Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0020307

Physical Location & Seq

Genomic Coordinates Reverse (-)

8485377 .. 8487810

Gene Structure 2434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14114.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTCAAGTCCATGATGTCTTCTATGGAGGATGGAGAGATCAGCATATCAGCTTACGACACCGCATGGGTTGCTTTGGTCGAAGGCGTCAATGGAACTGGTTCACCTCAGTTCCCTTCCAGCCTCGAATGGATTGCCAACAACCAGCTTGAAGATGGCTCTTGGGGCTACAAGGACCTCTTCTCTGCTCACGATCGACTCATTAACACTCTCGCGTGTGTCGTTGCGTTAAAGTCATGGAATATCCACGCCGAAAAATGCTTCAAAGGAATGAAATTTTTCAAGGAAAACCTACACAAGATTGAAGACGAGAACATGGAGCACATACTTGTAGGGTTTGAAGTTACATTCCCTTCTCTCCTCGAAATAGCTCGAATCTTAAATCTTGAAGTACCTGATGATGACACACCTGTGTTGCGTGAGATTCGTGCCCGTAAAAATCTGAAACTCTCAAAGTCTCGATTGGAAAAAGCTTTTGAAACTCCAGTCAGAAGACGGGTCGTTTTTGTTTCTCCGGCATCTACTGCCTACGCATTGAAGCAGACGAAGGATCGAAACTGTATGTCGTATTTATCGAGAATTGTCCTGAAGTTCAACAGAGGAGCGCCTCATGCGTATCCCATCGATTTGTTCGAACGTATGTGGGTTGTAGATCGGTTGCAGAGGTTAGGATTGTCCAGATACTTGGAGCCGGAGATTAAGGAGTGTATATGCTACGTATCAAGCTGCGACGTGTTTGCCGAAGGAGTCACCTACCATCGAATCAGTTCGGTGACAACCCTGAACCTCATGGTCACACCTACCTGCCGCCATTGCTGTAAGCAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

277

Amino Acids

31.61

Weight (kDa)

