Rroxscaffold_1G00055990

Organic cation carnitine transporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
77711177 .. 77712733
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055990.1

Sequence Viewer

Length: 1557 bp
ATGGCCGATCCAACTTCTCTTCTGCCTCAACCCAATAGAGAAGAAGATCCAGAAACTCCAAGCAACAATCTCCACCACTCCTTGGACCAAATAATTGAGCAGAGTGAAGCAAGTTTTGGTTGGAACCAATTCTTGCAATCCATTCTTGTTTCTTTAGCATCACTCTTTGATGGAACACAAACCTTCATCAGTGTCTTCACAGATGCCACACCTACCTGGCACTGCACCAGTGACACCACAACCTGCAACACAAGCTCAGACATCTGTGATCTGTCTACTTCTGATTGGGCTTGGGATTCAGTTTCCTCCAAGACAATCATATCAGATTGGAACCTCCAATGTTCAAGCTCATTCATCACAGGCCTTCCAACCTCGTCTTACTTCATGGGTGGTGTGATAGGTGGGTTTCTTCTTGGCACTCTAGCTGATTCCTCACTTGGCCGCAAGAGACTGCTAGTAATCTCTTGCATTACAATGTCTGTTGCTGCATTTGCAACAATCTTCTCTACAAATGTGTGGATTTACTCTGCACTGAGATTCGTAAGTGGAATTGGCCGTTCGTGTATTAGTACATGTGTGCTGGTGTTGTTGATGGAGAGAGTTGGAAGAAAATGGAGGCCTAGGGTTGGAATCATGCAGTTCTTCTTTTTTACACTTGGTTTTTTGTCACTACCAGCTATTGCTTACATTAACAGAGCTAATTCATGGAGAGCTTTGTATCTATGTACTTCAATTCCTGCAATGCTTTACTGCTTATTGCTTCAGTTCTTTGTTAAGGAGTCTCCAAGATGGCTCTTCATGAATGGCTGTGGAGAAGAAGCCATAGCAATACTGAAGAAATCTGCATTGTCAAACCCGAATAGTGAATTCAACACGGTGTTGTTGTCAGCAGACTTGCTCTCTAAGGTGCCGGAATCTACAAAATCTAGTGATCCATACAAGTCAATCAAGGACTTGTTTGCCAAGAAATGGGCTATGAAGAGAACACTGATAGTTATGGTGCTTGGTTTCGGCATTGGAATGGTCTACTATGGTATGCCACTAGGGGTTGGAAATTTAGGATTCAATATCTACCTGAGTGTTATGTTCAATGCTTTGTTAGAGATACCTTCATATCCACTCACATGGATCATACTGGAAAAATGGAGCAGGAAACTCTCAGTGCTTTGGTTTTGTTTGGTAAGTGGGATTTGTGGTGTGGTATGTGCTGTGGTGGGTGATAAGCAAAAAGTCATTAGAATTGTGCTGGAGTTGGCTTCTTTCTTTTGCTCACGAACAGCTTGGAATCTGATATCTATGTTTACAGTGGAGTTGTTCCCAACTTGTGTGAGGAACTCTGCTACATCTTTGTTGAGGCAGTCATATATTTTGAGTGCTGTATTTAGTTCAATGTTGGTTTCAGTTGGGAGCAGCAATGGGTTTCTTTCATATGGAGTTTTTGGAGTGGCTATATTTGTGTCTGGATTTTTTGTGGCTTTTCTGCCAGACACTAGAGGGGGAACACTTTGTGATACCATGGATGAACAAGAAAGAAAAGAGAATATGATTTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

518

Amino Acids

57.3

Weight (kDa)

