MD05G1238600.v1.1

Organic cation carnitine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0017263
Physical Location & Seq
Forward (+)
36981825 .. 36983372
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1238600.v1.1.491

Sequence Viewer

Length: 1548 bp
ATGGCTGATCCAACCCCTTTTGGCCTTGATCCAAACATGGAAGACCCAGAAACTCTGAGGACCAATCTCCTCAATTCCTTGGATCAAATAATTGAGCAAAATCAATCAAGTTTTGGGTGGAAACAATTCCTCCAAGCCATCCTTGTCTCTTTGGCATCACTCTTTGATGGTCAACAAACCTTCATCAGTGTCTACACAGATGCAATCCCTACATGGCACTGCTCCACCACCACCACCACCTCATGCACCACAAACTCCAACATCTGTGACCTGGCCGACTCCGATTGGTCCTGGGATTCAACTTCCTCCACCACAATCATATCTGATTGGAGCCTCCAATGCTCTAGCTCATTCATCAGAGGCCTCCCTGCCTCCTCCTACTTCATGGGCGGTGTGGTTGGTGGGCTCCTTCTAGGAACCCTAGCTGACTCCTCACTCGGTCGCAAGAAGCTCCTCTTGATCTCTTGTGTAACGATGTCCTTAGCTTCGTTTATCACCATTTTCTCGCCAAACGTTTGGGTTTACTCAGCAGTCAGATTCATAAGCGGGGTCGGCCGCTCCTCAATTAGTACATGTGTTCTTGTCTTGCTGATGGAAAAAGTTGGGAAGAAATGGAGGCCTAGAGTGGGAATCATGCAGTTTTTTTTTTTTACTCTCGGGTTTTTGTCACTACCACTGATTGCTTATCTCAACAGAGCTAACTCATGGAGAGCCCTGTACTTGTGCACTTCGATTCCTGCAGTTTTATACTGCTTACTGCTTCAGTTCTTTGTCAGCGAGTCTCCGAGATGGCTGTTCAAGAACGGTAAAAGAGAGGAAGCTGTAGCGATACTGTTGAAATCTGCCGGACAAAATTACCCAAGTGAGTTAAAATTGTTGTTGGTCTCATCTCATGAGGTGGAGGTCGACTCTTCAAATGTCAGTGATCATCCGTACAAGTCAATGAAGGACTTGTTTGCAAAAAGATGGGCTATGAAGAGAACCCTGACGGTAATGGTACTAGGGTTTGGAATCGGAATGGTGTACTATGGAATGCCATTAGGGGTTGGAAATTTGGGGTTTAACATTTATTTGAGTGTTATGTTTAATGCTTTGTTAGAAATACCCTCGTATCCAATTACTTGCATTATATTGGAAAGATGGAGCAGGAAATTTTCAGTGCTCGGATTTTGTTTAGTGAGTGGAATTTGTGGAATTGTATGTGCAGTTGCAGGGCAAAAGGGGGTGAGAATTGGGTTGGAATTGGCTTCTTTCTTTTGCTCACGGACGGCTTGGAATCTGATTTCTATGTTCACAGTTGAGTTGTTTCCGACTTGTGTGAGGAACTCTGCTACATCTTTGCTGCGGCAGTCTTATGTGTTGAGTGCTGTTTTTAGCTCGATGTTGGTTTCTGTTGGGAGCAGCAATGAGTTTCTTTCTTACGGCGTGTTTGGATTGGCTATATTTTTTTCTGGATTTTTTGTGGGATTTTTACCGGATACAAGAGGTGGAATGCTTTGTGACACCATGGATGAACAAGAACGCAAAGAGAATATGATTTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05231 map05231
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

516

Amino Acids

57.04

Weight (kDa)

