Rh6DG327000

Belongs to the terpene synthase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
53155581 .. 53155932
352 bp
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UTR
Exon/CDS
Intron
Rh6DG327000.1

Sequence Viewer

Length: 255 bp
ATGGAACTTGTTCACCTCATTTCCCTTACAGCCTCGAATGGATTGCCAACAACCGGCCAGCTTGAAGATGGCTCTTGGGGCTACGAGGACGTCTTCTCTGCCCAAGATCGAATCATCAGCACCCTAGCCTGCATCGTTGCGTTGAAATCGTGGAATCTCCACCAGGACAAATGCGACAAAGGAATGAGGTTTTTCCGGGAAAACCTAGACAAAATTGAAGACGAGAATAGTGAGCACATGCCTATAGCCCTATAG

Protein Analysis

84

Amino Acids

9.49

Weight (kDa)

4.66

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020307)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14114
malus_domestica MD03G1263600.v1.1 MD11G1208500.v1.1
pyrus_communis pycom03g21120
rosa_roxburghii Rroxscaffold_7G00176550
rosa_samantha Rh6DG327000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 3 cut(s) 65, 145, 218
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw21I GWGCWC 1 cut(s) 237
AoxI GGCC 1 cut(s) 55
Asp700I GAANNNNTTC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 85, 225
Bbv12I GWGCWC 1 cut(s) 237
BccI CCATC 1 cut(s) 62
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 1 cut(s) 164
BcnI CCSGG 1 cut(s) 197
BfaI CTAG 2 cut(s) 125, 206
BfmI CTRYAG 2 cut(s) 243, 251
Bme1390I CCNGG 2 cut(s) 164, 197
BmrFI CCNGG 2 cut(s) 164, 197
BmsI GCATC 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 85, 225
BpuMI CCSGG 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 53
BseBI CCWGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 53
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 2 cut(s) 54, 196
BslI CCNNNNNNNGG 1 cut(s) 53
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 106
BspANI GGCC 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 59, 130
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 2 cut(s) 162, 195
BstSFI CTRYAG 2 cut(s) 243, 251
BstV2I GAAGAC 2 cut(s) 85, 225
BsuRI GGCC 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 59, 130
Cfr10I RCCGGY 1 cut(s) 53
CviAII CATG 1 cut(s) 238
CviJI RGCY 7 cut(s) 32, 57, 61, 72, 81, 128, 248
CviKI_1 RGCY 7 cut(s) 32, 57, 61, 72, 81, 128, 248
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 241
FaiI YATR 3 cut(s) 239, 245, 253
FatI CATG 1 cut(s) 237
FspBI CTAG 2 cut(s) 125, 206
HaeIII GGCC 1 cut(s) 57
HapII CCGG 2 cut(s) 54, 196
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 1 cut(s) 241
HinfI GANTC 2 cut(s) 111, 154
HpaII CCGG 2 cut(s) 54, 196
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 6 cut(s) 67, 71, 142, 149, 176, 209
LweI GCATC 1 cut(s) 141
MaeI CTAG 2 cut(s) 125, 206
MaeII ACGT 1 cut(s) 90
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 3 cut(s) 77, 85, 230
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 213
MnlI CCTC 4 cut(s) 26, 43, 79, 180
MroXI GAANNNNTTC 1 cut(s) 9
MspI CCGG 2 cut(s) 54, 196
MspR9I CCNGG 2 cut(s) 164, 197
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 78
NciI CCSGG 1 cut(s) 197
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 241
NspI RCATGY 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 111, 154
PfoI TCCNGGA 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
Sau3AI GATC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 164, 197
SduI GDGCHC 1 cut(s) 237
SetI ASST 5 cut(s) 18, 63, 93, 191, 207
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 2 cut(s) 243, 251
Sse9I AATT 1 cut(s) 213
SspMI CTAG 2 cut(s) 125, 206
StyD4I CCNGG 2 cut(s) 162, 195
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 35, 109
TasI AATT 1 cut(s) 213
TfiI GAWTC 2 cut(s) 111, 154
XceI RCATGY 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 2 cut(s) 125, 206
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.