7.38

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 86 - 502 7.5e-32 Sugar (and other) transporter
MFS_1 PF07690 116 - 452 7.4e-24 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017263)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14030
malus_domestica MD05G1238600.v1.1
prunus_persica Prupe.4G127600_v2.0.a1
pyrus_communis pycom05g21470
rosa_chinensis RchiOBHm_Chr5g0023351
rosa_laevigata RLG00000032715
rosa_multiflora Rmu_co8449133.1_g000001
rosa_roxburghii Rroxscaffold_1G00055990
rosa_rugosa Rorug05G0078600
rosa_samantha Rh5AG165200 Rh5CG179500 Rh5DG166100
rosa_wichuraiana Rw5G014880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 907
AccB7I CCANNNNNTGG 2 cut(s) 82, 969
AccI GTMKAC 2 cut(s) 275, 1026
AciI CCGC 1 cut(s) 442
AclWI GGATC 4 cut(s) 2, 41, 926, 1136
AcoI YGGCCR 3 cut(s) 3, 439, 553
AcsI RAATTY 2 cut(s) 866, 1054
AcuI CTGAAG 2 cut(s) 746, 854
AdeI CACNNNGTG 1 cut(s) 1508
AfaI GTAC 2 cut(s) 571, 727
AfiI CCNNNNNNNGG 3 cut(s) 82, 626, 969
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 6 cut(s) 345, 732, 871, 1066, 1090, 1389
AjnI CCWGG 1 cut(s) 215
AjuI GAANNNNNNNTTGG 3 cut(s) 99, 131, 1532
AluBI AGCT 7 cut(s) 255, 348, 425, 677, 698, 713, 1280
AluI AGCT 7 cut(s) 255, 348, 425, 677, 698, 713, 1280
Alw26I GTCTC 2 cut(s) 442, 786
AlwI GGATC 4 cut(s) 2, 41, 926, 1136
AoxI GGCC 5 cut(s) 3, 361, 439, 553, 617
ApeKI GCWGC 2 cut(s) 485, 1410
ApoI RAATTY 2 cut(s) 866, 1054
Asp700I GAANNNNTTC 1 cut(s) 128
AspA2I CCTAGG 1 cut(s) 620
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 1229
AvaII GGWCC 1 cut(s) 85
AvrII CCTAGG 1 cut(s) 620
BanI GGYRCC 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 472, 1422
BccI CCATC 3 cut(s) 164, 586, 783
BceAI ACGGC 1 cut(s) 540
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 442, 786
BfaI CTAG 6 cut(s) 422, 455, 621, 927, 1043, 1491
BfuAI ACCTGC 1 cut(s) 251
BisI GCNGC 3 cut(s) 442, 486, 1411
BlnI CCTAGG 1 cut(s) 620
BlsI GCNGC 3 cut(s) 443, 487, 1412
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 3 cut(s) 125, 332, 909
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 2 cut(s) 167, 193
BpiI GAAGAC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 1268
BsaJI CCNNGG 3 cut(s) 81, 620, 1515
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 626, 969
Bse1I ACTGG 2 cut(s) 228, 1140
Bse3DI GCAATG 2 cut(s) 747, 1420
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 3 cut(s) 81, 620, 1515
BseGI GGATG 1 cut(s) 1525
BseLI CCNNNNNNNGG 3 cut(s) 82, 626, 969
BseMI GCAATG 2 cut(s) 747, 1420
BseMII CTCAG 4 cut(s) 270, 524, 1067, 1173
BseNI ACTGG 2 cut(s) 228, 1140
BseXI GCAGC 2 cut(s) 472, 1422
BsgI GTGCAG 2 cut(s) 208, 513
BshFI GGCC 5 cut(s) 5, 363, 441, 555, 619
BshNI GGYRCC 1 cut(s) 907
BsiSI CCGG 1 cut(s) 911
BslI CCNNNNNNNGG 3 cut(s) 82, 626, 969
BsmAI GTCTC 2 cut(s) 442, 786
BsnI GGCC 5 cut(s) 5, 363, 441, 555, 619
Bsp143I GATC 5 cut(s) 7, 46, 268, 931, 1128
Bsp19I CCATGG 1 cut(s) 1515
BspACI CCGC 1 cut(s) 442
BspANI GGCC 5 cut(s) 5, 363, 441, 555, 619