8.11

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 100 - 496 1.2e-33 Sugar (and other) transporter
MFS_1 PF07690 121 - 458 1.5e-25 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017263)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14030
malus_domestica MD05G1238600.v1.1
prunus_persica Prupe.4G127600_v2.0.a1
pyrus_communis pycom05g21470
rosa_chinensis RchiOBHm_Chr5g0023351
rosa_laevigata RLG00000032715
rosa_multiflora Rmu_co8449133.1_g000001
rosa_roxburghii Rroxscaffold_1G00055990
rosa_rugosa Rorug05G0078600
rosa_samantha Rh5AG165200 Rh5CG179500 Rh5DG166100
rosa_wichuraiana Rw5G014880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 558
AccI GTMKAC 2 cut(s) 192, 906
AciI CCGC 4 cut(s) 390, 546, 556, 1345
AclI AACGTT 1 cut(s) 513
AclWI GGATC 3 cut(s) 2, 23, 90
AcoI YGGCCR 2 cut(s) 273, 553
AcsI RAATTY 3 cut(s) 1051, 1151, 1185
AcuI CTGAAG 1 cut(s) 746
AfaI GTAC 5 cut(s) 571, 719, 935, 999, 1025
AfiI CCNNNNNNNGG 1 cut(s) 626
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 4 cut(s) 300, 799, 838, 915
AjnI CCWGG 2 cut(s) 270, 290
AluBI AGCT 7 cut(s) 348, 425, 451, 485, 698, 821, 1377
AluI AGCT 7 cut(s) 348, 425, 451, 485, 698, 821, 1377
Alw21I GWGCWC 2 cut(s) 728, 1164
Alw26I GTCTC 3 cut(s) 151, 786, 889
Alw44I GTGCAC 1 cut(s) 724
AlwI GGATC 3 cut(s) 2, 23, 90
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 5 cut(s) 22, 273, 361, 553, 617
ApaLI GTGCAC 1 cut(s) 724
ApeKI GCWGC 2 cut(s) 1342, 1401
ApoI RAATTY 3 cut(s) 1051, 1151, 1185
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 60, 288
AsuHPI GGTGA 2 cut(s) 487, 1237
AvaI CYCGRG 1 cut(s) 656
AvaII GGWCC 2 cut(s) 60, 288
BaeGI GKGCMC 1 cut(s) 728
BaeI ACNNNNGTAYC 4 cut(s) 989, 1022, 1094, 1127
BanII GRGCYC 2 cut(s) 408, 715
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 2 cut(s) 728, 1164
BbvI GCAGC 2 cut(s) 1329, 1413
BccI CCATC 6 cut(s) 146, 161, 586, 783, 960, 1134
BceAI ACGGC 2 cut(s) 1284, 1438
BciT130I CCWGG 2 cut(s) 272, 292
BciVI GTATCC 2 cut(s) 1122, 1471
BclI TGATCA 1 cut(s) 925
BcoDI GTCTC 3 cut(s) 151, 786, 889
BfaI CTAG 5 cut(s) 345, 413, 422, 621, 1001
BfmI CTRYAG 2 cut(s) 738, 822
BfuI GTATCC 2 cut(s) 1122, 1471
BisI GCNGC 4 cut(s) 556, 1343, 1346, 1402
BlsI GCNGC 4 cut(s) 557, 1344, 1347, 1403
Bme1390I CCNGG 2 cut(s) 272, 292
Bme18I GGWCC 2 cut(s) 60, 288
BmeT110I CYCGRG 1 cut(s) 656
BmgT120I GGNCC 2 cut(s) 60, 288
BmiI GGNNCC 3 cut(s) 332, 407, 418
BmrFI CCNGG 2 cut(s) 272, 292
BmsI GCATC 2 cut(s) 164, 190
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 893, 925
Bpu10I CCTNAGC 1 cut(s) 481
