Rh5DG166100

Organic cation carnitine transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
17394669 .. 17396808
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG166100.1

Sequence Viewer

Length: 1557 bp
ATGGCTGATCCAACTTCTCTTCTGCCTCAACCCAATAGAGAAGAAGATCCAGAAACTCCAAGCAACAATCTCCACCACTCCTTGGACCAAATAATTGAGCAGAGTGAAGCAAGTTTTGGTTGGAACCAATTCTTGCAATCCATCCTTGTTTCCTTGGCATCACTCTTTGATGGAACCCAAACCTTTATCAGTGTCTACACAGATGCCACACCTACATGGCACTGCACCAGTGGCACCACAACTTGCAACTCAAGCTCAGATATCTGTGATCTGTCTACCTCTGATTGGGCTTGGGATTCAATTTCCTCCAAGACAATCATATCAGATTGGAACCTCCAATGTTCAAGCTCATTCATCACAGGCCTTCCAGCCTCGTCTTACTTCATGGGTGGTGTGATAGGTGGGTTGCTTCTTGGCACTCTAGCTGATTCCTCGCTCGGCCGCAAGAGACTGCTAGTAATCTCTTGCATTACAATGTCTGTTGCTGCATTTGCAACAATCTTCTCTACAAATGTGTGGATTTACTCTGCACTGAGATTCGTAAGTGGAATTGGCCGTTCGTGTATTAGTACATGTGTGCTGGTGTTGTTGATGGAGAGAGTTGGAAGAAAATGGAGGCCTAGAGTTGGAATCATGCAGTTCTTCTTTTTTACACTTGGTTTTTTGTCACTACCAGCTATTGCTTACATTAACAGAGCTAATTCATGGAGAGCTTTGTATCTATGTACTTCAATTCCTGCAATGCTTTACTGCTTCTTGCTTCAGTTCTTTGTTAAGGAGTCTCCAAGATGGCTCTTCATGAATGGCCGTGGAGAAGAAGCCATAGCAATACTGAAGAAATCTGCATTGTCAAACCCGAATAGTGAATTCAACTCGGTGTTGTTGTCAGCAGACTTGCTCTCTCAGGTACCGGAATCTACAAAATCTATTGATCCATACAAGTCAATGAAGGACTTGTTTGCCAAGAAATGGGCTATGAAGAGAACACTAATAGTTATGGTGCTTGGTTTCGGCATTGGAATGGTCTACTATGGTATGCCACTAGGGGTTGGAAATTTAGGATTCAATATCTACCTAAGTGTTATGTTCAATGCTTTGTTAGAGATACCTTCATATCCACTCACATTGATCATACTAGAAAAATGGAGCAGGAAACTCTCAGTGCTTTGGTTTTGTTTGGTAAGTGGGATTTGTGGTGTGGTATGTGCTGTGGTGGGTGATAAGCAAAAAGTGATTAGAATTGTGCTGGAGTTGGCTTCTTTCTTTTGCTCACGAACAGCTTGGAATCTGATATCTATGTTTACAGTGGAGTTGTTCCCAACTTGTGTGAGGAACTCTGCTACATCTTTGTTGAGGCAGTCATATATTTTGAGTGCTGTATTTAGTTCAATGTTGGTTTCAGTTGGAAGCAGCAATGGGTTTCTTTCATATGGAGTTTTTGGAGTGGCTATATTTGTGTCTGGATTTTTTGTGGCTTTTCTGCCAGACACTAGAGGTGGAACACTTTGTGATACCATGGATGAACAAGAAAGAAAAGAGAGTATGATTTTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

57.22

Weight (kDa)

