Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012332

Physical Location & Seq

Genomic Coordinates Forward (+)

8916047 .. 8919146

Gene Structure 3100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGATTTATAGGAGGAAGTTGTGTCCTAGAAATTTTGGTAGACTGTCCAAAAACCCTACCTTAAACCCTGCCTTTCCCAATTTCAATTCATACCCTAATCTCTGCACTAGGGAACTCAATAGTTATGTTGGCAGTTCTAGATTTTGGAGCTCTATATTGGGTTCCAGCTTAATTTCTCCTAAATATTCTGTACCAATAAACCCCAATTTGGTAGGTAGTTCTGGGTTTTCAAGATTGAATTTTTCTGAAAATTCGTTATCTGTTGGGTGTGATTTTGTTAGAAATTACTGTTCTGGGAAGAACAGTGATGAGTGGACTGAGGAGATTGAGTATTTGGATGAATCAGGCAGTGTTATTTACACTGGGAAAGGTATAAGGTCTGTTGAACCGGGGCTCGATGACCATGTAATGGTGGGTGGTTTGAAAAAGCCGCTTCTGAATGCCTCTGTGATTGCTAAGATTGTTGAGGTTGTGAAGAGGTGGAAATGGGGGCCTGAGTTGGAGACCCAATTGGACAAGCTCCAGTTTGTGCCAAACATGATTCACATCACGCAAGCATTGAAGGTGGTTAAAGACGGTGAAGGGGCTCTGAGTTTGTTTCGGTGGGCGAAGAGGCAGCCTTGGTATTTGCCAAGTGATGAGTGTTATGTGTTGTTGTTTGATGGCCTGAATGAAAGTAGGGACTTTGATGGGATTCAATCATTGTTCGATGAAATGGTGCAGGATTCGAGTAATAATGGGGTTTTATCATCTACTGCATATAATCGTGTCATTCAGTTTTTGGCTAAAGCAGATAAAATGGAGGTGGCATTTTGTTGTTTTAAGAAGATTCAAGATTCAGGATGTAAAGTTGATACTCGGACATATAATTCGCTTATACTGCTGTTTTTAAATAAGGGTTTACCTTATAAGGCATTTGAGGTATATGAAAGCATGCAAGCTGCAAACTGTTCTTTGGATGGATCAACCTATGAGTTGATGGTACCAAACTTGGCAAAGTCGGGCCGCCTTGATGCAGCATTTAAGCTCTTCCAAGAAATGAAAGAGAAGAGTGTTAAACCCAGCTTTAATGTCTTTGCATCACTTGTTGATTCAATGGGAAAAGCTGGGAGGTTGGACATGGCAATGAAGGTATACATGGAAATGCAGGGTTATGGTTTCAGGCCATCTGCTCCCATGTTTGTATCCATGATTGAGTCAAATGTAAAGGCTGGGAAGTTGGATGCTGCCCTCAGACTTTGGGATGAGATGAAGAAAGCAGGCTTTAGGCCTAATTTTGGGTTATACACAATGATTGTTGAGTCCCATGCAAAATCAGGAAAACTTGATATTGCCATGTCTACCTTTACGGACATGGAGAAGGTTGGATTTCTACCCACTCCATCTACGTATTCATGTCTGTTGGAAATGCATGCTGCCTCTGGACAAGTAGATCCTGCCATGAAGATCTATAATTCGATGACCAATGCAGGTTTAAGACCAGGTATGAGTACGTACACTGGCCTTCTAATGCTCTTAGCTAATAAGAAGCTTGTGGATGTGGCTGCCAAAATTTTGCTCGAGATGAAGAGCATGGGATATTCTGTTGATGTGAGTGCTAGTGATGTACTGATGGTGTATATCAAGGATGGTTCTGTTGATGTTGCTTTGCGGTGGCTACGTTTCATGGGTTCATCAGGGATTCGAACAAATAATTTTATAATTAGACAGCTGTTTGAGTCATGTATGAAGAGTGGTTTGTTTAAGTCAGCAAAGCCTCTCCTTGAAACTTATGTGAACTCTGCTGCAAAAGTCGACCTGGTACTGTACACATCCATTCTAGCGCATCTTGTAAGATGCCAGGATGAAGAGAATGAGAGGCATTTGATGTCAATACTTAGTACTACAAGACATAAGGCACATGCTTTTATGTGCGGACTCTTCACAGGTCCAGAACAGAGGAAACAACCGGTGTTATCTTTTGTGAGGGAATTTTTCCAAGGTATTGACTATGAGTTGGAAGAGGGGCCTGCTAGGTACTTTGTTAATGTTCTCCTCAATTACCTTGTTCTTATGGGCCAGATAAACCGAGCTCGATGTGTTTGGAAAGTTGCCTATGAGAATAAACTTTTCCCGAAGGCAATTGTTTTTGATCAGCAAATAGCTTGGTCTCTTGATGTCAGAAACTTATCAGTTGGAGCTGCTCTCATATCAGTTGTGCATACTCTCCATAGGTTCCGGAAACGAATGTTGTATTATGGTGTTGTCCCGAGACGTATTAAATTGGTCACTGGACCAACTTTGAAGATTGTGATTGCACAAGTTTTGAACTCTGTGGAATCTCCATTTGAGGTTAGTAAAGTAGTGCTGAGGGCTCCAGGAGATGCTGTCATGGAGTGGTTTAAAAAACCTATTGTTCAACAGTTTCTTCTGAATGAGATTCCATCCAGGTCTGACATCCTCATGCACAAGCTGAACACTCTTTTTCCTAGTTCTGCGCCTGAACTAAGATCTCTGTCCCCTCCCAAAATGCTCATGGGAAGGAAAGGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

845

Amino Acids

94.92

Weight (kDa)

9.17

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	251 - 293	2.3e-08	PPR repeat family
PPR_long	PF17177	254 - 407	8.5e-12	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	256 - 381	4.7e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	285 - 333	3e-07	PPR repeat family
PPR_3	PF13812	378 - 433	1e-05	Pentatricopeptide repeat domain
PPR_long	PF17177	406 - 493	8.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	414 - 470	3.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	429 - 470	3.1e-06	PPR repeat family
TPR_24	PF23276	429 - 537	5.6e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	463 - 504	9.1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79490
fragaria_vesca	FvH4_3g14450 FvH4_3g14450
malus_domestica	MD05G1236700.v1.1
prunus_persica	Prupe.4G129400_v2.0.a1
pyrus_communis	pycom05g21360
rosa_chinensis	RchiOBHm_Chr5g0023761
rosa_laevigata	RLG00000032735
rosa_multiflora	Rmu_sc0001372.1_g000009 Rmu_ssc0000027.1_g000014
rosa_roxburghii	Rroxscaffold_1G00055430
rosa_rugosa	Rorug05G0079500
rosa_samantha	Rh5AG169500 Rh5BG166900 Rh5CG182500 Rh5DG168800
rosa_wichuraiana	Rw0G001560 Rw0G005010 Rw5G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	909, 1700
Acc36I	ACCTGC	1 cut(s)	1460
Acc65I	GGTACC	1 cut(s)	982
AccB1I	GGYRCC	1 cut(s)	982
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccI	GTMKAC	4 cut(s)	40, 1134, 1340, 1794
AccIII	TCCGGA	1 cut(s)	2217
AciI	CCGC	4 cut(s)	431, 1006, 1651, 1914
AclWI	GGATC	2 cut(s)	970, 1427
AcsI	RAATTY	6 cut(s)	31, 238, 250, 1551, 1970, 2529
AfaI	GTAC	9 cut(s)	192, 984, 1492, 1496, 1608, 1803, 1808, 1882, 2018
AfiI	CCNNNNNNNGG	3 cut(s)	208, 409, 1277
AgeI	ACCGGT	1 cut(s)	1948
AjnI	CCWGG	5 cut(s)	1480, 1797, 1839, 2356, 2426
Alw21I	GWGCWC	2 cut(s)	152, 2074
Alw26I	GTCTC	3 cut(s)	497, 2154, 2245
AlwI	GGATC	2 cut(s)	970, 1427
Ama87I	CYCGRG	2 cut(s)	1559, 2248
Aor13HI	TCCGGA	1 cut(s)	2217
AoxI	GGCC	8 cut(s)	491, 664, 1003, 1163, 1268, 1501, 2006, 2056
ApeKI	GCWGC	8 cut(s)	616, 941, 1016, 1226, 1415, 1544, 1784, 2180
