Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0020307

Physical Location & Seq

Genomic Coordinates Reverse (-)

21431049 .. 21431800

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTGGAGTCGATGGAGGACGGAGAGATTACGATTTCGGCGTACGACACCGCTTGGGTGGCGTTAGTGGAGGATATGGAAGGCAGTGGCTTGCCTCAGTTCCCATCCAGCCTCCAGTGGATTGCCAACAACCAACTGCCAGATGGTTCTTGGGGAGATAGTGTGATCTTCACTGCTCATGATCGCATCCTCAACACAATAGCTTGCGTTGTCGCACTCAAATCATGGAGCCTTCATCCCGACAAGTGCGAAAAAGGAATGACATATTTCAAGGAGAACATAAGCAAGCTTGGCAACGAGAATGCCGAACACATGCCAATCGGGTTCGAAGTTGCTTTTCCCTCGATTCTCGAATTGGCTAGGAGTTTAAACCTGGACGTGCCTGATGATTGTCCTGTGTTGCATGAGATTTACGCCATGAGAGATCTAAAGCTCACAAGGTATATGTATACACGTCTCATACTTTTTTGGAATTTTAATGTTTGTTTTTCTGTGAGAGTTAAAAAGCAACCTTATCCACGGTGGATATATTATAATTTGGTCTGTTGGGGGTGTGCGAACTCTTTTACATGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

193

Amino Acids

22.01

Weight (kDa)

4.93

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020307)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14114
malus_domestica	MD03G1263600.v1.1 MD11G1208500.v1.1
pyrus_communis	pycom03g21120
rosa_roxburghii	Rroxscaffold_7G00176550
rosa_samantha	Rh6DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	449
AciI	CCGC	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	2 cut(s)	44, 574
AflIII	ACRYGT	2 cut(s)	452, 569
AgsI	TTSAA	1 cut(s)	271
AjiI	CACGTC	2 cut(s)	379, 455
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	3 cut(s)	203, 289, 433
AluI	AGCT	3 cut(s)	203, 289, 433
Alw26I	GTCTC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	472
AsuII	TTCGAA	1 cut(s)	327
BccI	CCATC	3 cut(s)	7, 112, 137
BciT130I	CCWGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	1 cut(s)	360
BglII	AGATCT	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	374
BmgBI	CACGTC	2 cut(s)	379, 455
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	518
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bse1I	ACTGG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	3 cut(s)	104, 186, 235
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	115
BsiWI	CGTACG	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	461
BsmBI	CGTCTC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	165, 181, 424
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	3 cut(s)	165, 181, 424
BssNAI	GTATAC	1 cut(s)	450
Bst1107I	GTATAC	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	522
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	92, 205, 287
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	518
BstF5I	GGATG	3 cut(s)	104, 186, 235
BstKTI	GATC	3 cut(s)	168, 184, 427
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	3 cut(s)	165, 181, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 291
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	2 cut(s)	316, 573
BstSCI	CCNGG	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZ17I	GTATAC	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	518
BtrI	CACGTC	2 cut(s)	379, 455
BtsCI	GGATG	3 cut(s)	104, 186, 235
BtsI	GCAGTG	2 cut(s)	91, 171
BtsIMutI	CAGTG	3 cut(s)	91, 122, 171
Cac8I	GCNNGC	3 cut(s)	92, 205, 287
CciI	TCATGA	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	43, 573
CviAII	CATG	6 cut(s)	179, 225, 313, 404, 418, 570
CviJI	RGCY	7 cut(s)	90, 111, 203, 231, 289, 359, 433
CviKI_1	RGCY	7 cut(s)	90, 111, 203, 231, 289, 359, 433
CviQI	GTAC	2 cut(s)	43, 573
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	167, 183, 426
DpnII	GATC	3 cut(s)	165, 181, 424
DraI	TTTAAA	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	461
FaeI	CATG	6 cut(s)	182, 228, 316, 407, 421, 573
FatI	CATG	6 cut(s)	178, 224, 312, 403, 417, 569
FblI	GTMKAC	1 cut(s)	449
FokI	GGATG	3 cut(s)	91, 173, 222
FspBI	CTAG	1 cut(s)	360
GsuI	CTGGAG	1 cut(s)	98
Hin1II	CATG	6 cut(s)	182, 228, 316, 407, 421, 573
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	2 cut(s)	8, 346
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188III	TCNNGA	3 cut(s)	179, 239, 350
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	2 cut(s)	74, 242
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	2 cut(s)	378, 454
HpyCH4V	TGCA	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 291
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	2 cut(s)	378, 454
Hsp92II	CATG	6 cut(s)	182, 228, 316, 407, 421, 573
Kzo9I	GATC	3 cut(s)	165, 181, 424
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	7 cut(s)	121, 128, 153, 359, 386, 396, 408
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	378, 454
MalI	GATC	3 cut(s)	167, 183, 426
MboI	GATC	3 cut(s)	165, 181, 424
MboII	GAAGA	1 cut(s)	160
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	3 cut(s)	353, 472, 535
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	6 cut(s)	10, 64, 105, 122, 200, 352
MseI	TTAA	4 cut(s)	368, 477, 501, 577
MspR9I	CCNGG	1 cut(s)	374
MssI	GTTTAAAC	1 cut(s)	369
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	59, 291
NdeII	GATC	3 cut(s)	165, 181, 424
NlaIII	CATG	6 cut(s)	182, 228, 316, 407, 421, 573
NlaIV	GGNNCC	1 cut(s)	230
NspI	RCATGY	2 cut(s)	316, 573
NspV	TTCGAA	1 cut(s)	327
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 303
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	346
Pfl23II	CGTACG	1 cut(s)	42
PleI	GAGTC	1 cut(s)	16
PmeI	GTTTAAAC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspLI	CGTACG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	2 cut(s)	44, 574
RsaNI	GTAC	2 cut(s)	43, 573
SaqAI	TTAA	4 cut(s)	368, 477, 501, 577
Sau3AI	GATC	3 cut(s)	165, 181, 424
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	374
SetI	ASST	8 cut(s)	205, 291, 375, 381, 435, 443, 457, 514
SfaNI	GCATC	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	327
Sse9I	AATT	3 cut(s)	353, 472, 535
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	2 cut(s)	381, 457
TaqI	TCGA	4 cut(s)	11, 327, 344, 351
TasI	AATT	3 cut(s)	353, 472, 535
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	4 cut(s)	368, 477, 501, 577
Tru9I	TTAA	4 cut(s)	368, 477, 501, 577
TscAI	CASTG	3 cut(s)	91, 122, 178
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	91, 122, 178
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	2 cut(s)	316, 573
XcmI	CCANNNNNNNNNTGG	2 cut(s)	140, 147
XmiI	GTMKAC	1 cut(s)	449
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.