569, 725, 829
TauI GCSGC 1 cut(s) 810
TfiI GAWTC 5 cut(s) 296, 428, 630, 917, 1288
Tru1I TTAA 3 cut(s) 590, 690, 774
Tru9I TTAA 3 cut(s) 590, 690, 774
TseFI GTSAC 3 cut(s) 230, 666, 1220
TseI GCWGC 4 cut(s) 485, 845, 911, 1413
Tsp45I GTSAC 3 cut(s) 230, 666, 1220
Van91I CCANNNNNTGG 1 cut(s) 972
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 1 cut(s) 1157
XceI RCATGY 1 cut(s) 576
XmiI GTMKAC 3 cut(s) 195, 275, 1029
XspI CTAG 8 cut(s) 345, 422, 455, 621, 992, 1046, 1139, 1494
ZrmI AGTACT 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.