BspCNI CTCAG 4 cut(s) 269, 525, 1068, 1172
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 3 cut(s) 125, 332, 909
BspMI ACCTGC 1 cut(s) 251
BspPI GGATC 4 cut(s) 2, 41, 926, 1136
BspQI GCTCTTC 1 cut(s) 800
BspT107I GGYRCC 1 cut(s) 907
BsrDI GCAATG 2 cut(s) 747, 1420
BsrI ACTGG 2 cut(s) 228, 1140
BssECI CCNNGG 3 cut(s) 81, 620, 1515
BssMI GATC 5 cut(s) 7, 46, 268, 931, 1128
BssT1I CCWWGG 3 cut(s) 81, 620, 1515
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 877, 1306
Bst6I CTCTTC 3 cut(s) 24, 800, 974
BstDEI CTNAG 5 cut(s) 256, 533, 903, 1076, 1159
BstDSI CCRYGG 1 cut(s) 1515
BstF5I GGATG 1 cut(s) 1525
BstKTI GATC 5 cut(s) 10, 49, 271, 934, 1131
BstMAI GTCTC 2 cut(s) 442, 786
BstMBI GATC 5 cut(s) 7, 46, 268, 931, 1128
BstMWI GCNNNNNNNGC 2 cut(s) 252, 491
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 215
BstV1I GCAGC 2 cut(s) 472, 1422
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 1125
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 5 cut(s) 5, 363, 441, 555, 619
BtgI CCRYGG 1 cut(s) 1515
BtsCI GGATG 1 cut(s) 1525
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 7 cut(s) 196, 220, 235, 530, 986, 1167, 1311
BveI ACCTGC 1 cut(s) 251
CciI TCATGA 1 cut(s) 798
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 570, 726
CviAII CATG 7 cut(s) 385, 573, 634, 705, 799, 1125, 1516
CviQI GTAC 2 cut(s) 570, 726
DdeI CTNAG 5 cut(s) 256, 533, 903, 1076, 1159
DpnI GATC 5 cut(s) 9, 48, 270, 933, 1130
DpnII GATC 5 cut(s) 7, 46, 268, 931, 1128
DraIII CACNNNGTG 1 cut(s) 1508
EaeI YGGCCR 3 cut(s) 3, 439, 553
Eam1104I CTCTTC 3 cut(s) 24, 800, 974
EarI CTCTTC 3 cut(s) 24, 800, 974
Eco130I CCWWGG 3 cut(s) 81, 620, 1515
Eco147I AGGCCT 2 cut(s) 363, 619
Eco32I GATATC 1 cut(s) 1293
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 746, 854
EcoRI GAATTC 1 cut(s) 866
EcoRII CCWGG 1 cut(s) 215
EcoRV GATATC 1 cut(s) 1293
EcoT14I CCWWGG 3 cut(s) 81, 620, 1515
ErhI CCWWGG 3 cut(s) 81, 620, 1515
FaeI CATG 7 cut(s) 388, 576, 637, 708, 802, 1128, 1519
FatI CATG 7 cut(s) 384, 572, 633, 704, 798, 1124, 1515
FauNDI CATATG 1 cut(s) 1429
FblI GTMKAC 2 cut(s) 275, 1026
Fnu4HI GCNGC 3 cut(s) 442, 486, 1411
FokI GGATG 1 cut(s) 1532
Fsp4HI GCNGC 3 cut(s) 442, 486, 1411
FspBI CTAG 6 cut(s) 422, 455, 621, 927, 1043, 1491
GluI GCNGC 3 cut(s) 442, 486, 1411
GsuI CTGGAG 1 cut(s) 1268
HaeIII GGCC 5 cut(s) 5, 363, 441, 555, 619
HapII CCGG 1 cut(s) 911
Hin1II CATG 7 cut(s) 388, 576, 637, 708, 802, 1128, 1519
HinfI GANTC 8 cut(s) 296, 428, 537, 630, 779, 914, 1062, 1285
HpaII CCGG 1 cut(s) 911
HphI GGTGA 1 cut(s) 1229
Hpy166II GTNNAC 3 cut(s) 276, 1027, 1302
Hpy188I TCNGA 4 cut(s) 259, 283, 325, 1290
Hpy188III TCNNGA 4 cut(s) 50, 799, 1272, 1461
Hpy8I GTNNAC 3 cut(s) 276, 1027, 1302
HpyAV CCTTC 3 cut(s) 193, 374, 1119
HpyCH4III ACNGT 2 cut(s) 877, 1306
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 491
HpyF3I CTNAG 5 cut(s) 256, 533, 903, 1076, 1159
Hsp92II CATG 7 cut(s) 388, 576, 637, 708, 802, 1128, 1519
Kzo9I GATC 5 cut(s) 7, 46, 268, 931, 1128
