Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0020307

Physical Location & Seq

Genomic Coordinates Reverse (-)

34917872 .. 34921129

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1263600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACAAAAGAGTTTTTCGCTACAAATGCAGTGCGGTTTCCAAACCCCGCTCTCAAGGATTTTGGAGAAATTAATAAGATCAAGCAACACGTGGAGACTGTCAAATCGATGTTGGAGTCGATGGAGGACGGAGAGATTACGATTTCGGCGTACGACACCGCTTGGGTGGCATTAGTGGAGGATATGGAAGGCAGTGGCTTGCCTCAGTTCCCATCCAGCCTCCAGTGGATTGCCAACAACCAACTGCCAGATGGTTCTTGGGGAGATAGTGAGATCTTCAATGCTCATGATCGCATCCTCAACACCATAGCTTGCGTTGTCGCACTCGAATCATGGAGCGTTCATCCCGACAAGTGCGAAAAAGGAATGACATATTTCAAGGAGAACATAAGCAAGCTTGGCAACGAGAATGCCGAACACATGCCAATCGGGTTCGAAGTTGCCTTTCCTTCGATTCTGGAATTGGCTAGGAGTTTAAACCTGGACGTGCCTGATGATTGTCCTGTGTTGCATGAGATTTACGCCATGAGAGATCTAAAGCTCACAAGGATACCGAGGGAAATAATGCACAAAGTACCCACAACACTTCTCCACAGCGTGGAAGGAATGGCAGGCTTGGACTGGGAAAAGCTTCTAAAACTGCAGTCCCAAGATGGCTCTTTCTTGTTCTCTCCAGCCTCCACTGCCTATGCACTCATGCAAACCAAAAATCCAAACTGCATGAATTATTTGTCCAAAGCTGTTCACAAGTTCACCGGCGGAGGTAAGCGTTGCTCTTTCAGATTTTCATTTGGTAAGAAAATGACAAGATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

273

Amino Acids

30.58

Weight (kDa)