7.84

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 77 - 502 8.8e-34 Sugar (and other) transporter
MFS_1 PF07690 116 - 457 1.4e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017263)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14030
malus_domestica MD05G1238600.v1.1
prunus_persica Prupe.4G127600_v2.0.a1
pyrus_communis pycom05g21470
rosa_chinensis RchiOBHm_Chr5g0023351
rosa_laevigata RLG00000032715
rosa_multiflora Rmu_co8449133.1_g000001
rosa_roxburghii Rroxscaffold_1G00055990
rosa_rugosa Rorug05G0078600
rosa_samantha Rh5AG165200 Rh5CG179500 Rh5DG166100
rosa_wichuraiana Rw5G014880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 907
AccB1I GGYRCC 2 cut(s) 233, 907
AccB7I CCANNNNNTGG 2 cut(s) 82, 969
AccI GTMKAC 3 cut(s) 195, 275, 1026
AciI CCGC 1 cut(s) 442
AclWI GGATC 3 cut(s) 2, 41, 926
AcoI YGGCCR 3 cut(s) 439, 553, 805
AcsI RAATTY 2 cut(s) 866, 1054
AcuI CTGAAG 2 cut(s) 746, 854
AdeI CACNNNGTG 1 cut(s) 1508
AfaI GTAC 3 cut(s) 571, 727, 909
AfiI CCNNNNNNNGG 4 cut(s) 82, 285, 626, 969
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 7 cut(s) 300, 345, 732, 871, 1066, 1090, 1389
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 7 cut(s) 255, 348, 425, 677, 698, 713, 1280
AluI AGCT 7 cut(s) 255, 348, 425, 677, 698, 713, 1280
Alw26I GTCTC 2 cut(s) 442, 786
AlwI GGATC 3 cut(s) 2, 41, 926
AoxI GGCC 5 cut(s) 361, 439, 553, 617, 805
ApeKI GCWGC 2 cut(s) 485, 1410
ApoI RAATTY 2 cut(s) 866, 1054
Asp700I GAANNNNTTC 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 907
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 1229
AvaII GGWCC 1 cut(s) 85
BanI GGYRCC 2 cut(s) 233, 907
BbvI GCAGC 2 cut(s) 472, 1422
BccI CCATC 4 cut(s) 149, 164, 586, 783
BceAI ACGGC 2 cut(s) 540, 792
BclI TGATCA 1 cut(s) 1128
BcoDI GTCTC 2 cut(s) 442, 786
BfaI CTAG 6 cut(s) 422, 455, 621, 1043, 1136, 1491
BisI GCNGC 3 cut(s) 442, 486, 1411
BlsI GCNGC 3 cut(s) 443, 487, 1412
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 5 cut(s) 125, 175, 235, 332, 909
BmsI GCATC 2 cut(s) 167, 193
BpmI CTGGAG 1 cut(s) 1268
BpuEI CTTGAG 1 cut(s) 235
BsaJI CCNNGG 4 cut(s) 81, 153, 808, 1515
BsaWI WCCGGW 1 cut(s) 910
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 285, 626, 969
Bse1I ACTGG 1 cut(s) 228
Bse3DI GCAATG 2 cut(s) 747, 1420
BseDI CCNNGG 4 cut(s) 81, 153, 808, 1515
BseGI GGATG 2 cut(s) 141, 1525
BseLI CCNNNNNNNGG 4 cut(s) 82, 285, 626, 969
BseMI GCAATG 2 cut(s) 747, 1420
BseMII CTCAG 4 cut(s) 270, 524, 917, 1173
BseNI ACTGG 1 cut(s) 228
BseX3I CGGCCG 1 cut(s) 439
BseXI GCAGC 2 cut(s) 472, 1422
BsgI GTGCAG 2 cut(s) 208, 513
Bsh1285I CGRYCG 1 cut(s) 442
BshFI GGCC 5 cut(s) 363, 441, 555, 619, 807
BshNI GGYRCC 2 cut(s) 233, 907
BsiEI CGRYCG 1 cut(s) 442
BsiSI CCGG 1 cut(s) 911
BslI CCNNNNNNNGG 4 cut(s) 82, 285, 626, 969
BsmAI GTCTC 2 cut(s) 442, 786
BsnI GGCC 5 cut(s) 363, 441, 555, 619, 807
Bsp143I GATC 5 cut(s) 7, 46, 268, 931, 1128
Bsp19I CCATGG 1 cut(s) 1515
BspACI CCGC 1 cut(s) 442
BspANI GGCC 5 cut(s) 363, 441, 555, 619, 807
BspCNI CTCAG 4 cut(s) 269, 525, 916, 1172