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 2 cut(s) 1146, 1407
Lsp1109I GCAGC 2 cut(s) 472, 1422
LweI GCATC 2 cut(s) 167, 193
MaeI CTAG 6 cut(s) 422, 455, 621, 927, 1043, 1491
MaeIII GTNAC 2 cut(s) 230, 666
MalI GATC 5 cut(s) 9, 48, 270, 933, 1130
MboI GATC 5 cut(s) 7, 46, 268, 931, 1128
MflI RGATCY 1 cut(s) 46
MluCI AATT 8 cut(s) 93, 128, 549, 700, 732, 866, 1054, 1239
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 6 cut(s) 35, 101, 392, 583, 607, 1030
MnlI CCTC 9 cut(s) 36, 316, 344, 382, 442, 609, 1323, 1347, 1487
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 2 cut(s) 690, 774
MslI CAYNNNNRTG 3 cut(s) 473, 1019, 1123
MspI CCGG 1 cut(s) 911
MspR9I CCNGG 1 cut(s) 217
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 252, 491
NcoI CCATGG 1 cut(s) 1515
NdeI CATATG 1 cut(s) 1429
NdeII GATC 5 cut(s) 7, 46, 268, 931, 1128
NlaIII CATG 7 cut(s) 388, 576, 637, 708, 802, 1128, 1519
NlaIV GGNNCC 3 cut(s) 125, 332, 909
NmuCI GTSAC 2 cut(s) 230, 666
NspI RCATGY 1 cut(s) 576
PagI TCATGA 1 cut(s) 798
PceI AGGCCT 2 cut(s) 363, 619
PciI ACATGT 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 800
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 7 cut(s) 296, 428, 537, 630, 914, 1062, 1285
PflMI CCANNNNNTGG 2 cut(s) 82, 969
PkrI GCNGC 3 cut(s) 443, 487, 1412
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
PscI ACATGT 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 125, 332, 909
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 46
RsaI GTAC 2 cut(s) 571, 727
RsaNI GTAC 2 cut(s) 570, 726
RseI CAYNNNNRTG 3 cut(s) 473, 1019, 1123
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 2 cut(s) 690, 774
SatI GCNGC 3 cut(s) 442, 486, 1411
Sau3AI GATC 5 cut(s) 7, 46, 268, 931, 1128
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 1 cut(s) 217
SfaNI GCATC 2 cut(s) 167, 193
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 3 cut(s) 473, 1019, 1123
Sse9I AATT 8 cut(s) 93, 128, 549, 700, 732, 866, 1054, 1239
SseBI AGGCCT 2 cut(s) 363, 619
SsiI CCGC 1 cut(s) 442
SspMI CTAG 6 cut(s) 422, 455, 621, 927, 1043, 1491
StuI AGGCCT 2 cut(s) 363, 619
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 3 cut(s) 81, 620, 1515
TaaI ACNGT 2 cut(s) 877, 1306
TasI AATT 8 cut(s) 93, 128, 549, 700, 732, 866, 1054, 1239
TatI WGTACW 2 cut(s) 569, 725
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 7 cut(s) 296, 428, 537, 630, 914, 1062, 1285
Tru1I TTAA 2 cut(s) 690, 774
Tru9I TTAA 2 cut(s) 690, 774
TscAI CASTG 7 cut(s) 196, 227, 235, 537, 993, 1167, 1311
TseFI GTSAC 2 cut(s) 230, 666
TseI GCWGC 2 cut(s) 485, 1410
Tsp45I GTSAC 2 cut(s) 230, 666
TspRI CASTG 7 cut(s) 196, 227, 235, 537, 993, 1167, 1311
Van91I CCANNNNNTGG 2 cut(s) 82, 969
VpaK11BI GGWCC 1 cut(s) 85
XapI RAATTY 2 cut(s) 866, 1054
XceI RCATGY 1 cut(s) 576
XmaJI CCTAGG 1 cut(s) 620
XmiI GTMKAC 2 cut(s) 275, 1026
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 6 cut(s) 422, 455, 621, 927, 1043, 1491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.