5.78

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020307)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14114
malus_domestica	MD03G1263600.v1.1 MD11G1208500.v1.1
pyrus_communis	pycom03g21120
rosa_roxburghii	Rroxscaffold_7G00176550
rosa_samantha	Rh6DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	4 cut(s)	34, 48, 159, 759
AcvI	CACGTG	1 cut(s)	91
AdeI	CACNNNGTG	1 cut(s)	598
AfaI	GTAC	2 cut(s)	152, 576
AfiI	CCNNNNNNNGG	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	280, 379
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	5 cut(s)	311, 397, 541, 631, 740
AluI	AGCT	5 cut(s)	311, 397, 541, 631, 740
Alw26I	GTCTC	1 cut(s)	89
AseI	ATTAAT	1 cut(s)	72
Asp700I	GAANNNNTTC	1 cut(s)	630
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	435
BbrPI	CACGTG	1 cut(s)	91
BccI	CCATC	4 cut(s)	115, 220, 245, 647
BciT130I	CCWGG	1 cut(s)	482
BciVI	GTATCC	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	641
BfuI	GTATCC	1 cut(s)	543
BglII	AGATCT	2 cut(s)	273, 532
Bme1390I	CCNGG	1 cut(s)	482
BmgBI	CACGTC	1 cut(s)	487
BmrFI	CCNGG	1 cut(s)	482
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	631
BpmI	CTGGAG	2 cut(s)	206, 657
Bpu14I	TTCGAA	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	2 cut(s)	223, 626
BseBI	CCWGG	1 cut(s)	482
BseCI	ATCGAT	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	554
BseGI	GGATG	3 cut(s)	212, 294, 343
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	223, 626
BshVI	ATCGAT	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	756
BsiWI	CGTACG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	631
BsmI	GAATGC	1 cut(s)	415
Bsp119I	TTCGAA	1 cut(s)	435
Bsp143I	GATC	4 cut(s)	78, 273, 289, 532
BspACI	CCGC	4 cut(s)	34, 48, 159, 759
BspCNI	CTCAG	1 cut(s)	217
BspDI	ATCGAT	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	645
BspT104I	TTCGAA	1 cut(s)	435
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	755
BsrI	ACTGG	2 cut(s)	223, 626
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	1 cut(s)	554
BssMI	GATC	4 cut(s)	78, 273, 289, 532
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	91
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	4 cut(s)	200, 313, 395, 613
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	212, 294, 343
BstKTI	GATC	4 cut(s)	81, 276, 292, 535
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	4 cut(s)	78, 273, 289, 532
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 167, 399, 683
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	641
BstX2I	RGATCY	2 cut(s)	273, 532
BstYI	RGATCY	2 cut(s)	273, 532
Bsu15I	ATCGAT	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	543
BsuTUI	ATCGAT	1 cut(s)	107
BtrI	CACGTC	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	212, 294, 343
BtsI	GCAGTG	3 cut(s)	36, 199, 681
BtsIMutI	CAGTG	4 cut(s)	36, 199, 230, 681
Cac8I	GCNNGC	4 cut(s)	200, 313, 395, 613
CciI	TCATGA	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	755
ClaI	ATCGAT	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	151, 575
CviAII	CATG	7 cut(s)	287, 333, 421, 512, 526, 697, 721
CviQI	GTAC	2 cut(s)	151, 575
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	4 cut(s)	80, 275, 291, 534
DpnII	GATC	4 cut(s)	78, 273, 289, 532
DraI	TTTAAA	1 cut(s)	477
DraIII	CACNNNGTG	1 cut(s)	598
EciI	GGCGGA	1 cut(s)	774
Eco72I	CACGTG	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	480
FaeI	CATG	7 cut(s)	290, 336, 424, 515, 529, 700, 724
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	7 cut(s)	286, 332, 420, 511, 525, 696, 720
FauI	CCCGC	1 cut(s)	55
FokI	GGATG	3 cut(s)	199, 281, 330
FspBI	CTAG	1 cut(s)	468
GsuI	CTGGAG	2 cut(s)	206, 657
HapII	CCGG	1 cut(s)	756
Hin1II	CATG	7 cut(s)	290, 336, 424, 515, 529, 700, 724
HindIII	AAGCTT	2 cut(s)	395, 629
HinfI	GANTC	3 cut(s)	116, 329, 454
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	2 cut(s)	745, 753
Hpy188I	TCNGA	1 cut(s)	782
Hpy188III	TCNNGA	3 cut(s)	287, 347, 458
Hpy8I	GTNNAC	2 cut(s)	745, 753
HpyAV	CCTTC	3 cut(s)	182, 459, 596
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	2 cut(s)	90, 486
HpyCH4V	TGCA	7 cut(s)	29, 511, 568, 643, 692, 700, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 167, 399, 683
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	90, 486
Hsp92II	CATG	7 cut(s)	290, 336, 424, 515, 529, 700, 724
Kzo9I	GATC	4 cut(s)	78, 273, 289, 532
LmnI	GCTCC	1 cut(s)	336
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	2 cut(s)	90, 486
MalI	GATC	4 cut(s)	80, 275, 291, 534
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	4 cut(s)	78, 273, 289, 532
MboII	GAAGA	1 cut(s)	268
MflI	RGATCY	2 cut(s)	273, 532
MluCI	AATT	4 cut(s)	69, 461, 724, 814
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	118, 172, 213, 230, 308, 549, 688, 755
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	4 cut(s)	72, 476, 812, 817
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	1 cut(s)	482
MssI	GTTTAAAC	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	4 cut(s)	26, 167, 399, 683
NdeII	GATC	4 cut(s)	78, 273, 289, 532
NlaIII	CATG	7 cut(s)	290, 336, 424, 515, 529, 700, 724
NspI	RCATGY	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	435
PagI	TCATGA	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 411
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	329, 454
Pfl23II	CGTACG	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	598
PleI	GAGTC	1 cut(s)	124
PmaCI	CACGTG	1 cut(s)	91
PmeI	GTTTAAAC	1 cut(s)	477
PmlI	CACGTG	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	480
PspCI	CACGTG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	480
PspLI	CGTACG	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	645
PsuI	RGATCY	2 cut(s)	273, 532
RsaI	GTAC	2 cut(s)	152, 576
RsaNI	GTAC	2 cut(s)	151, 575
SaqAI	TTAA	4 cut(s)	72, 476, 812, 817
Sau3AI	GATC	4 cut(s)	78, 273, 289, 532
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	482
SetI	ASST	9 cut(s)	93, 313, 399, 483, 489, 543, 633, 742, 766
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	641
SfuI	TTCGAA	1 cut(s)	435
SgrAI	CRCCGGYG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	4 cut(s)	69, 461, 724, 814
SsiI	CCGC	4 cut(s)	34, 48, 159, 759
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	2 cut(s)	93, 489
TaqI	TCGA	5 cut(s)	107, 119, 327, 435, 452
TasI	AATT	4 cut(s)	69, 461, 724, 814
TfiI	GAWTC	2 cut(s)	329, 454
Tru1I	TTAA	4 cut(s)	72, 476, 812, 817
Tru9I	TTAA	4 cut(s)	72, 476, 812, 817
TscAI	CASTG	4 cut(s)	36, 199, 230, 688
TspDTI	ATGAA	3 cut(s)	332, 737, 777
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	4 cut(s)	36, 199, 230, 688
Van91I	CCANNNNNTGG	1 cut(s)	598
VspI	ATTAAT	1 cut(s)	72
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	2 cut(s)	248, 255
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.