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 5 cut(s) 125, 175, 235, 332, 909
BspPI GGATC 3 cut(s) 2, 41, 926
BspQI GCTCTTC 1 cut(s) 800
BspT107I GGYRCC 2 cut(s) 233, 907
BsrDI GCAATG 2 cut(s) 747, 1420
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 4 cut(s) 81, 153, 808, 1515
BssMI GATC 5 cut(s) 7, 46, 268, 931, 1128
BssT1I CCWWGG 3 cut(s) 81, 153, 1515
Bst4CI ACNGT 1 cut(s) 1306
Bst6I CTCTTC 3 cut(s) 24, 800, 974
BstDEI CTNAG 5 cut(s) 256, 533, 903, 1076, 1159
BstDSI CCRYGG 2 cut(s) 808, 1515
BstF5I GGATG 2 cut(s) 141, 1525
BstKTI GATC 5 cut(s) 10, 49, 271, 934, 1131
BstMAI GTCTC 2 cut(s) 442, 786
BstMBI GATC 5 cut(s) 7, 46, 268, 931, 1128
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 3 cut(s) 231, 252, 491
BstNSI RCATGY 1 cut(s) 576
BstV1I GCAGC 2 cut(s) 472, 1422
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BstZI CGGCCG 1 cut(s) 439
BsuRI GGCC 5 cut(s) 363, 441, 555, 619, 807
BtgI CCRYGG 2 cut(s) 808, 1515
BtsCI GGATG 2 cut(s) 141, 1525
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 6 cut(s) 196, 220, 235, 530, 1167, 1311
CciI TCATGA 1 cut(s) 798
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 3 cut(s) 570, 726, 908
CspCI CAANNNNNGTGG 2 cut(s) 1107, 1142
CviAII CATG 7 cut(s) 216, 385, 573, 634, 705, 799, 1516
CviQI GTAC 3 cut(s) 570, 726, 908
DdeI CTNAG 5 cut(s) 256, 533, 903, 1076, 1159
DpnI GATC 5 cut(s) 9, 48, 270, 933, 1130
DpnII GATC 5 cut(s) 7, 46, 268, 931, 1128
DraIII CACNNNGTG 1 cut(s) 1508
EaeI YGGCCR 3 cut(s) 439, 553, 805
EagI CGGCCG 1 cut(s) 439
Eam1104I CTCTTC 3 cut(s) 24, 800, 974
EarI CTCTTC 3 cut(s) 24, 800, 974
EclXI CGGCCG 1 cut(s) 439
Eco130I CCWWGG 3 cut(s) 81, 153, 1515
Eco147I AGGCCT 2 cut(s) 363, 619
Eco32I GATATC 2 cut(s) 262, 1293
Eco47I GGWCC 1 cut(s) 85
Eco52I CGGCCG 1 cut(s) 439
Eco57I CTGAAG 2 cut(s) 746, 854
EcoRI GAATTC 1 cut(s) 866
EcoRV GATATC 2 cut(s) 262, 1293
EcoT14I CCWWGG 3 cut(s) 81, 153, 1515
ErhI CCWWGG 3 cut(s) 81, 153, 1515
FaeI CATG 7 cut(s) 219, 388, 576, 637, 708, 802, 1519
FatI CATG 7 cut(s) 215, 384, 572, 633, 704, 798, 1515
FauNDI CATATG 1 cut(s) 1429
FbaI TGATCA 1 cut(s) 1128
FblI GTMKAC 3 cut(s) 195, 275, 1026
Fnu4HI GCNGC 3 cut(s) 442, 486, 1411
FokI GGATG 2 cut(s) 128, 1532
Fsp4HI GCNGC 3 cut(s) 442, 486, 1411
FspBI CTAG 6 cut(s) 422, 455, 621, 1043, 1136, 1491
GluI GCNGC 3 cut(s) 442, 486, 1411
GsuI CTGGAG 1 cut(s) 1268
HaeIII GGCC 5 cut(s) 363, 441, 555, 619, 807
HapII CCGG 1 cut(s) 911
Hin1II CATG 7 cut(s) 219, 388, 576, 637, 708, 802, 1519
HinfI GANTC 8 cut(s) 296, 428, 537, 630, 779, 914, 1062, 1285
HpaII CCGG 1 cut(s) 911
HphI GGTGA 1 cut(s) 1229
Hpy166II GTNNAC 4 cut(s) 196, 276, 1027, 1302
Hpy188I TCNGA 4 cut(s) 259, 283, 325, 1290
Hpy188III TCNNGA 4 cut(s) 50, 799, 1272, 1461
Hpy8I GTNNAC 4 cut(s) 196, 276, 1027, 1302
HpyAV CCTTC 3 cut(s) 374, 943, 1119
HpyCH4III ACNGT 1 cut(s) 1306
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 252, 491
HpyF3I CTNAG 5 cut(s) 256, 533, 903, 1076, 1159
Hsp92II CATG 7 cut(s) 219, 388, 576, 637, 708, 802, 1519