BsaI GGTCTC 1 cut(s) 889
BsaJI CCNNGG 3 cut(s) 78, 291, 1506
BsaWI WCCGGW 1 cut(s) 1474
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 1411
BseBI CCWGG 2 cut(s) 272, 292
BseDI CCNNGG 3 cut(s) 78, 291, 1506
BseGI GGATG 3 cut(s) 138, 928, 1516
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMI GCAATG 1 cut(s) 1411
BseMII CTCAG 2 cut(s) 47, 540
BseRI GAGGAG 5 cut(s) 59, 364, 421, 443, 550
BseSI GKGCMC 1 cut(s) 728
BseX3I CGGCCG 1 cut(s) 553
BseXI GCAGC 2 cut(s) 1329, 1413
BsgI GTGCAG 1 cut(s) 1224
Bsh1285I CGRYCG 2 cut(s) 442, 556
BshFI GGCC 5 cut(s) 24, 275, 363, 555, 619
BsiEI CGRYCG 2 cut(s) 442, 556
BsiHKAI GWGCWC 2 cut(s) 728, 1164
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 2 cut(s) 846, 1475
BslI CCNNNNNNNGG 1 cut(s) 626
BsmAI GTCTC 3 cut(s) 151, 786, 889
BsmI GAATGC 2 cut(s) 1038, 1497
BsnI GGCC 5 cut(s) 24, 275, 363, 555, 619
Bso31I GGTCTC 1 cut(s) 889
BsoBI CYCGRG 1 cut(s) 656
Bsp1286I GDGCHC 4 cut(s) 408, 715, 728, 1164
Bsp143I GATC 5 cut(s) 7, 28, 82, 459, 925
Bsp19I CCATGG 1 cut(s) 1506
BspACI CCGC 4 cut(s) 390, 546, 556, 1345
BspANI GGCC 5 cut(s) 24, 275, 363, 555, 619
BspCNI CTCAG 2 cut(s) 48, 539
BspHI TCATGA 1 cut(s) 892
BspLI GGNNCC 3 cut(s) 332, 407, 418
BspMAI CTGCAG 1 cut(s) 742
BspPI GGATC 3 cut(s) 2, 23, 90
BspTNI GGTCTC 1 cut(s) 889
BsrBI CCGCTC 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 1411
BssECI CCNNGG 3 cut(s) 78, 291, 1506
BssMI GATC 5 cut(s) 7, 28, 82, 459, 925
BssT1I CCWWGG 2 cut(s) 78, 1506
Bst2UI CCWGG 2 cut(s) 272, 292
Bst4CI ACNGT 4 cut(s) 806, 834, 991, 1297
Bst6I CTCTTC 2 cut(s) 916, 971
BstDEI CTNAG 3 cut(s) 56, 481, 526
BstDSI CCRYGG 1 cut(s) 1506
BstF5I GGATG 3 cut(s) 138, 928, 1516
BstKTI GATC 5 cut(s) 10, 31, 85, 462, 928
BstMAI GTCTC 3 cut(s) 151, 786, 889
BstMBI GATC 5 cut(s) 7, 28, 82, 459, 925
BstMCI CGRYCG 2 cut(s) 442, 556
BstMWI GCNNNNNNNGC 2 cut(s) 339, 552
BstNI CCWGG 2 cut(s) 272, 292
BstNSI RCATGY 1 cut(s) 576
BstSCI CCNGG 2 cut(s) 270, 290
BstSFI CTRYAG 2 cut(s) 738, 822
BstSLI GKGCMC 1 cut(s) 728
BstV1I GCAGC 2 cut(s) 1329, 1413
BstV2I GAAGAC 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 516
BstZI CGGCCG 1 cut(s) 553
BsuI GTATCC 2 cut(s) 1122, 1471
BsuRI GGCC 5 cut(s) 24, 275, 363, 555, 619
BtgI CCRYGG 1 cut(s) 1506
BtsCI GGATG 3 cut(s) 138, 928, 1516
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 5 cut(s) 193, 217, 674, 928, 1164
CciI TCATGA 1 cut(s) 892
Cfr13I GGNCC 2 cut(s) 60, 288
Csp6I GTAC 5 cut(s) 570, 718, 934, 998, 1024
CviAII CATG 9 cut(s) 37, 213, 243, 385, 573, 634, 705, 893, 1507