8.04

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	171 - 244	5.2e-09	Terpene synthase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020307)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14114
malus_domestica	MD03G1263600.v1.1 MD11G1208500.v1.1
pyrus_communis	pycom03g21120
rosa_roxburghii	Rroxscaffold_7G00176550
rosa_samantha	Rh6DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	812
AccII	CGCG	1 cut(s)	215
AciI	CCGC	2 cut(s)	63, 808
AclWI	GGATC	1 cut(s)	558
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	608
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	393
AfeI	AGCGCT	1 cut(s)	827
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	9 cut(s)	152, 265, 283, 305, 341, 389, 479, 538, 595
AjiI	CACGTC	1 cut(s)	733
AleI	CACNNNNGTG	1 cut(s)	410
AluBI	AGCT	5 cut(s)	53, 148, 371, 473, 726
AluI	AGCT	5 cut(s)	53, 148, 371, 473, 726
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	1 cut(s)	558
Aor51HI	AGCGCT	1 cut(s)	827
ApeKI	GCWGC	2 cut(s)	726, 823
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	3 cut(s)	100, 278, 766
AspLEI	GCGC	2 cut(s)	607, 828
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	3 cut(s)	96, 742, 784
AsuII	TTCGAA	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	433
BbsI	GAAGAC	3 cut(s)	12, 312, 499
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	713
BccI	CCATC	4 cut(s)	26, 149, 629, 765
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 719, 753
BciVI	GTATCC	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	462
BfoI	RGCGCY	2 cut(s)	608, 829
BfuAI	ACCTGC	1 cut(s)	812
BfuI	GTATCC	1 cut(s)	627
BisI	GCNGC	3 cut(s)	727, 808, 824
BlsI	GCNGC	3 cut(s)	728, 809, 825
Bme18I	GGWCC	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	733
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	690
BmsI	GCATC	1 cut(s)	527
BpiI	GAAGAC	3 cut(s)	12, 312, 499
BpmI	CTGGAG	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	633
Bsa29I	ATCGAT	1 cut(s)	624
BsaAI	YACGTR	1 cut(s)	718
BsaHI	GRCGYC	1 cut(s)	87
Bse1I	ACTGG	2 cut(s)	103, 485
Bse3DI	GCAATG	1 cut(s)	811
BseCI	ATCGAT	1 cut(s)	624
BseGI	GGATG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	2 cut(s)	103, 485
BseRI	GAGGAG	2 cut(s)	350, 615
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	713
Bsh1236I	CGCG	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	196
BshVI	ATCGAT	1 cut(s)	624
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	515, 692
BsmAI	GTCTC	1 cut(s)	462
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	324, 433
Bsp143I	GATC	4 cut(s)	39, 193, 550, 652
BspACI	CCGC	2 cut(s)	63, 808
BspCNI	CTCAG	1 cut(s)	121
BspDI	ATCGAT	1 cut(s)	624
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	690
BspMI	ACCTGC	1 cut(s)	812
BspPI	GGATC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	633
BsrDI	GCAATG	1 cut(s)	811
BsrI	ACTGG	2 cut(s)	103, 485
BssMI	GATC	4 cut(s)	39, 193, 550, 652
BssNI	GRCGYC	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	560
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	2 cut(s)	71, 524
BstBAI	YACGTR	1 cut(s)	718
BstBI	TTCGAA	1 cut(s)	633
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	215
BstH2I	RGCGCY	2 cut(s)	608, 829
BstHHI	GCGC	2 cut(s)	607, 828
BstKTI	GATC	4 cut(s)	42, 196, 553, 655
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	4 cut(s)	39, 193, 550, 652
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 165, 524, 611, 813
BstSLI	GKGCMC	1 cut(s)	433
BstSNI	TACGTA	1 cut(s)	718
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	713
BstV2I	GAAGAC	3 cut(s)	12, 312, 499
BstXI	CCANNNNNNTGG	1 cut(s)	685
Bsu15I	ATCGAT	1 cut(s)	624
BsuI	GTATCC	1 cut(s)	627
BsuTUI	ATCGAT	1 cut(s)	624
BtrI	CACGTC	1 cut(s)	733
BtsCI	GGATG	1 cut(s)	37
BveI	ACCTGC	1 cut(s)	812
CfoI	GCGC	2 cut(s)	607, 828
Cfr13I	GGNCC	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	624
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	6 cut(s)	13, 66, 237, 316, 611, 790
CviJI	RGCY	9 cut(s)	53, 123, 148, 159, 168, 371, 473, 691, 726
CviKI_1	RGCY	9 cut(s)	53, 123, 148, 159, 168, 371, 473, 691, 726
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	4 cut(s)	41, 195, 552, 654
DpnII	GATC	4 cut(s)	39, 193, 550, 652
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco105I	TACGTA	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	175
Eco47III	AGCGCT	1 cut(s)	827
Eco57I	CTGAAG	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	175
FaeI	CATG	6 cut(s)	16, 69, 240, 319, 614, 793
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	6 cut(s)	12, 65, 236, 315, 610, 789
Fnu4HI	GCNGC	3 cut(s)	727, 808, 824
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	3 cut(s)	727, 808, 824
GlaI	GCGC	2 cut(s)	606, 827
GluI	GCNGC	3 cut(s)	727, 808, 824
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	2 cut(s)	608, 829
HapII	CCGG	2 cut(s)	515, 692
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	2 cut(s)	607, 828
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	6 cut(s)	16, 69, 240, 319, 614, 793
Hin6I	GCGC	2 cut(s)	605, 826
HinP1I	GCGC	2 cut(s)	605, 826
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	5 cut(s)	198, 375, 424, 747, 762
HpaII	CCGG	2 cut(s)	515, 692
HphI	GGTGA	3 cut(s)	96, 742, 784
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	444, 491
Hpy188III	TCNNGA	6 cut(s)	191, 386, 459, 576, 586, 678
Hpy8I	GTNNAC	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	5 cut(s)	77, 126, 363, 541, 737
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	3 cut(s)	637, 717, 732
HpyCH4V	TGCA	1 cut(s)	661
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 165, 524, 611, 813
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	3 cut(s)	637, 717, 732
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	16, 69, 240, 319, 614, 793
HspAI	GCGC	2 cut(s)	605, 826
Kzo9I	GATC	4 cut(s)	39, 193, 550, 652
LmnI	GCTCC	3 cut(s)	319, 602, 688
Lsp1109I	GCAGC	1 cut(s)	713
LweI	GCATC	1 cut(s)	527
MaeII	ACGT	3 cut(s)	637, 717, 732
MaeIII	GTNAC	4 cut(s)	343, 748, 772, 793
MalI	GATC	4 cut(s)	41, 195, 552, 654
MboI	GATC	4 cut(s)	39, 193, 550, 652
MboII	GAAGA	5 cut(s)	12, 164, 172, 317, 504
MhlI	GDGCHC	2 cut(s)	324, 433
MluCI	AATT	2 cut(s)	275, 579
MlyI	GAGTC	2 cut(s)	192, 756
MnlI	CCTC	9 cut(s)	22, 117, 134, 188, 371, 593, 618, 657, 797
MroXI	GAANNNNTTC	3 cut(s)	100, 278, 766
MseI	TTAA	4 cut(s)	204, 230, 380, 699
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	2 cut(s)	515, 692
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	5 cut(s)	71, 165, 524, 611, 813
NdeII	GATC	4 cut(s)	39, 193, 550, 652
NlaIII	CATG	6 cut(s)	16, 69, 240, 319, 614, 793
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	3 cut(s)	748, 772, 793
NspV	TTCGAA	1 cut(s)	633
OliI	CACNNNNGTG	1 cut(s)	410
PcsI	WCGNNNNNNNCGW	4 cut(s)	219, 572, 630, 738
PdmI	GAANNNNTTC	3 cut(s)	100, 278, 766
PfeI	GAWTC	3 cut(s)	375, 424, 762
PkrI	GCNGC	3 cut(s)	728, 809, 825
Ple19I	CGATCG	1 cut(s)	196
PleI	GAGTC	2 cut(s)	192, 755
PpsI	GAGTC	2 cut(s)	192, 755
Ppu21I	YACGTR	1 cut(s)	718
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
PvuI	CGATCG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	4 cut(s)	204, 230, 380, 699
SatI	GCNGC	3 cut(s)	727, 808, 824
Sau3AI	GATC	4 cut(s)	39, 193, 550, 652
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	2 cut(s)	192, 756
SduI	GDGCHC	2 cut(s)	324, 433
SfaNI	GCATC	1 cut(s)	527
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	410
SnaBI	TACGTA	1 cut(s)	718
Sse9I	AATT	2 cut(s)	275, 579
SsiI	CCGC	2 cut(s)	63, 808
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	3 cut(s)	640, 720, 735
TasI	AATT	2 cut(s)	275, 579
TauI	GCSGC	1 cut(s)	810
TfiI	GAWTC	3 cut(s)	375, 424, 762
Tru1I	TTAA	4 cut(s)	204, 230, 380, 699
Tru9I	TTAA	4 cut(s)	204, 230, 380, 699
TseFI	GTSAC	3 cut(s)	748, 772, 793
TseI	GCWGC	2 cut(s)	726, 823
Tsp45I	GTSAC	3 cut(s)	748, 772, 793
TspDTI	ATGAA	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmnI	GAANNNNTTC	3 cut(s)	100, 278, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.