pycom05g21470

Organic cation carnitine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0017263
Physical Location & Seq
Forward (+)
24109890 .. 24111945
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21470.2

Sequence Viewer

Length: 1608 bp
ATGGCTGATCCAACCCCTTTTGGCCTTGATCCAAACATGGAAGACCCAGAAACTCTGAGGACCAATCTCCTCAATTCCTTCGATCAAATAATTGAGCAAAATCAATCAAGTTTTGGGTGGAAACAATTCCTCCAAGCCATCCTTGTCTCTTTGGCATCACTCTTTGATGGTCAACAAACTTTCATCAGTGTCTACACAGATGCAATCCCTACATGGCACTGCTCCACCACCACCACCACCTCATGCACCACAAACTCCAACATCTGTGACCTGGCCGACTCCGATTGGTCCTGGGATTCAACTGCCTCCACCACAATCATATCTGATTGGAGCCTCCAATGCTCTAGCTCATTCATCAGAGGCCTCCCTGCCTCCTCCTACTTCTTGGGCGGTGTGGTCGGTGGGTTCCTTCTAGGAACCCTAGCTGACTCCTCACTCGGTCGCAAGAAGCTCCTCTTGATCTCTTGTGTAACGATGTCCTTAGCTTCGTTTATCACCATTTTCTCCCCAAACGTTTGGGTTTACTCAGCAGTCAGATTCATAAGCGGGGTCGGCCGCTCCTCAATTAGTACATGTGTTCTTGTCTTGCTTATGGAAAAAGTTGGGAAGAAATGGAGGCCTAGAGTGGGAATCATGCAGTTTTTTTTCTTCACTCTCGGGTTTTTGTCACTACCACTGATTGCTTATCTCAACAGAGCTAACTCATGGAGAGCCCTGTACTTGTGCACTTCGATTCCTGCAGTTTTATACTGCTTACTGCTTCAGTTCTTTGTCAGCGAGTCTCCGAGATGGCTGTTCATGAACGGTAAAAAAGAGGAAGCTGTAGCCATACTGTTGAAATCTGCCGGACAAAATTACCCAAGTGAGTTAAAATTGTTGTTGGTCTCATCTCATGAGGTGGAGGTCGACTCTTCAAATATCAGTAATCATCCGTACAAGTCAATGAAGGACTTGTTTGCAAAAAGATGGGCTATGAAGAGAACCCTAACGGTAATGGTACTAGGGTTTGGAATCGGAATGGTGTACTATGGAATGCCATTAGGGGTTGGAAGTTTGGGGTTTAACATTTATTTGAGTGTTATGTTTAATGCTTTGTTAGAAATACCCTCGTATCCAATTACTTGCATTATATTGGAAAGATGGAGTAGGAAATTTTCAGTGCTCGGATTTTGTTTAGTGAGTGGAATTTGTGGAATTGTGTGTGCAGTTGTAGGGCAAAAGGGGGTGAGAATTGGGTTGGAATTGGCTTCTTTCTTTTGCTCACGAACGGCTTGGAATCTGATTTCTATGTTCACAGTTGAGTTGTTTCCGACTTGTGTGAGGAACTCTGCTACATCTTTGCTGCGGCAGTCTTATGTGTTGAGTGCTGTTTTTAGCTCGATGTTAGTTTCTGTTGGGAGCAGCAATGAGTTTCTTTCTTACGGCGTGTTTGGATTGGCTATATTTTTTTCTGGATTTTTTGTGGGATTTTTGCCGGATACAAGAGGTGGAATGCTTTGTGACACCATGGATGAACAAGAACGCAAAGAGAATATGATTTTGAGGGAGACGGGAGGCCTCCAAGGACAAGTCCGCAATGGAAGAAAGAAACGGCCTTTCGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05231 map05231
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

536

Amino Acids

59.33

Weight (kDa)

