Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0020307

Physical Location & Seq

Genomic Coordinates Forward (+)

16134974 .. 16142226

Gene Structure 7253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACAACTCTGCATCGACCCAGATCATCAAGGAGCTTGTGGACTCCGTCAAGTCCATCCTGTCTTCTATGGAGGATGGGGAGATCAGCATATCAGCGTACGATACAGCATGGGTTGCTTTGGTCGAAGACGTCGATGGAACTTGTTCAACTCATTTCCCTTACAGCCTCGAACGGATTGCCAACAACCGGCCAGCTTGAAGATGTCTGCTCTTGGGGCTACGAGGACGTCTTCTCTGCCCACGATCGAATCATCAGCACCCTAGCCTGCATCGTTGCGTTGAAATCGTGGAATCTCCACCACGACAAATGCGACAAAGAAGAAAGGAAAAGGAAGAGATGGTGGCTAGTTGATGGCAGAAGATGTCGTTCTCTCCTTTTTCTCTTGTGCGGCAGAACTTACCAAGATAAATGGGATACCAATCCCATGACTCACGCTAACACAATGTGGCCACATCACCGCTTTATAGCCTTGAAGGAATGGCAGGTCTCGGCGGGAAAACCTTTCGAAACTCTAGTCCGGAGACGGGGTCGTTTCTCTTTCTCCGGCGTCTCTGCGCATCTACGCATTGCAGCGGACGAAGGATCGCAACTGCATGTCGTCCGTCAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

204

Amino Acids

23.73

Weight (kDa)