ApoI	RAATTY	6 cut(s)	31, 238, 250, 1551, 1970, 2529
ArsI	GACNNNNNNTTYG	2 cut(s)	853, 885
AsiGI	ACCGGT	1 cut(s)	1948
Asp718I	GGTACC	1 cut(s)	982
AspLEI	GCGC	2 cut(s)	1825, 2479
AspS9I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2056, 2273
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	590
AsuII	TTCGAA	1 cut(s)	1684
AvaI	CYCGRG	2 cut(s)	1559, 2248
AvaII	GGWCC	2 cut(s)	1928, 2273
BanI	GGYRCC	1 cut(s)	982
BanII	GRGCYC	5 cut(s)	152, 396, 589, 2074, 2356
Bbv12I	GWGCWC	2 cut(s)	152, 2074
BbvCI	CCTCAGC	1 cut(s)	2348
BbvI	GCAGC	8 cut(s)	628, 928, 1028, 1213, 1402, 1531, 1771, 2167
BccI	CCATC	9 cut(s)	656, 683, 953, 973, 1174, 1390, 1606, 1622, 2431
BciT130I	CCWGG	5 cut(s)	1482, 1799, 1841, 2358, 2428
BciVI	GTATCC	1 cut(s)	1195
BclI	TGATCA	1 cut(s)	2131
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	3 cut(s)	497, 2154, 2245
BfaI	CTAG	7 cut(s)	27, 108, 138, 1599, 1820, 2013, 2469
BfuAI	ACCTGC	1 cut(s)	1460
BfuI	GTATCC	1 cut(s)	1195
BglII	AGATCT	2 cut(s)	1446, 2489
BmcAI	AGTACT	1 cut(s)	1882
Bme1390I	CCNGG	6 cut(s)	390, 1482, 1799, 1841, 2358, 2428
Bme18I	GGWCC	2 cut(s)	1928, 2273
BmeT110I	CYCGRG	2 cut(s)	1559, 2248
BmgT120I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2056, 2273
BmiI	GGNNCC	6 cut(s)	163, 492, 984, 2007, 2216, 2355
BmrFI	CCNGG	6 cut(s)	390, 1482, 1799, 1841, 2358, 2428
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	6 cut(s)	1003, 1088, 1213, 1826, 1834, 2353
BmuI	ACTGGG	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	2169, 2201
BpmI	CTGGAG	2 cut(s)	506, 2340
Bpu10I	CCTNAGC	1 cut(s)	2348
Bpu14I	TTCGAA	1 cut(s)	1684
BpuMI	CCSGG	1 cut(s)	390
BsaAI	YACGTR	2 cut(s)	1389, 1494
BsaBI	GATNNNNATC	1 cut(s)	545
BsaI	GGTCTC	2 cut(s)	497, 2154
BsaJI	CCNNGG	3 cut(s)	389, 620, 1978
BsaWI	WCCGGW	2 cut(s)	1948, 2217
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 2352, 2382
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 409, 1277
Bse118I	RCCGGY	1 cut(s)	1948
Bse1I	ACTGG	4 cut(s)	367, 523, 1504, 2275
Bse3DI	GCAATG	1 cut(s)	1131
Bse8I	GATNNNNATC	1 cut(s)	545
BseAI	TCCGGA	1 cut(s)	2217
BseBI	CCWGG	5 cut(s)	1482, 1799, 1841, 2358, 2428
BseDI	CCNNGG	3 cut(s)	389, 620, 1978
BseJI	GATNNNNATC	1 cut(s)	545
BseLI	CCNNNNNNNGG	3 cut(s)	208, 409, 1277
BseMI	GCAATG	1 cut(s)	1131
BseMII	CTCAG	5 cut(s)	309, 486, 581, 1246, 2339
BseNI	ACTGG	4 cut(s)	367, 523, 1504, 2275
BseRI	GAGGAG	2 cut(s)	335, 2024
BseXI	GCAGC	8 cut(s)	628, 928, 1028, 1213, 1402, 1531, 1771, 2167