8.43

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017263)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14030
malus_domestica MD05G1238600.v1.1
prunus_persica Prupe.4G127600_v2.0.a1
pyrus_communis pycom05g21470
rosa_chinensis RchiOBHm_Chr5g0023351
rosa_laevigata RLG00000032715
rosa_multiflora Rmu_co8449133.1_g000001
rosa_roxburghii Rroxscaffold_1G00055990
rosa_rugosa Rorug05G0078600
rosa_samantha Rh5AG165200 Rh5CG179500 Rh5DG166100
rosa_wichuraiana Rw5G014880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 558
AccI GTMKAC 2 cut(s) 192, 906
AciI CCGC 5 cut(s) 390, 546, 556, 1345, 1573
AclI AACGTT 1 cut(s) 513
AclWI GGATC 2 cut(s) 2, 23
AcoI YGGCCR 2 cut(s) 273, 553
AcsI RAATTY 2 cut(s) 1151, 1185
AcuI CTGAAG 1 cut(s) 746
AfaI GTAC 5 cut(s) 571, 719, 935, 999, 1025
AfiI CCNNNNNNNGG 1 cut(s) 626
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 3 cut(s) 300, 838, 915
AjnI CCWGG 2 cut(s) 270, 290
AluBI AGCT 7 cut(s) 348, 425, 451, 485, 698, 821, 1377
AluI AGCT 7 cut(s) 348, 425, 451, 485, 698, 821, 1377
Alw21I GWGCWC 2 cut(s) 728, 1164
Alw26I GTCTC 4 cut(s) 151, 786, 889, 1541
Alw44I GTGCAC 1 cut(s) 724
AlwI GGATC 2 cut(s) 2, 23
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 7 cut(s) 22, 273, 361, 553, 617, 1555, 1592
ApaLI GTGCAC 1 cut(s) 724
ApeKI GCWGC 2 cut(s) 1342, 1401
ApoI RAATTY 2 cut(s) 1151, 1185
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 60, 288
AsuHPI GGTGA 2 cut(s) 487, 1237
AsuII TTCGAA 1 cut(s) 1599
AvaI CYCGRG 1 cut(s) 656
AvaII GGWCC 2 cut(s) 60, 288
BaeGI GKGCMC 1 cut(s) 728
BaeI ACNNNNGTAYC 4 cut(s) 989, 1022, 1094, 1127
BanII GRGCYC 1 cut(s) 715
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 2 cut(s) 728, 1164
BbvI GCAGC 2 cut(s) 1329, 1413
BccI CCATC 5 cut(s) 146, 161, 783, 960, 1134
BceAI ACGGC 2 cut(s) 1284, 1438
BciT130I CCWGG 2 cut(s) 272, 292
BciVI GTATCC 2 cut(s) 1122, 1471
BcoDI GTCTC 4 cut(s) 151, 786, 889, 1541
BfaI CTAG 5 cut(s) 345, 413, 422, 621, 1001
BfmI CTRYAG 2 cut(s) 738, 822
BfuI GTATCC 2 cut(s) 1122, 1471
BisI GCNGC 4 cut(s) 556, 1343, 1346, 1402
BlsI GCNGC 4 cut(s) 557, 1344, 1347, 1403
Bme1390I CCNGG 2 cut(s) 272, 292
Bme18I GGWCC 2 cut(s) 60, 288
BmeT110I CYCGRG 1 cut(s) 656
BmgT120I GGNCC 2 cut(s) 60, 288
BmiI GGNNCC 3 cut(s) 332, 407, 418
BmrFI CCNGG 2 cut(s) 272, 292
BmsI GCATC 2 cut(s) 164, 190
BpiI GAAGAC 1 cut(s) 48
BplI GAGNNNNNCTC 2 cut(s) 893, 925
Bpu10I CCTNAGC 1 cut(s) 481
Bpu14I TTCGAA 1 cut(s) 1599
BsaI GGTCTC 1 cut(s) 889
BsaJI CCNNGG 3 cut(s) 291, 1506, 1561
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse3DI GCAATG 2 cut(s) 1411, 1582