9.92

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020307)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14114
malus_domestica	MD03G1263600.v1.1 MD11G1208500.v1.1
pyrus_communis	pycom03g21120
rosa_roxburghii	Rroxscaffold_7G00176550
rosa_samantha	Rh6DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	134, 231
Acc16I	TGCGCA	1 cut(s)	558
Acc36I	ACCTGC	1 cut(s)	475
AccIII	TCCGGA	1 cut(s)	519
AciI	CCGC	4 cut(s)	390, 460, 494, 575
AclWI	GGATC	1 cut(s)	592
AcoI	YGGCCR	2 cut(s)	190, 449
AcyI	GRCGYC	3 cut(s)	131, 228, 549
AdeI	CACNNNGTG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	188, 526
AgsI	TTSAA	4 cut(s)	149, 200, 283, 475
AluBI	AGCT	2 cut(s)	36, 196
AluI	AGCT	2 cut(s)	36, 196
Alw26I	GTCTC	3 cut(s)	493, 517, 556
AlwI	GGATC	1 cut(s)	592
Aor13HI	TCCGGA	1 cut(s)	519
AoxI	GGCC	2 cut(s)	190, 449
ApeKI	GCWGC	1 cut(s)	572
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	559
AsuHPI	GGTGA	1 cut(s)	449
AsuII	TTCGAA	1 cut(s)	507
BalI	TGGCCA	1 cut(s)	451
BbsI	GAAGAC	3 cut(s)	56, 134, 223
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	5 cut(s)	64, 70, 130, 333, 347
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciVI	GTATCC	1 cut(s)	409
BcoDI	GTCTC	3 cut(s)	493, 517, 556
BfaI	CTAG	3 cut(s)	263, 347, 515
BfuAI	ACCTGC	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	2 cut(s)	391, 573
BlsI	GCNGC	2 cut(s)	392, 574
BmsI	GCATC	3 cut(s)	22, 279, 568
BpiI	GAAGAC	3 cut(s)	56, 134, 223
Bpu14I	TTCGAA	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	420
BsaHI	GRCGYC	3 cut(s)	131, 228, 549
BsaI	GGTCTC	1 cut(s)	493
BsaWI	WCCGGW	1 cut(s)	519
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 526
Bse118I	RCCGGY	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	519
BseGI	GGATG	2 cut(s)	56, 81
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	2 cut(s)	188, 526
BseMI	GCAATG	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	192, 451
BsiEI	CGRYCG	1 cut(s)	247
BsiSI	CCGG	3 cut(s)	189, 520, 546
BsiWI	CGTACG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	188, 526
BsmAI	GTCTC	3 cut(s)	493, 517, 556
BsmBI	CGTCTC	2 cut(s)	517, 556
BsnI	GGCC	2 cut(s)	192, 451
Bso31I	GGTCTC	1 cut(s)	493
Bsp119I	TTCGAA	1 cut(s)	507
Bsp13I	TCCGGA	1 cut(s)	519
Bsp143I	GATC	4 cut(s)	23, 83, 244, 584
BspACI	CCGC	4 cut(s)	390, 460, 494, 575
BspANI	GGCC	2 cut(s)	192, 451
BspEI	TCCGGA	1 cut(s)	519
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	1 cut(s)	592
BspT104I	TTCGAA	1 cut(s)	507
BspTNI	GGTCTC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	4 cut(s)	23, 83, 244, 584
BssNI	GRCGYC	3 cut(s)	131, 228, 549
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	3 cut(s)	131, 228, 549
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	194, 268
BstF5I	GGATG	2 cut(s)	56, 81
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	4 cut(s)	26, 86, 247, 587
BstMAI	GTCTC	3 cut(s)	493, 517, 556
BstMBI	GATC	4 cut(s)	23, 83, 244, 584
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 216
BstNSI	RCATGY	1 cut(s)	599
BstV1I	GCAGC	1 cut(s)	584
BstV2I	GAAGAC	3 cut(s)	56, 134, 223
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	192, 451
BtsCI	GGATG	2 cut(s)	56, 81
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	194, 268
CfoI	GCGC	1 cut(s)	559
Cfr10I	RCCGGY	1 cut(s)	188
CseI	GACGC	1 cut(s)	538
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	3 cut(s)	110, 427, 596
CviJI	RGCY	9 cut(s)	36, 167, 192, 196, 219, 266, 346, 451, 470
CviKI_1	RGCY	9 cut(s)	36, 167, 192, 196, 219, 266, 346, 451, 470
CviQI	GTAC	1 cut(s)	99
DpnI	GATC	4 cut(s)	25, 85, 246, 586
DpnII	GATC	4 cut(s)	23, 83, 244, 584
DraIII	CACNNNGTG	1 cut(s)	447
EaeI	YGGCCR	2 cut(s)	190, 449
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	493
Esp3I	CGTCTC	2 cut(s)	517, 556
FaeI	CATG	3 cut(s)	113, 430, 599
FaiI	YATR	6 cut(s)	70, 91, 111, 428, 467, 597
FatI	CATG	3 cut(s)	109, 426, 595
FauI	CCCGC	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	391, 573
FokI	GGATG	2 cut(s)	43, 88
Fsp4HI	GCNGC	2 cut(s)	391, 573
FspBI	CTAG	3 cut(s)	263, 347, 515
FspI	TGCGCA	1 cut(s)	558
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	2 cut(s)	391, 573
HaeIII	GGCC	2 cut(s)	192, 451
HapII	CCGG	3 cut(s)	189, 520, 546
HgaI	GACGC	1 cut(s)	538
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	3 cut(s)	131, 228, 549
Hin1II	CATG	3 cut(s)	113, 430, 599
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HinfI	GANTC	4 cut(s)	43, 249, 292, 430
HpaII	CCGG	3 cut(s)	189, 520, 546
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	520, 608
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	469, 575
HpyCH4IV	ACGT	2 cut(s)	131, 228
HpyCH4V	TGCA	4 cut(s)	13, 270, 572, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 216
HpySE526I	ACGT	2 cut(s)	131, 228
Hsp92I	GRCGYC	3 cut(s)	131, 228, 549
Hsp92II	CATG	3 cut(s)	113, 430, 599
HspAI	GCGC	1 cut(s)	557
Kpn2I	TCCGGA	1 cut(s)	519
Kzo9I	GATC	4 cut(s)	23, 83, 244, 584
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	8 cut(s)	34, 73, 202, 206, 280, 470, 533, 559
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	3 cut(s)	22, 279, 568
MaeI	CTAG	3 cut(s)	263, 347, 515
MaeII	ACGT	2 cut(s)	131, 228
MalI	GATC	4 cut(s)	25, 85, 246, 586
MboI	GATC	4 cut(s)	23, 83, 244, 584
MboII	GAAGA	7 cut(s)	56, 139, 212, 223, 332, 346, 372
MlsI	TGGCCA	1 cut(s)	451
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	2 cut(s)	37, 424
MnlI	CCTC	3 cut(s)	66, 178, 217
Mox20I	TGGCCA	1 cut(s)	451
MroI	TCCGGA	1 cut(s)	519
MroXI	GAANNNNTTC	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	451
Msp20I	TGGCCA	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	3 cut(s)	189, 520, 546
MwoI	GCNNNNNNNGC	2 cut(s)	115, 216
NdeII	GATC	4 cut(s)	23, 83, 244, 584
NlaIII	CATG	3 cut(s)	113, 430, 599
NmeAIII	GCCGAG	1 cut(s)	470
NsbI	TGCGCA	1 cut(s)	558
NspI	RCATGY	1 cut(s)	599
NspV	TTCGAA	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 309
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	249, 292
Pfl23II	CGTACG	1 cut(s)	98
PflFI	GACNNNGTC	2 cut(s)	46, 528
PkrI	GCNGC	2 cut(s)	392, 574
Ple19I	CGATCG	1 cut(s)	247
PleI	GAGTC	2 cut(s)	37, 424
PpsI	GAGTC	2 cut(s)	37, 424
PspLI	CGTACG	1 cut(s)	98
PsyI	GACNNNGTC	2 cut(s)	46, 528
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SatI	GCNGC	2 cut(s)	391, 573
Sau3AI	GATC	4 cut(s)	23, 83, 244, 584
SchI	GAGTC	2 cut(s)	37, 424
SetI	ASST	6 cut(s)	38, 134, 198, 231, 489, 505
SfaNI	GCATC	3 cut(s)	22, 279, 568
SfuI	TTCGAA	1 cut(s)	507
SsiI	CCGC	4 cut(s)	390, 460, 494, 575
SspMI	CTAG	3 cut(s)	263, 347, 515
TaiI	ACGT	2 cut(s)	134, 231
TaqI	TCGA	6 cut(s)	16, 125, 134, 170, 247, 507
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	249, 292
TseI	GCWGC	1 cut(s)	572
TspGWI	ACGGA	3 cut(s)	36, 189, 593
Tth111I	GACNNNGTC	2 cut(s)	46, 528
XceI	RCATGY	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	3 cut(s)	263, 347, 515
ZraI	GACGTC	2 cut(s)	132, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.