BseYI	CCCAGC	3 cut(s)	1061, 1106, 1211
BsgI	GTGCAG	2 cut(s)	88, 740
BshFI	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 2008, 2058
BshNI	GGYRCC	1 cut(s)	982
BshTI	ACCGGT	1 cut(s)	1948
BsiHKAI	GWGCWC	2 cut(s)	152, 2074
BsiHKCI	CYCGRG	2 cut(s)	1559, 2248
BsiSI	CCGG	3 cut(s)	389, 1949, 2218
BslFI	GGGAC	4 cut(s)	695, 1288, 2231, 2482
BslI	CCNNNNNNNGG	3 cut(s)	208, 409, 1277
BsmAI	GTCTC	3 cut(s)	497, 2154, 2245
BsmBI	CGTCTC	1 cut(s)	2245
BsmFI	GGGAC	4 cut(s)	695, 1288, 2231, 2482
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 2008, 2058
Bso31I	GGTCTC	2 cut(s)	497, 2154
BsoBI	CYCGRG	2 cut(s)	1559, 2248
Bsp119I	TTCGAA	1 cut(s)	1684
Bsp1286I	GDGCHC	5 cut(s)	152, 396, 589, 2074, 2356
Bsp13I	TCCGGA	1 cut(s)	2217
Bsp1407I	TGTACA	1 cut(s)	1806
Bsp143I	GATC	5 cut(s)	962, 1432, 1446, 2131, 2489
BspACI	CCGC	4 cut(s)	431, 1006, 1651, 1914
BspANI	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 2008, 2058
BspCNI	CTCAG	5 cut(s)	310, 487, 582, 1245, 2340
BspEI	TCCGGA	1 cut(s)	2217
BspLI	GGNNCC	6 cut(s)	163, 492, 984, 2007, 2216, 2355
BspMI	ACCTGC	1 cut(s)	1460
BspPI	GGATC	2 cut(s)	970, 1427
BspQI	GCTCTTC	2 cut(s)	1034, 1562
BspT104I	TTCGAA	1 cut(s)	1684
BspT107I	GGYRCC	1 cut(s)	982
BspTNI	GGTCTC	2 cut(s)	497, 2154
BsrDI	GCAATG	1 cut(s)	1131
BsrFI	RCCGGY	1 cut(s)	1948
BsrGI	TGTACA	1 cut(s)	1806
BsrI	ACTGG	4 cut(s)	367, 523, 1504, 2275
BssAI	RCCGGY	1 cut(s)	1948
BssECI	CCNNGG	3 cut(s)	389, 620, 1978
BssMI	GATC	5 cut(s)	962, 1432, 1446, 2131, 2489
BssNAI	GTATAC	1 cut(s)	1135
BssT1I	CCWWGG	2 cut(s)	620, 1978
Bst1107I	GTATAC	1 cut(s)	1135
Bst2UI	CCWGG	5 cut(s)	1482, 1799, 1841, 2358, 2428
Bst4CI	ACNGT	7 cut(s)	45, 290, 305, 578, 950, 1806, 2403
Bst6I	CTCTTC	9 cut(s)	470, 605, 1034, 1043, 1562, 1724, 1842, 1925, 1995
BstAUI	TGTACA	1 cut(s)	1806
BstBAI	YACGTR	2 cut(s)	1389, 1494
BstBI	TTCGAA	1 cut(s)	1684
BstC8I	GCNNGC	6 cut(s)	555, 935, 939, 1261, 1413, 2010
BstDEI	CTNAG	9 cut(s)	318, 456, 495, 590, 1232, 1516, 1877, 2348, 2486
BstHHI	GCGC	2 cut(s)	1825, 2479
BstKTI	GATC	5 cut(s)	965, 1435, 1449, 2134, 2492
BstMAI	GTCTC	3 cut(s)	497, 2154, 2245
BstMBI	GATC	5 cut(s)	962, 1432, 1446, 2131, 2489
BstMWI	GCNNNNNNNGC	1 cut(s)	880
BstNI	CCWGG	5 cut(s)	1482, 1799, 1841, 2358, 2428
BstNSI	RCATGY	3 cut(s)	937, 1415, 1904
BstSCI	CCNGG	6 cut(s)	388, 1480, 1797, 1839, 2356, 2426
BstSNI	TACGTA	2 cut(s)	1389, 1494
BstV1I	GCAGC	8 cut(s)	628, 928, 1028, 1213, 1402, 1531, 1771, 2167