BseBI CCWGG 2 cut(s) 272, 292
BseDI CCNNGG 3 cut(s) 291, 1506, 1561
BseGI GGATG 3 cut(s) 138, 928, 1516
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMI GCAATG 2 cut(s) 1411, 1582
BseMII CTCAG 2 cut(s) 47, 540
BseRI GAGGAG 5 cut(s) 59, 364, 421, 443, 550
BseSI GKGCMC 1 cut(s) 728
BseX3I CGGCCG 1 cut(s) 553
BseXI GCAGC 2 cut(s) 1329, 1413
BsgI GTGCAG 1 cut(s) 1224
Bsh1285I CGRYCG 2 cut(s) 442, 556
BshFI GGCC 7 cut(s) 24, 275, 363, 555, 619, 1557, 1594
BsiEI CGRYCG 2 cut(s) 442, 556
BsiHKAI GWGCWC 2 cut(s) 728, 1164
BsiHKCI CYCGRG 1 cut(s) 656
BsiSI CCGG 2 cut(s) 846, 1475
BslI CCNNNNNNNGG 1 cut(s) 626
BsmAI GTCTC 4 cut(s) 151, 786, 889, 1541
BsmBI CGTCTC 1 cut(s) 1541
BsmI GAATGC 2 cut(s) 1038, 1497
BsnI GGCC 7 cut(s) 24, 275, 363, 555, 619, 1557, 1594
Bso31I GGTCTC 1 cut(s) 889
BsoBI CYCGRG 1 cut(s) 656
Bsp119I TTCGAA 1 cut(s) 1599
Bsp1286I GDGCHC 3 cut(s) 715, 728, 1164
Bsp143I GATC 4 cut(s) 7, 28, 82, 459
Bsp19I CCATGG 1 cut(s) 1506
BspACI CCGC 5 cut(s) 390, 546, 556, 1345, 1573
BspANI GGCC 7 cut(s) 24, 275, 363, 555, 619, 1557, 1594
BspCNI CTCAG 2 cut(s) 48, 539
BspHI TCATGA 2 cut(s) 798, 892
BspLI GGNNCC 3 cut(s) 332, 407, 418
BspMAI CTGCAG 1 cut(s) 742
BspPI GGATC 2 cut(s) 2, 23
BspT104I TTCGAA 1 cut(s) 1599
BspTNI GGTCTC 1 cut(s) 889
BsrBI CCGCTC 1 cut(s) 558
BsrDI GCAATG 2 cut(s) 1411, 1582
BssECI CCNNGG 3 cut(s) 291, 1506, 1561
BssMI GATC 4 cut(s) 7, 28, 82, 459
BssT1I CCWWGG 2 cut(s) 1506, 1561
Bst2UI CCWGG 2 cut(s) 272, 292
Bst4CI ACNGT 4 cut(s) 806, 834, 991, 1297
Bst6I CTCTTC 3 cut(s) 916, 971, 1596
BstBI TTCGAA 1 cut(s) 1599
BstDEI CTNAG 3 cut(s) 56, 481, 526
BstDSI CCRYGG 1 cut(s) 1506
BstF5I GGATG 3 cut(s) 138, 928, 1516
BstKTI GATC 4 cut(s) 10, 31, 85, 462
BstMAI GTCTC 4 cut(s) 151, 786, 889, 1541
BstMBI GATC 4 cut(s) 7, 28, 82, 459
BstMCI CGRYCG 2 cut(s) 442, 556
BstMWI GCNNNNNNNGC 2 cut(s) 339, 552
BstNI CCWGG 2 cut(s) 272, 292
BstNSI RCATGY 1 cut(s) 576
BstSCI CCNGG 2 cut(s) 270, 290
BstSFI CTRYAG 2 cut(s) 738, 822
BstSLI GKGCMC 1 cut(s) 728
BstV1I GCAGC 2 cut(s) 1329, 1413
BstV2I GAAGAC 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 516
BstZI CGGCCG 1 cut(s) 553
BsuI GTATCC 2 cut(s) 1122, 1471
BsuRI GGCC 7 cut(s) 24, 275, 363, 555, 619, 1557, 1594
BtgI CCRYGG 1 cut(s) 1506
BtsCI GGATG 3 cut(s) 138, 928, 1516
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 4 cut(s) 193, 217, 674, 1164
CciI TCATGA 2 cut(s) 798, 892
Cfr13I GGNCC 2 cut(s) 60, 288
Csp6I GTAC 5 cut(s) 570, 718, 934, 998, 1024
CviAII CATG 9 cut(s) 37, 213, 243, 573, 634, 705, 799, 893, 1507