KpnI GGTACC 1 cut(s) 911
Ksp22I TGATCA 1 cut(s) 1128
Kzo9I GATC 5 cut(s) 7, 46, 268, 931, 1128
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 1 cut(s) 1146
Lsp1109I GCAGC 2 cut(s) 472, 1422
LweI GCATC 2 cut(s) 167, 193
MaeI CTAG 6 cut(s) 422, 455, 621, 1043, 1136, 1491
MaeIII GTNAC 1 cut(s) 666
MalI GATC 5 cut(s) 9, 48, 270, 933, 1130
MboI GATC 5 cut(s) 7, 46, 268, 931, 1128
MflI RGATCY 1 cut(s) 46
MluCI AATT 9 cut(s) 93, 128, 300, 549, 700, 732, 866, 1054, 1239
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 6 cut(s) 35, 101, 583, 607, 1030, 1384
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 2 cut(s) 690, 774
MslI CAYNNNNRTG 3 cut(s) 214, 473, 1019
MspI CCGG 1 cut(s) 911
MwoI GCNNNNNNNGC 3 cut(s) 231, 252, 491
NcoI CCATGG 1 cut(s) 1515
NdeI CATATG 1 cut(s) 1429
NdeII GATC 5 cut(s) 7, 46, 268, 931, 1128
NlaIII CATG 7 cut(s) 219, 388, 576, 637, 708, 802, 1519
NlaIV GGNNCC 5 cut(s) 125, 175, 235, 332, 909
NmeAIII GCCGAG 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 666
NspI RCATGY 1 cut(s) 576
PagI TCATGA 1 cut(s) 798
PceI AGGCCT 2 cut(s) 363, 619
PciI ACATGT 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 800
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 7 cut(s) 296, 428, 537, 630, 914, 1062, 1285
PflMI CCANNNNNTGG 2 cut(s) 82, 969
PkrI GCNGC 3 cut(s) 443, 487, 1412
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
PscI ACATGT 1 cut(s) 572
PspN4I GGNNCC 5 cut(s) 125, 175, 235, 332, 909
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 3 cut(s) 571, 727, 909
RsaNI GTAC 3 cut(s) 570, 726, 908
RseI CAYNNNNRTG 3 cut(s) 214, 473, 1019
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 2 cut(s) 690, 774
SatI GCNGC 3 cut(s) 442, 486, 1411
Sau3AI GATC 5 cut(s) 7, 46, 268, 931, 1128
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 788
SfaNI GCATC 2 cut(s) 167, 193
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 3 cut(s) 214, 473, 1019
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
Sse9I AATT 9 cut(s) 93, 128, 300, 549, 700, 732, 866, 1054, 1239
SseBI AGGCCT 2 cut(s) 363, 619
SsiI CCGC 1 cut(s) 442
SspMI CTAG 6 cut(s) 422, 455, 621, 1043, 1136, 1491
StuI AGGCCT 2 cut(s) 363, 619
StyI CCWWGG 3 cut(s) 81, 153, 1515
TaaI ACNGT 1 cut(s) 1306
TasI AATT 9 cut(s) 93, 128, 300, 549, 700, 732, 866, 1054, 1239
TatI WGTACW 2 cut(s) 569, 725
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 7 cut(s) 296, 428, 537, 630, 914, 1062, 1285
Tru1I TTAA 2 cut(s) 690, 774
Tru9I TTAA 2 cut(s) 690, 774
TscAI CASTG 6 cut(s) 196, 227, 235, 537, 1167, 1311
TseFI GTSAC 1 cut(s) 666
TseI GCWGC 2 cut(s) 485, 1410
Tsp45I GTSAC 1 cut(s) 666
TspRI CASTG 6 cut(s) 196, 227, 235, 537, 1167, 1311
Van91I CCANNNNNTGG 2 cut(s) 82, 969
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 2 cut(s) 866, 1054
XceI RCATGY 1 cut(s) 576
XmiI GTMKAC 3 cut(s) 195, 275, 1026
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 6 cut(s) 422, 455, 621, 1043, 1136, 1491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.