BstX2I	RGATCY	3 cut(s)	1432, 1446, 2489
BstYI	RGATCY	3 cut(s)	1432, 1446, 2489
BstZ17I	GTATAC	1 cut(s)	1135
BsuI	GTATCC	1 cut(s)	1195
BsuRI	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 2008, 2058
BtsI	GCAGTG	1 cut(s)	355
BtsIMutI	CAGTG	5 cut(s)	310, 355, 360, 1497, 2268
BveI	ACCTGC	1 cut(s)	1460
Cac8I	GCNNGC	6 cut(s)	555, 935, 939, 1261, 1413, 2010
CfoI	GCGC	2 cut(s)	1825, 2479
Cfr10I	RCCGGY	1 cut(s)	1948
Cfr13I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2056, 2273
CsiI	ACCWGGT	2 cut(s)	1480, 1797
Csp6I	GTAC	9 cut(s)	191, 983, 1491, 1495, 1607, 1802, 1807, 1881, 2017
CspAI	ACCGGT	1 cut(s)	1948
CviQI	GTAC	9 cut(s)	191, 983, 1491, 1495, 1607, 1802, 1807, 1881, 2017
DdeI	CTNAG	9 cut(s)	318, 456, 495, 590, 1232, 1516, 1877, 2348, 2486
DpnI	GATC	5 cut(s)	964, 1434, 1448, 2133, 2491
DpnII	GATC	5 cut(s)	962, 1432, 1446, 2131, 2489
DraI	TTTAAA	2 cut(s)	891, 2383
Eam1104I	CTCTTC	9 cut(s)	470, 605, 1034, 1043, 1562, 1724, 1842, 1925, 1995
EarI	CTCTTC	9 cut(s)	470, 605, 1034, 1043, 1562, 1724, 1842, 1925, 1995
Ecl136II	GAGCTC	2 cut(s)	150, 2072
Eco105I	TACGTA	2 cut(s)	1389, 1494
Eco130I	CCWWGG	2 cut(s)	620, 1978
Eco147I	AGGCCT	1 cut(s)	1270
Eco24I	GRGCYC	5 cut(s)	152, 396, 589, 2074, 2356
Eco31I	GGTCTC	2 cut(s)	497, 2154
Eco47I	GGWCC	2 cut(s)	1928, 2273
Eco53kI	GAGCTC	2 cut(s)	150, 2072
Eco88I	CYCGRG	2 cut(s)	1559, 2248
EcoICRI	GAGCTC	2 cut(s)	150, 2072
EcoO109I	RGGNCCY	2 cut(s)	491, 2006
EcoRII	CCWGG	5 cut(s)	1480, 1797, 1839, 2356, 2426
EcoT14I	CCWWGG	2 cut(s)	620, 1978
EcoT22I	ATGCAT	1 cut(s)	1413
EcoT38I	GRGCYC	5 cut(s)	152, 396, 589, 2074, 2356
ErhI	CCWWGG	2 cut(s)	620, 1978
Esp3I	CGTCTC	1 cut(s)	2245
FaqI	GGGAC	4 cut(s)	695, 1288, 2231, 2482
FbaI	TGATCA	1 cut(s)	2131
FblI	GTMKAC	4 cut(s)	40, 1134, 1340, 1794
FriOI	GRGCYC	5 cut(s)	152, 396, 589, 2074, 2356
FspBI	CTAG	7 cut(s)	27, 108, 138, 1599, 1820, 2013, 2469
GlaI	GCGC	2 cut(s)	1824, 2478
GsaI	CCCAGC	3 cut(s)	1065, 1110, 1215
GsuI	CTGGAG	2 cut(s)	506, 2340
HaeIII	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 2008, 2058
HapII	CCGG	3 cut(s)	389, 1949, 2218
HhaI	GCGC	2 cut(s)	1825, 2479
Hin6I	GCGC	2 cut(s)	1823, 2477
HinP1I	GCGC	2 cut(s)	1823, 2477
HincII	GTYRAC	1 cut(s)	1795
HindII	GTYRAC	1 cut(s)	1795
HindIII	AAGCTT	1 cut(s)	1529
HpaII	CCGG	3 cut(s)	389, 1949, 2218
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	9 cut(s)	41, 315, 902, 1135, 1341, 1497, 1777, 1795, 1809