CviQI GTAC 5 cut(s) 570, 718, 934, 998, 1024
DdeI CTNAG 3 cut(s) 56, 481, 526
DpnI GATC 4 cut(s) 9, 30, 84, 461
DpnII GATC 4 cut(s) 7, 28, 82, 459
EaeI YGGCCR 2 cut(s) 273, 553
EagI CGGCCG 1 cut(s) 553
Eam1104I CTCTTC 3 cut(s) 916, 971, 1596
EarI CTCTTC 3 cut(s) 916, 971, 1596
EclXI CGGCCG 1 cut(s) 553
Eco130I CCWWGG 2 cut(s) 1506, 1561
Eco147I AGGCCT 3 cut(s) 363, 619, 1557
Eco24I GRGCYC 1 cut(s) 715
Eco31I GGTCTC 1 cut(s) 889
Eco47I GGWCC 2 cut(s) 60, 288
Eco52I CGGCCG 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 746
Eco88I CYCGRG 1 cut(s) 656
EcoRII CCWGG 2 cut(s) 270, 290
EcoT14I CCWWGG 2 cut(s) 1506, 1561
EcoT38I GRGCYC 1 cut(s) 715
ErhI CCWWGG 2 cut(s) 1506, 1561
Esp3I CGTCTC 1 cut(s) 1541
FaeI CATG 9 cut(s) 40, 216, 246, 576, 637, 708, 802, 896, 1510
FalI AAGNNNNNCTT 4 cut(s) 126, 158, 440, 472
FatI CATG 9 cut(s) 36, 212, 242, 572, 633, 704, 798, 892, 1506
FauI CCCGC 1 cut(s) 539
FblI GTMKAC 2 cut(s) 192, 906
Fnu4HI GCNGC 4 cut(s) 556, 1343, 1346, 1402
FokI GGATG 3 cut(s) 125, 915, 1523
FriOI GRGCYC 1 cut(s) 715
Fsp4HI GCNGC 4 cut(s) 556, 1343, 1346, 1402
FspBI CTAG 5 cut(s) 345, 413, 422, 621, 1001
GluI GCNGC 4 cut(s) 556, 1343, 1346, 1402
HaeIII GGCC 7 cut(s) 24, 275, 363, 555, 619, 1557, 1594
HapII CCGG 2 cut(s) 846, 1475
Hin1II CATG 9 cut(s) 40, 216, 246, 576, 637, 708, 802, 896, 1510
HincII GTYRAC 2 cut(s) 173, 907
HindII GTYRAC 2 cut(s) 173, 907
HpaII CCGG 2 cut(s) 846, 1475
HphI GGTGA 2 cut(s) 487, 1237
Hpy166II GTNNAC 7 cut(s) 173, 193, 523, 726, 907, 1024, 1293
Hpy188III TCNNGA 5 cut(s) 457, 799, 893, 1263, 1452
Hpy8I GTNNAC 7 cut(s) 173, 193, 523, 726, 907, 1024, 1293
HpyAV CCTTC 3 cut(s) 88, 419, 940
HpyCH4III ACNGT 4 cut(s) 806, 834, 991, 1297
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 8 cut(s) 203, 246, 637, 726, 740, 959, 1125, 1205
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 552
HpyF3I CTNAG 3 cut(s) 56, 481, 526
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 9 cut(s) 40, 216, 246, 576, 637, 708, 802, 896, 1510
Kzo9I GATC 4 cut(s) 7, 28, 82, 459
LmnI GCTCC 5 cut(s) 227, 330, 456, 563, 1398
Lsp1109I GCAGC 2 cut(s) 1329, 1413
LweI GCATC 2 cut(s) 164, 190
MaeI CTAG 5 cut(s) 345, 413, 422, 621, 1001
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 4 cut(s) 266, 469, 666, 1499
MalI GATC 4 cut(s) 9, 30, 84, 461
MbiI CCGCTC 1 cut(s) 558
MboI GATC 4 cut(s) 7, 28, 82, 459
MboII GAAGA 6 cut(s) 53, 619, 640, 903, 988, 1593
MhlI GDGCHC 3 cut(s) 715, 728, 1164
MlyI GAGTC 4 cut(s) 272, 422, 788, 902
MmeI TCCRAC 5 cut(s) 35, 282, 1027, 1218, 1334
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 3 cut(s) 869, 1062, 1086
