Prupe.4G127600_v2.0.a1

Organic cation carnitine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017263
Physical Location & Seq
Reverse (-)
7012777 .. 7014313
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G127600.1

Sequence Viewer

Length: 1536 bp
ATGGAAGACCAAGAAACTCTAAGAAACAATCTCCTTGACTCCTTGGATCAAATAATTGAGCAGAGTCAATCAAGTTTTGGGTGGAAGCAGTTCTTGCAAGCCATCCTTGTCTCTTTGGCTTCACTTTTTGATGGCCAACAAACATTCATCAGTGTCTACACAGATGCTGTGCCTTCATGGCACTGCTCCACTGCCACCACATCATCATCATCATCATGCACCACAAGCTCCAGCATCTGTGATCTTCCCAGCTCTGATTGGTCCTGGGATGCAATTTCCTCCCTCACAATCATATCTGATTGGGACCTGCAATGTTCAAGCTCTTTCATCAGAGGCATCCCTGCCTCATCTTATTTCTTGGGTGGTGTGGTTGGTGGGTTCCTTCTAGGCACTCTAGCTGACTCTTCACTTGGCCGCAAGAAGCTGCTCTTGATCTCAAGCATCACAATGTCTTTAGCTTCTTTTCTTACCATCTTCTCCCCAAACATTTGGGTTTACTCTGCAGTGAGATTTGTTAGCGGGTTCGGCCGCTCGTCAATCAGTACATGTGTTCTTGTGTTGTTGATGGAAAAAGTTGGAAAAAAATGGAGGCCTAGATTGGGAATTATGCAGTTCTTTTTTTTCACTCTGGGGTTTTTGTCATTGCCATTGATTGCTTATGTTAACAGAGATAACTCATGGAGAGCTCTGTATTTGTGCACTTCAATTCCTGCAATTCTTTACTGCATATTGCTTCAATTCTTTGTAACTGAGTCTCCAAGATGGCTTTATATGCATGGTTTTGTGGAAGAAGCCATAGCAATACTGGAAAAATCTTCAGCACCAAACTACCCAAGTGAGTTGAAATTGTTGTTGGTCTCAACAGGCATGCCATCTGAGGGGGTGGAGGAAACTTCAAAGACTAAAAATCACCCATACAAGTCAATGAAGGACTTGTTTGCCAAAAGATGGGCTATGAAGAGAACACTAACAGTTATGGTACTTGGTTTTGGCATTGGAATGGTTTATTATGGCATGCCATTAGGAGTTGGAAATTTAGGCTTCAATATTTATCTAAGTGTCATGTTCAATGCTTTGCTAGAAATACCTTCATATCCAATCACTTGCATCATTTTAGAAAGATGGAGCAGGAAATATTCAGTGCTTGCATTTTGTTTGGTAAGTGGGATATGTGGCATTTTGTGTGCAATTGTTGGAAATGGGCAAAAGGGTATTAGAATTGGGCTGGAATTGGCTTCTTTCTTCTGTTCAAGAACAGCATGGAATTTGATCTCCATGTTTACAGTTGAGTTGTTTCCAACTTGTGTGAGAAATTCTGCTACATCTCTGCTGAGGCAATCTTATGTGCTGAGTGCTGTGTTCAGTTCAATACTGGTTTCTGTAGGGAGCAACAATGGGTTTCTTTCTTATGGAGTTTTTGGGTTGGCTATATTTTTTTCTGGGTTTTTTGTGGCTTGTTTGCCAGACACAAGGGGAGGAACGCTTTGTGACACCATGGAAGAACAAGAAGGCAAAGAGAATATGATTTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05231 map05231
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

512

Amino Acids

56.39

Weight (kDa)