Hpy188I	TCNGA	8 cut(s)	247, 438, 591, 861, 1235, 2162, 2412, 2434
Hpy8I	GTNNAC	9 cut(s)	41, 315, 902, 1135, 1341, 1497, 1777, 1795, 1809
HpyAV	CCTTC	7 cut(s)	556, 575, 1123, 1354, 1514, 2110, 2514
HpyCH4III	ACNGT	7 cut(s)	45, 290, 305, 578, 950, 1806, 2403
HpyCH4IV	ACGT	4 cut(s)	1388, 1493, 1660, 2254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	880
HpyF3I	CTNAG	9 cut(s)	318, 456, 495, 590, 1232, 1516, 1877, 2348, 2486
HpySE526I	ACGT	4 cut(s)	1388, 1493, 1660, 2254
HspAI	GCGC	2 cut(s)	1823, 2477
Kpn2I	TCCGGA	1 cut(s)	2217
KpnI	GGTACC	1 cut(s)	986
Ksp22I	TGATCA	1 cut(s)	2131
Kzo9I	GATC	5 cut(s)	962, 1432, 1446, 2131, 2489
LguI	GCTCTTC	2 cut(s)	1034, 1562
LmnI	GCTCC	5 cut(s)	147, 525, 1177, 2177, 2359
Lsp1109I	GCAGC	8 cut(s)	628, 928, 1028, 1213, 1402, 1531, 1771, 2167
LweI	GCATC	6 cut(s)	1003, 1088, 1213, 1826, 1834, 2353
MabI	ACCWGGT	2 cut(s)	1480, 1797
MaeI	CTAG	7 cut(s)	27, 108, 138, 1599, 1820, 2013, 2469
MaeII	ACGT	4 cut(s)	1388, 1493, 1660, 2254
MaeIII	GTNAC	1 cut(s)	2266
MalI	GATC	5 cut(s)	964, 1434, 1448, 2133, 2491
MboI	GATC	5 cut(s)	962, 1432, 1446, 2131, 2489
MfeI	CAATTG	2 cut(s)	509, 2121
MflI	RGATCY	3 cut(s)	1432, 1446, 2489
MhlI	GDGCHC	5 cut(s)	152, 396, 589, 2074, 2356
MlyI	GAGTC	4 cut(s)	1205, 1310, 1727, 1911
MmeI	TCCRAC	7 cut(s)	480, 1095, 1200, 1345, 1383, 1977, 2155
Mph1103I	ATGCAT	1 cut(s)	1413
MroI	TCCGGA	1 cut(s)	2217
MslI	CAYNNNNRTG	3 cut(s)	1124, 1142, 2441
MspA1I	CMGCKG	1 cut(s)	1711
MspI	CCGG	3 cut(s)	389, 1949, 2218
MspR9I	CCNGG	6 cut(s)	390, 1482, 1799, 1841, 2358, 2428
MunI	CAATTG	2 cut(s)	509, 2121
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	5 cut(s)	1482, 1799, 1841, 2358, 2428
MwoI	GCNNNNNNNGC	1 cut(s)	880
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	5 cut(s)	962, 1432, 1446, 2131, 2489
NlaIV	GGNNCC	6 cut(s)	163, 492, 984, 2007, 2216, 2355
NmuCI	GTSAC	1 cut(s)	2266
NsiI	ATGCAT	1 cut(s)	1413
NspI	RCATGY	3 cut(s)	937, 1415, 1904
NspV	TTCGAA	1 cut(s)	1684
PaeI	GCATGC	2 cut(s)	937, 1415
PaeR7I	CTCGAG	1 cut(s)	1559
PceI	AGGCCT	1 cut(s)	1270
PciSI	GCTCTTC	2 cut(s)	1034, 1562
PctI	GAATGC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	409
PfoI	TCCNGGA	1 cut(s)	2356
PinAI	ACCGGT	1 cut(s)	1948
PleI	GAGTC	4 cut(s)	1204, 1309, 1726, 1911
PpsI	GAGTC	4 cut(s)	1204, 1309, 1726, 1911
Ppu21I	YACGTR	2 cut(s)	1389, 1494
PsiI	TTATAA	2 cut(s)	909, 1700
Psp124BI	GAGCTC	2 cut(s)	152, 2074
Psp6I	CCWGG	5 cut(s)	1480, 1797, 1839, 2356, 2426
PspFI	CCCAGC	3 cut(s)	1061, 1106, 1211