CviQI GTAC 5 cut(s) 570, 718, 934, 998, 1024
DdeI CTNAG 3 cut(s) 56, 481, 526
DpnI GATC 5 cut(s) 9, 30, 84, 461, 927
DpnII GATC 5 cut(s) 7, 28, 82, 459, 925
EaeI YGGCCR 2 cut(s) 273, 553
EagI CGGCCG 1 cut(s) 553
Eam1104I CTCTTC 2 cut(s) 916, 971
EarI CTCTTC 2 cut(s) 916, 971
EclXI CGGCCG 1 cut(s) 553
Eco130I CCWWGG 2 cut(s) 78, 1506
Eco147I AGGCCT 2 cut(s) 363, 619
Eco24I GRGCYC 2 cut(s) 408, 715
Eco31I GGTCTC 1 cut(s) 889
Eco47I GGWCC 2 cut(s) 60, 288
Eco52I CGGCCG 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 746
Eco88I CYCGRG 1 cut(s) 656
EcoRII CCWGG 2 cut(s) 270, 290
EcoT14I CCWWGG 2 cut(s) 78, 1506
EcoT38I GRGCYC 2 cut(s) 408, 715
ErhI CCWWGG 2 cut(s) 78, 1506
FaeI CATG 9 cut(s) 40, 216, 246, 388, 576, 637, 708, 896, 1510
FalI AAGNNNNNCTT 4 cut(s) 126, 158, 440, 472
FatI CATG 9 cut(s) 36, 212, 242, 384, 572, 633, 704, 892, 1506
FauI CCCGC 1 cut(s) 539
FbaI TGATCA 1 cut(s) 925
FblI GTMKAC 2 cut(s) 192, 906
Fnu4HI GCNGC 4 cut(s) 556, 1343, 1346, 1402
FokI GGATG 3 cut(s) 125, 915, 1523
FriOI GRGCYC 2 cut(s) 408, 715
Fsp4HI GCNGC 4 cut(s) 556, 1343, 1346, 1402
FspBI CTAG 5 cut(s) 345, 413, 422, 621, 1001
GluI GCNGC 4 cut(s) 556, 1343, 1346, 1402
HaeIII GGCC 5 cut(s) 24, 275, 363, 555, 619
HapII CCGG 2 cut(s) 846, 1475
Hin1II CATG 9 cut(s) 40, 216, 246, 388, 576, 637, 708, 896, 1510
HincII GTYRAC 2 cut(s) 173, 907
HindII GTYRAC 2 cut(s) 173, 907
HpaII CCGG 2 cut(s) 846, 1475
HphI GGTGA 2 cut(s) 487, 1237
Hpy166II GTNNAC 7 cut(s) 173, 193, 523, 726, 907, 1024, 1293
Hpy188III TCNNGA 4 cut(s) 457, 799, 893, 1452
Hpy8I GTNNAC 7 cut(s) 173, 193, 523, 726, 907, 1024, 1293
HpyAV CCTTC 3 cut(s) 190, 419, 940
HpyCH4III ACNGT 4 cut(s) 806, 834, 991, 1297
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 9 cut(s) 203, 246, 637, 726, 740, 959, 1125, 1205, 1211
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 552
HpyF3I CTNAG 3 cut(s) 56, 481, 526
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 9 cut(s) 40, 216, 246, 388, 576, 637, 708, 896, 1510
Ksp22I TGATCA 1 cut(s) 925
Kzo9I GATC 5 cut(s) 7, 28, 82, 459, 925
LmnI GCTCC 7 cut(s) 227, 330, 411, 456, 563, 1143, 1398
Lsp1109I GCAGC 2 cut(s) 1329, 1413
LweI GCATC 2 cut(s) 164, 190
MaeI CTAG 5 cut(s) 345, 413, 422, 621, 1001
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 4 cut(s) 266, 469, 666, 1499
MalI GATC 5 cut(s) 9, 30, 84, 461, 927
MbiI CCGCTC 1 cut(s) 558
MboI GATC 5 cut(s) 7, 28, 82, 459, 925
MboII GAAGA 4 cut(s) 53, 619, 903, 988
MhlI GDGCHC 4 cut(s) 408, 715, 728, 1164
MlyI GAGTC 4 cut(s) 272, 422, 788, 902
MmeI TCCRAC 5 cut(s) 35, 282, 1027, 1218, 1334