7.38

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017263)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14030
malus_domestica MD05G1238600.v1.1
prunus_persica Prupe.4G127600_v2.0.a1
pyrus_communis pycom05g21470
rosa_chinensis RchiOBHm_Chr5g0023351
rosa_laevigata RLG00000032715
rosa_multiflora Rmu_co8449133.1_g000001
rosa_roxburghii Rroxscaffold_1G00055990
rosa_rugosa Rorug05G0078600
rosa_samantha Rh5AG165200 Rh5CG179500 Rh5DG166100
rosa_wichuraiana Rw5G014880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
AccB7I CCANNNNNTGG 1 cut(s) 948
AccBSI CCGCTC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 156
AciI CCGC 3 cut(s) 415, 519, 529
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 3 cut(s) 133, 412, 526
AcsI RAATTY 3 cut(s) 1033, 1264, 1312
AcuI CTGAAG 1 cut(s) 801
AfaI GTAC 2 cut(s) 544, 981
AfiI CCNNNNNNNGG 3 cut(s) 599, 878, 948
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 9 cut(s) 318, 705, 737, 844, 897, 1045, 1069, 1251, 1368
AjnI CCWGG 1 cut(s) 263
AjuI GAANNNNNNNTTGG 3 cut(s) 836, 868, 1511
AluBI AGCT 7 cut(s) 228, 252, 321, 398, 424, 458, 686
AluI AGCT 7 cut(s) 228, 252, 321, 398, 424, 458, 686
Alw21I GWGCWC 2 cut(s) 688, 701
Alw26I GTCTC 3 cut(s) 115, 759, 862
Alw44I GTGCAC 1 cut(s) 697
AlwI GGATC 1 cut(s) 54
AlwNI CAGNNNCTG 2 cut(s) 167, 237
AoxI GGCC 4 cut(s) 133, 412, 526, 590
ApaLI GTGCAC 1 cut(s) 697
ApeKI GCWGC 1 cut(s) 424
ApoI RAATTY 3 cut(s) 1033, 1264, 1312
Asp700I GAANNNNTTC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 261, 304
AsuHPI GGTGA 1 cut(s) 902
AvaII GGWCC 2 cut(s) 261, 304
BaeGI GKGCMC 1 cut(s) 701
BalI TGGCCA 1 cut(s) 135
BanII GRGCYC 1 cut(s) 688
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 688, 701
BbvCI CCTCAGC 1 cut(s) 1331
BbvI GCAGC 1 cut(s) 411
BccI CCATC 8 cut(s) 110, 125, 479, 559, 756, 880, 942, 1116
BciT130I CCWGG 1 cut(s) 265
BcoDI GTCTC 3 cut(s) 115, 759, 862
BfaI CTAG 4 cut(s) 386, 395, 594, 1079
BfmI CTRYAG 2 cut(s) 501, 1380
BfuAI ACCTGC 1 cut(s) 315
BglI GCCNNNNNGGC 1 cut(s) 178
BisI GCNGC 3 cut(s) 415, 425, 529
BlsI GCNGC 3 cut(s) 416, 426, 530
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 2 cut(s) 261, 304
BmgT120I GGNCC 2 cut(s) 261, 304
BmiI GGNNCC 2 cut(s) 305, 380
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 6 cut(s) 154, 243, 259, 345, 450, 1116
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 1331
BpuEI CTTGAG 1 cut(s) 421
BsaI GGTCTC 1 cut(s) 862
BsaJI CCNNGG 3 cut(s) 42, 264, 1494
BsaXI ACNNNNNCTCC 2 cut(s) 739, 769
Bsc4I CCNNNNNNNGG 3 cut(s) 599, 878, 948
Bse1I ACTGG 2 cut(s) 810, 1377
Bse3DI GCAATG 2 cut(s) 317, 641
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 3 cut(s) 42, 264, 1494
BseGI GGATG 3 cut(s) 102, 274, 336
BseLI CCNNNNNNNGG 3 cut(s) 599, 878, 948
BseMI GCAATG 2 cut(s) 317, 641
BseMII CTCAG 4 cut(s) 741, 867, 1322, 1340
BseNI ACTGG 2 cut(s) 810, 1377
BseSI GKGCMC 1 cut(s) 701
BseX3I CGGCCG 1 cut(s) 526
BseXI GCAGC 1 cut(s) 411
BseYI CCCAGC 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 529
BshFI GGCC 4 cut(s) 135, 414, 528, 592
BsiEI CGRYCG 1 cut(s) 529
BsiHKAI GWGCWC 2 cut(s) 688, 701
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 3 cut(s) 599, 878, 948
BsmAI GTCTC 3 cut(s) 115, 759, 862
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 4 cut(s) 135, 414, 528, 592
Bso31I GGTCTC 1 cut(s) 862