PspGI	CCWGG	5 cut(s)	1480, 1797, 1839, 2356, 2426
PspN4I	GGNNCC	6 cut(s)	163, 492, 984, 2007, 2216, 2355
PspPI	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2056, 2273
PsuI	RGATCY	3 cut(s)	1432, 1446, 2489
PvuII	CAGCTG	1 cut(s)	1711
RsaI	GTAC	9 cut(s)	192, 984, 1492, 1496, 1608, 1803, 1808, 1882, 2018
RsaNI	GTAC	9 cut(s)	191, 983, 1491, 1495, 1607, 1802, 1807, 1881, 2017
RseI	CAYNNNNRTG	3 cut(s)	1124, 1142, 2441
SacI	GAGCTC	2 cut(s)	152, 2074
SalI	GTCGAC	1 cut(s)	1793
SapI	GCTCTTC	2 cut(s)	1034, 1562
Sau3AI	GATC	5 cut(s)	962, 1432, 1446, 2131, 2489
Sau96I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2056, 2273
ScaI	AGTACT	1 cut(s)	1882
SchI	GAGTC	4 cut(s)	1205, 1310, 1727, 1911
ScrFI	CCNGG	6 cut(s)	390, 1482, 1799, 1841, 2358, 2428
SduI	GDGCHC	5 cut(s)	152, 396, 589, 2074, 2356
SexAI	ACCWGGT	2 cut(s)	1480, 1797
SfaNI	GCATC	6 cut(s)	1003, 1088, 1213, 1826, 1834, 2353
Sfr274I	CTCGAG	1 cut(s)	1559
SfuI	TTCGAA	1 cut(s)	1684
SinI	GGWCC	2 cut(s)	1928, 2273
SlaI	CTCGAG	1 cut(s)	1559
SmiMI	CAYNNNNRTG	3 cut(s)	1124, 1142, 2441
SmlI	CTYRAG	1 cut(s)	1559
SmoI	CTYRAG	1 cut(s)	1559
SnaBI	TACGTA	2 cut(s)	1389, 1494
SphI	GCATGC	2 cut(s)	937, 1415
SseBI	AGGCCT	1 cut(s)	1270
SsiI	CCGC	4 cut(s)	431, 1006, 1651, 1914
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	7 cut(s)	27, 108, 138, 1599, 1820, 2013, 2469
SstI	GAGCTC	2 cut(s)	152, 2074
StuI	AGGCCT	1 cut(s)	1270
StyD4I	CCNGG	6 cut(s)	388, 1480, 1797, 1839, 2356, 2426
StyI	CCWWGG	2 cut(s)	620, 1978
TaaI	ACNGT	7 cut(s)	45, 290, 305, 578, 950, 1806, 2403
TaiI	ACGT	4 cut(s)	1391, 1496, 1663, 2257
TaqI	TCGA	8 cut(s)	396, 708, 728, 1457, 1560, 1684, 1794, 2074
TatI	WGTACW	3 cut(s)	1606, 1806, 1880
TauI	GCSGC	2 cut(s)	433, 1008
TscAI	CASTG	5 cut(s)	310, 355, 367, 1504, 2275
TseFI	GTSAC	1 cut(s)	2266
TseI	GCWGC	8 cut(s)	616, 941, 1016, 1226, 1415, 1544, 1784, 2180
Tsp45I	GTSAC	1 cut(s)	2266
TspGWI	ACGGA	1 cut(s)	1364
TspRI	CASTG	5 cut(s)	310, 355, 367, 1504, 2275
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	1928, 2273
XapI	RAATTY	6 cut(s)	31, 238, 250, 1551, 1970, 2529
XbaI	TCTAGA	1 cut(s)	137
XceI	RCATGY	3 cut(s)	937, 1415, 1904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2512
XhoI	CTCGAG	1 cut(s)	1559
XmiI	GTMKAC	4 cut(s)	40, 1134, 1340, 1794
XspI	CTAG	7 cut(s)	27, 108, 138, 1599, 1820, 2013, 2469
ZrmI	AGTACT	1 cut(s)	1882
Zsp2I	ATGCAT	1 cut(s)	1413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.