MspI CCGG 2 cut(s) 846, 1475
MspR9I CCNGG 2 cut(s) 272, 292
Mva1269I GAATGC 2 cut(s) 1038, 1497
MvaI CCWGG 2 cut(s) 272, 292
MwoI GCNNNNNNNGC 2 cut(s) 339, 552
NcoI CCATGG 1 cut(s) 1506
NdeII GATC 4 cut(s) 7, 28, 82, 459
NlaIII CATG 9 cut(s) 40, 216, 246, 576, 637, 708, 802, 896, 1510
NlaIV GGNNCC 3 cut(s) 332, 407, 418
NmuCI GTSAC 3 cut(s) 266, 666, 1499
NspI RCATGY 1 cut(s) 576
NspV TTCGAA 1 cut(s) 1599
PagI TCATGA 2 cut(s) 798, 892
PceI AGGCCT 3 cut(s) 363, 619, 1557
PciI ACATGT 1 cut(s) 572
PctI GAATGC 2 cut(s) 1038, 1497
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 6 cut(s) 296, 537, 630, 733, 1011, 1276
PkrI GCNGC 4 cut(s) 557, 1344, 1347, 1403
PleI GAGTC 4 cut(s) 272, 422, 787, 902
PpsI GAGTC 4 cut(s) 272, 422, 787, 902
PscI ACATGT 1 cut(s) 572
Psp1406I AACGTT 1 cut(s) 513
Psp6I CCWGG 2 cut(s) 270, 290
PspGI CCWGG 2 cut(s) 270, 290
PspN4I GGNNCC 3 cut(s) 332, 407, 418
PspPI GGNCC 2 cut(s) 60, 288
PstI CTGCAG 1 cut(s) 742
RsaI GTAC 5 cut(s) 571, 719, 935, 999, 1025
RsaNI GTAC 5 cut(s) 570, 718, 934, 998, 1024
SalI GTCGAC 1 cut(s) 905
SaqAI TTAA 3 cut(s) 869, 1062, 1086
SatI GCNGC 4 cut(s) 556, 1343, 1346, 1402
Sau3AI GATC 4 cut(s) 7, 28, 82, 459
Sau96I GGNCC 2 cut(s) 60, 288
SchI GAGTC 4 cut(s) 272, 422, 788, 902
ScrFI CCNGG 2 cut(s) 272, 292
SduI GDGCHC 3 cut(s) 715, 728, 1164
SfaNI GCATC 2 cut(s) 164, 190
SfcI CTRYAG 2 cut(s) 738, 822
SfuI TTCGAA 1 cut(s) 1599
SinI GGWCC 2 cut(s) 60, 288
SseBI AGGCCT 3 cut(s) 363, 619, 1557
SsiI CCGC 5 cut(s) 390, 546, 556, 1345, 1573
SspMI CTAG 5 cut(s) 345, 413, 422, 621, 1001
StuI AGGCCT 3 cut(s) 363, 619, 1557
StyD4I CCNGG 2 cut(s) 270, 290
StyI CCWWGG 2 cut(s) 1506, 1561
TaaI ACNGT 4 cut(s) 806, 834, 991, 1297
TaiI ACGT 1 cut(s) 516
TaqI TCGA 5 cut(s) 81, 731, 906, 1379, 1599
TaqII GACCGA 1 cut(s) 428
TatI WGTACW 3 cut(s) 569, 717, 1023
TauI GCSGC 2 cut(s) 558, 1348
TfiI GAWTC 6 cut(s) 296, 537, 630, 733, 1011, 1276
Tru1I TTAA 3 cut(s) 869, 1062, 1086
Tru9I TTAA 3 cut(s) 869, 1062, 1086
TscAI CASTG 4 cut(s) 193, 224, 681, 1164
TseFI GTSAC 3 cut(s) 266, 666, 1499
TseI GCWGC 2 cut(s) 1342, 1401
Tsp45I GTSAC 3 cut(s) 266, 666, 1499
TspDTI ATGAA 8 cut(s) 172, 343, 529, 787, 815, 959, 989, 1527
TspGWI ACGGA 1 cut(s) 921
TspRI CASTG 4 cut(s) 193, 224, 681, 1164
VneI GTGCAC 1 cut(s) 724
VpaK11BI GGWCC 2 cut(s) 60, 288
XapI RAATTY 2 cut(s) 1151, 1185
XceI RCATGY 1 cut(s) 576
XmiI GTMKAC 2 cut(s) 192, 906
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 5 cut(s) 345, 413, 422, 621, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.