Bsp1286I GDGCHC 2 cut(s) 688, 701
Bsp143I GATC 4 cut(s) 46, 241, 432, 1269
Bsp19I CCATGG 1 cut(s) 1494
BspACI CCGC 3 cut(s) 415, 519, 529
BspANI GGCC 4 cut(s) 135, 414, 528, 592
BspCNI CTCAG 4 cut(s) 742, 868, 1323, 1341
BspLI GGNNCC 2 cut(s) 305, 380
BspMAI CTGCAG 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 862
BsrBI CCGCTC 1 cut(s) 531
BsrDI GCAATG 2 cut(s) 317, 641
BsrI ACTGG 2 cut(s) 810, 1377
BssECI CCNNGG 3 cut(s) 42, 264, 1494
BssMI GATC 4 cut(s) 46, 241, 432, 1269
BssT1I CCWWGG 2 cut(s) 42, 1494
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 2 cut(s) 973, 1285
Bst6I CTCTTC 2 cut(s) 409, 953
BstAPI GCANNNNNTGC 1 cut(s) 94
BstC8I GCNNGC 4 cut(s) 99, 869, 1016, 1146
BstDEI CTNAG 6 cut(s) 20, 750, 876, 1055, 1331, 1349
BstDSI CCRYGG 1 cut(s) 1494
BstF5I GGATG 3 cut(s) 102, 274, 336
BstKTI GATC 4 cut(s) 49, 244, 435, 1272
BstMAI GTCTC 3 cut(s) 115, 759, 862
BstMBI GATC 4 cut(s) 46, 241, 432, 1269
BstMCI CGRYCG 1 cut(s) 529
BstMWI GCNNNNNNNGC 5 cut(s) 94, 178, 225, 525, 772
BstNI CCWGG 1 cut(s) 265
BstNSI RCATGY 3 cut(s) 549, 871, 1018
BstSCI CCNGG 1 cut(s) 263
BstSFI CTRYAG 2 cut(s) 501, 1380
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 489
BstZI CGGCCG 1 cut(s) 526
BsuRI GGCC 4 cut(s) 135, 414, 528, 592
BtgI CCRYGG 1 cut(s) 1494
BtsCI GGATG 3 cut(s) 102, 274, 336
BtsI GCAGTG 3 cut(s) 181, 189, 510
BtsIMutI CAGTG 5 cut(s) 157, 181, 189, 510, 1146
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 4 cut(s) 99, 869, 1016, 1146
CaiI CAGNNNCTG 2 cut(s) 167, 237
Cfr13I GGNCC 2 cut(s) 261, 304
Csp6I GTAC 2 cut(s) 543, 980
CviQI GTAC 2 cut(s) 543, 980
DdeI CTNAG 6 cut(s) 20, 750, 876, 1055, 1331, 1349
DpnI GATC 4 cut(s) 48, 243, 434, 1271
DpnII GATC 4 cut(s) 46, 241, 432, 1269
EaeI YGGCCR 3 cut(s) 133, 412, 526
EagI CGGCCG 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 409, 953
EarI CTCTTC 2 cut(s) 409, 953
Ecl136II GAGCTC 1 cut(s) 686
EclXI CGGCCG 1 cut(s) 526
Eco130I CCWWGG 2 cut(s) 42, 1494
Eco147I AGGCCT 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 688
Eco31I GGTCTC 1 cut(s) 862
Eco47I GGWCC 2 cut(s) 261, 304
Eco52I CGGCCG 1 cut(s) 526
Eco53kI GAGCTC 1 cut(s) 686
Eco57I CTGAAG 1 cut(s) 801
EcoICRI GAGCTC 1 cut(s) 686
EcoO109I RGGNCCY 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 42, 1494
EcoT22I ATGCAT 1 cut(s) 777
EcoT38I GRGCYC 1 cut(s) 688
ErhI CCWWGG 2 cut(s) 42, 1494
FalI AAGNNNNNCTT 6 cut(s) 77, 109, 90, 122, 413, 445
FaqI GGGAC 1 cut(s) 317
FauI CCCGC 1 cut(s) 512
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 3 cut(s) 415, 425, 529
FokI GGATG 3 cut(s) 89, 281, 323
FriOI GRGCYC 1 cut(s) 688
Fsp4HI GCNGC 3 cut(s) 415, 425, 529
FspBI CTAG 4 cut(s) 386, 395, 594, 1079
GluI GCNGC 3 cut(s) 415, 425, 529
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 214
HaeIII GGCC 4 cut(s) 135, 414, 528, 592
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HinfI GANTC 4 cut(s) 38, 64, 401, 752
HpaI GTTAAC 1 cut(s) 664
HphI GGTGA 1 cut(s) 902
Hpy166II GTNNAC 5 cut(s) 157, 496, 664, 699, 1281
Hpy188I TCNGA 4 cut(s) 256, 298, 332, 877
Hpy188III TCNNGA 2 cut(s) 430, 1251
Hpy8I GTNNAC 5 cut(s) 157, 496, 664, 699, 1281
HpyAV CCTTC 5 cut(s) 183, 392, 922, 1098, 1502
HpyCH4III ACNGT 2 cut(s) 973, 1285
HpyF10VI GCNNNNNNNGC 5 cut(s) 94, 178, 225, 525, 772
HpyF3I CTNAG 6 cut(s) 20, 750, 876, 1055, 1331, 1349
KspAI GTTAAC 1 cut(s) 664
