Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0020307

Physical Location & Seq

Genomic Coordinates Forward (+)

30366355 .. 30367182

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1208500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGCAGCTCCTATGGATTTTCAATCGATTAATAAGATCAAGGAACATGTTGAATCCATTAGATCAACGTTGGTTTCGATGGAGGACGGGGAGATATCAATCTCGGCATACGACACCGCATGGGTGGCTAGCTTTAGTGGAAGATATTGAGGGTGAGGGAAGTGGCCTGCCCCAGTTTCCATTCAGCCTCGATTGGATTGCCAACAATCAGCTGCCAGATGGTTCTTGGGGAGATAGTGAAAGTTTCACTTCTCCTGATCGCATCATCAACACCATTGCTTGTGCAGTAGCACTCAAATCGTGGAACGTTCATCCTGGAAAATGCGAAAATGGAATGGCATATTTCAAGAACATAAGTAATCTTAGGAACGAGAATGCTGTGCACATGCCGTTCGGGTTTGAAGTTGCTTTTCCTTCAATTCTTGAATTAGCTCGGAGTTTAAACCTGGAGGTACCTGATGACTGTCCTGTGTTGAATGAGATTTATGCCATGAGAAATATAAAGCTCGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009536 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009905 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016853 GO:0016872 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

173

Amino Acids

19.86

Weight (kDa)

6.42

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020307)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14114
malus_domestica	MD03G1263600.v1.1 MD11G1208500.v1.1
pyrus_communis	pycom03g21120
rosa_roxburghii	Rroxscaffold_7G00176550
rosa_samantha	Rh6DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	454
AciI	CCGC	1 cut(s)	119
AclI	AACGTT	2 cut(s)	70, 309
AfaI	GTAC	1 cut(s)	456
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	7 cut(s)	25, 55, 349, 404, 420, 428, 478
AjnI	CCWGG	2 cut(s)	316, 447
AluBI	AGCT	5 cut(s)	10, 134, 214, 434, 508
AluI	AGCT	5 cut(s)	10, 134, 214, 434, 508
Alw21I	GWGCWC	1 cut(s)	387
Alw44I	GTGCAC	1 cut(s)	383
AoxI	GGCC	1 cut(s)	166
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	7, 214
AseI	ATTAAT	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	167
AsuNHI	GCTAGC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	454
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	19, 201
BccI	CCATC	2 cut(s)	75, 215
BceAI	ACGGC	1 cut(s)	376
BcgI	CGANNNNNNTGC	4 cut(s)	182, 216, 282, 316
BciT130I	CCWGG	2 cut(s)	318, 449
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	2 cut(s)	8, 215
BlsI	GCNGC	2 cut(s)	9, 216
Bme1390I	CCNGG	2 cut(s)	318, 449
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	2 cut(s)	318, 449
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	273
BmtI	GCTAGC	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	470
Bsa29I	ATCGAT	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	318, 449
BseCI	ATCGAT	1 cut(s)	28
BseGI	GGATG	1 cut(s)	313
BseJI	GATNNNNATC	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	19, 201
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	454
BshVI	ATCGAT	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	38, 64, 259
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	1 cut(s)	168
BspDI	ATCGAT	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	456
BspOI	GCTAGC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	3 cut(s)	38, 64, 259
Bst2UI	CCWGG	2 cut(s)	318, 449
Bst4CI	ACNGT	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	132, 170
BstDEI	CTNAG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	3 cut(s)	41, 67, 262
BstMBI	GATC	3 cut(s)	38, 64, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	318, 449
BstNSI	RCATGY	2 cut(s)	52, 391
BstSCI	CCNGG	2 cut(s)	316, 447
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	19, 201
Bsu15I	ATCGAT	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	168
BsuTUI	ATCGAT	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	132, 170
ClaI	ATCGAT	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	455
CviAII	CATG	4 cut(s)	49, 122, 388, 493
CviJI	RGCY	8 cut(s)	10, 130, 134, 168, 189, 214, 434, 508
CviKI_1	RGCY	8 cut(s)	10, 130, 134, 168, 189, 214, 434, 508
CviQI	GTAC	1 cut(s)	455
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	3 cut(s)	40, 66, 261
DpnII	GATC	3 cut(s)	38, 64, 259
DraI	TTTAAA	1 cut(s)	444
Eco32I	GATATC	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	316, 447
EcoRV	GATATC	1 cut(s)	98
FaeI	CATG	4 cut(s)	52, 125, 391, 496
FalI	AAGNNNNNCTT	2 cut(s)	235, 267
FatI	CATG	4 cut(s)	48, 121, 387, 492
Fnu4HI	GCNGC	2 cut(s)	8, 215
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	8, 215
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	2 cut(s)	8, 215
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	52, 125, 391, 496
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	3 cut(s)	257, 349, 425
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	426
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	2 cut(s)	70, 309
HpyCH4V	TGCA	2 cut(s)	287, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	2 cut(s)	70, 309
Hsp92II	CATG	4 cut(s)	52, 125, 391, 496
KpnI	GGTACC	1 cut(s)	458
Kzo9I	GATC	3 cut(s)	38, 64, 259
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	2 cut(s)	19, 201
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	2 cut(s)	70, 309
MalI	GATC	3 cut(s)	40, 66, 261
MboI	GATC	3 cut(s)	38, 64, 259
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	2 cut(s)	420, 428
MnlI	CCTC	5 cut(s)	78, 145, 151, 200, 445
MseI	TTAA	2 cut(s)	32, 443
MspA1I	CMGCKG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	318, 449
MssI	GTTTAAAC	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	318, 449
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	3 cut(s)	38, 64, 259
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	4 cut(s)	52, 125, 391, 496
NlaIV	GGNNCC	1 cut(s)	456
NmeAIII	GCCGAG	1 cut(s)	85
NspI	RCATGY	2 cut(s)	52, 391
PciI	ACATGT	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	55
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	9, 216
PmeI	GTTTAAAC	1 cut(s)	444
PscI	ACATGT	1 cut(s)	48
PshBI	ATTAAT	1 cut(s)	32
Psp1406I	AACGTT	2 cut(s)	70, 309
Psp6I	CCWGG	2 cut(s)	316, 447
PspGI	CCWGG	2 cut(s)	316, 447
PspN4I	GGNNCC	1 cut(s)	456
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	32, 443
SatI	GCNGC	2 cut(s)	8, 215
Sau3AI	GATC	3 cut(s)	38, 64, 259
ScrFI	CCNGG	2 cut(s)	318, 449
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	1 cut(s)	273
Sse9I	AATT	2 cut(s)	420, 428
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	316, 447
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	2 cut(s)	73, 312
TaqI	TCGA	4 cut(s)	28, 79, 192, 510
TasI	AATT	2 cut(s)	420, 428
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	32, 443
Tru9I	TTAA	2 cut(s)	32, 443
TseI	GCWGC	2 cut(s)	7, 214
TspDTI	ATGAA	2 cut(s)	17, 302
VneI	GTGCAC	1 cut(s)	383
VspI	ATTAAT	1 cut(s)	32
XceI	RCATGY	2 cut(s)	52, 391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.