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 3 cut(s) 869, 1062, 1086
MspI CCGG 2 cut(s) 846, 1475
MspR9I CCNGG 2 cut(s) 272, 292
Mva1269I GAATGC 2 cut(s) 1038, 1497
MvaI CCWGG 2 cut(s) 272, 292
MwoI GCNNNNNNNGC 2 cut(s) 339, 552
NcoI CCATGG 1 cut(s) 1506
NdeII GATC 5 cut(s) 7, 28, 82, 459, 925
NlaIII CATG 9 cut(s) 40, 216, 246, 388, 576, 637, 708, 896, 1510
NlaIV GGNNCC 3 cut(s) 332, 407, 418
NmuCI GTSAC 3 cut(s) 266, 666, 1499
NspI RCATGY 1 cut(s) 576
PagI TCATGA 1 cut(s) 892
PceI AGGCCT 2 cut(s) 363, 619
PciI ACATGT 1 cut(s) 572
PctI GAATGC 2 cut(s) 1038, 1497
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 6 cut(s) 296, 537, 630, 733, 1011, 1276
PkrI GCNGC 4 cut(s) 557, 1344, 1347, 1403
PleI GAGTC 4 cut(s) 272, 422, 787, 902
PpsI GAGTC 4 cut(s) 272, 422, 787, 902
PscI ACATGT 1 cut(s) 572
Psp1406I AACGTT 1 cut(s) 513
Psp6I CCWGG 2 cut(s) 270, 290
PspGI CCWGG 2 cut(s) 270, 290
PspN4I GGNNCC 3 cut(s) 332, 407, 418
PspPI GGNCC 2 cut(s) 60, 288
PstI CTGCAG 1 cut(s) 742
RsaI GTAC 5 cut(s) 571, 719, 935, 999, 1025
RsaNI GTAC 5 cut(s) 570, 718, 934, 998, 1024
SalI GTCGAC 1 cut(s) 905
SaqAI TTAA 3 cut(s) 869, 1062, 1086
SatI GCNGC 4 cut(s) 556, 1343, 1346, 1402
Sau3AI GATC 5 cut(s) 7, 28, 82, 459, 925
Sau96I GGNCC 2 cut(s) 60, 288
SchI GAGTC 4 cut(s) 272, 422, 788, 902
ScrFI CCNGG 2 cut(s) 272, 292
SduI GDGCHC 4 cut(s) 408, 715, 728, 1164
SfaNI GCATC 2 cut(s) 164, 190
SfcI CTRYAG 2 cut(s) 738, 822
SinI GGWCC 2 cut(s) 60, 288
SseBI AGGCCT 2 cut(s) 363, 619
SsiI CCGC 4 cut(s) 390, 546, 556, 1345
SspMI CTAG 5 cut(s) 345, 413, 422, 621, 1001
StuI AGGCCT 2 cut(s) 363, 619
StyD4I CCNGG 2 cut(s) 270, 290
StyI CCWWGG 2 cut(s) 78, 1506
TaaI ACNGT 4 cut(s) 806, 834, 991, 1297
TaiI ACGT 1 cut(s) 516
TaqI TCGA 3 cut(s) 731, 906, 1379
TaqII GACCGA 1 cut(s) 428
TatI WGTACW 3 cut(s) 569, 717, 1023
TauI GCSGC 2 cut(s) 558, 1348
TfiI GAWTC 6 cut(s) 296, 537, 630, 733, 1011, 1276
Tru1I TTAA 3 cut(s) 869, 1062, 1086
Tru9I TTAA 3 cut(s) 869, 1062, 1086
TscAI CASTG 5 cut(s) 193, 224, 681, 928, 1164
TseFI GTSAC 3 cut(s) 266, 666, 1499
TseI GCWGC 2 cut(s) 1342, 1401
Tsp45I GTSAC 3 cut(s) 266, 666, 1499
TspDTI ATGAA 7 cut(s) 172, 343, 373, 529, 959, 989, 1527
TspGWI ACGGA 2 cut(s) 921, 1279
TspRI CASTG 5 cut(s) 193, 224, 681, 928, 1164
VneI GTGCAC 1 cut(s) 724
VpaK11BI GGWCC 2 cut(s) 60, 288
XapI RAATTY 3 cut(s) 1051, 1151, 1185
XceI RCATGY 1 cut(s) 576
XmiI GTMKAC 2 cut(s) 192, 906
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 5 cut(s) 345, 413, 422, 621, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.