Kzo9I GATC 4 cut(s) 46, 241, 432, 1269
LmnI GCTCC 4 cut(s) 191, 233, 1125, 1386
Lsp1109I GCAGC 1 cut(s) 411
LweI GCATC 6 cut(s) 154, 243, 259, 345, 450, 1116
MaeI CTAG 4 cut(s) 386, 395, 594, 1079
MaeIII GTNAC 2 cut(s) 745, 1487
MalI GATC 4 cut(s) 48, 243, 434, 1271
MbiI CCGCTC 1 cut(s) 531
MboI GATC 4 cut(s) 46, 241, 432, 1269
MboII GAAGA 9 cut(s) 17, 236, 396, 466, 800, 807, 970, 1234, 1511
MfeI CAATTG 1 cut(s) 1188
MhlI GDGCHC 2 cut(s) 688, 701
MlsI TGGCCA 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 4 cut(s) 32, 73, 395, 761
MmeI TCCRAC 4 cut(s) 556, 1009, 1174, 1322
MnlI CCTC 9 cut(s) 289, 293, 326, 355, 582, 871, 880, 1326, 1469
Mox20I TGGCCA 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 777
MroXI GAANNNNTTC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 135
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 3 cut(s) 214, 446, 998
Msp20I TGGCCA 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 265
MunI CAATTG 1 cut(s) 1188
MvaI CCWGG 1 cut(s) 265
MwoI GCNNNNNNNGC 5 cut(s) 94, 178, 225, 525, 772
NcoI CCATGG 1 cut(s) 1494
NdeII GATC 4 cut(s) 46, 241, 432, 1269
NlaIV GGNNCC 2 cut(s) 305, 380
NmuCI GTSAC 1 cut(s) 1487
NsiI ATGCAT 1 cut(s) 777
NspI RCATGY 3 cut(s) 549, 871, 1018
PaeI GCATGC 2 cut(s) 871, 1018
PceI AGGCCT 1 cut(s) 592
PciI ACATGT 1 cut(s) 545
PdmI GAANNNNTTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 948
PkrI GCNGC 3 cut(s) 416, 426, 530
PleI GAGTC 4 cut(s) 32, 72, 395, 760
PpsI GAGTC 4 cut(s) 32, 72, 395, 760
PpuMI RGGWCCY 1 cut(s) 304
PscI ACATGT 1 cut(s) 545
Psp124BI GAGCTC 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 305, 380
PspPI GGNCC 2 cut(s) 261, 304
PspPPI RGGWCCY 1 cut(s) 304
PstI CTGCAG 1 cut(s) 505
PstNI CAGNNNCTG 2 cut(s) 167, 237
RsaI GTAC 2 cut(s) 544, 981
RsaNI GTAC 2 cut(s) 543, 980
RseI CAYNNNNRTG 3 cut(s) 214, 446, 998
SacI GAGCTC 1 cut(s) 688
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 3 cut(s) 415, 425, 529
Sau3AI GATC 4 cut(s) 46, 241, 432, 1269
Sau96I GGNCC 2 cut(s) 261, 304
SchI GAGTC 4 cut(s) 32, 73, 395, 761
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 2 cut(s) 688, 701
SetI ASST 9 cut(s) 230, 254, 309, 323, 400, 426, 460, 688, 1090
SfaNI GCATC 6 cut(s) 154, 243, 259, 345, 450, 1116
SfcI CTRYAG 2 cut(s) 501, 1380
SinI GGWCC 2 cut(s) 261, 304
SmiMI CAYNNNNRTG 3 cut(s) 214, 446, 998
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
SphI GCATGC 2 cut(s) 871, 1018
SseBI AGGCCT 1 cut(s) 592
SsiI CCGC 3 cut(s) 415, 519, 529
SspI AATATT 2 cut(s) 1048, 1136
SspMI CTAG 4 cut(s) 386, 395, 594, 1079
SstI GAGCTC 1 cut(s) 688
StuI AGGCCT 1 cut(s) 592
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 2 cut(s) 42, 1494
TaaI ACNGT 2 cut(s) 973, 1285
TatI WGTACW 1 cut(s) 542
TauI GCSGC 2 cut(s) 417, 531
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 5 cut(s) 157, 188, 196, 510, 1146
TseFI GTSAC 1 cut(s) 1487
TseI GCWGC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 1487
TspDTI ATGAA 6 cut(s) 136, 165, 316, 941, 971, 1080
TspRI CASTG 5 cut(s) 157, 188, 196, 510, 1146
Van91I CCANNNNNTGG 1 cut(s) 948
VneI GTGCAC 1 cut(s) 697
VpaK11BI GGWCC 2 cut(s) 261, 304
XapI RAATTY 3 cut(s) 1033, 1264, 1312
XceI RCATGY 3 cut(s) 549, 871, 1018
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 4 cut(s) 386, 395, 594, 1079
Zsp2I ATGCAT 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.