Pentatricopeptide repeat-containing protein At1g79490
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G79490 |
| fragaria_vesca | FvH4_3g14450 FvH4_3g14450 |
| malus_domestica | MD05G1236700.v1.1 |
| prunus_persica | Prupe.4G129400_v2.0.a1 |
| pyrus_communis | pycom05g21360 |
| rosa_chinensis | RchiOBHm_Chr5g0023761 |
| rosa_laevigata | RLG00000032735 |
| rosa_multiflora | Rmu_sc0001372.1_g000009 Rmu_ssc0000027.1_g000014 |
| rosa_roxburghii | Rroxscaffold_1G00055430 |
| rosa_rugosa | Rorug05G0079500 |
| rosa_samantha | Rh5AG169500 Rh5BG166900 Rh5CG182500 Rh5DG168800 |
| rosa_wichuraiana | Rw0G001560 Rw0G005010 Rw5G015330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 875, 906, 1697 |
| Acc36I | ACCTGC | 2 cut(s) | 1247, 1457 |
| Acc65I | GGTACC | 1 cut(s) | 979 |
| AccB1I | GGYRCC | 2 cut(s) | 979, 1877 |
| AccI | GTMKAC | 5 cut(s) | 40, 370, 1131, 1337, 1791 |
| AciI | CCGC | 3 cut(s) | 1003, 1434, 1648 |
| AclWI | GGATC | 2 cut(s) | 967, 1084 |
| AcsI | RAATTY | 6 cut(s) | 31, 235, 690, 1048, 1548, 1967 |
| AcuI | CTGAAG | 1 cut(s) | 46 |
| AfaI | GTAC | 5 cut(s) | 103, 189, 528, 981, 1489 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 676, 1274, 1440, 1650 |
| AflIII | ACRYGT | 1 cut(s) | 1116 |
| AjnI | CCWGG | 6 cut(s) | 265, 385, 1477, 1836, 2148, 2246 |
| Alw21I | GWGCWC | 4 cut(s) | 149, 218, 2071, 2309 |
| Alw26I | GTCTC | 2 cut(s) | 494, 2352 |
| AlwI | GGATC | 2 cut(s) | 967, 1084 |
| Ama87I | CYCGRG | 1 cut(s) | 1417 |
| ApaI | GGGCCC | 1 cut(s) | 1928 |
| ApeKI | GCWGC | 9 cut(s) | 613, 938, 1013, 1223, 1412, 1541, 1778, 1781, 2177 |
| ApoI | RAATTY | 6 cut(s) | 31, 235, 690, 1048, 1548, 1967 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 850, 882 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 20, 1971 |
| Asp718I | GGTACC | 1 cut(s) | 979 |
| AsuC2I | CCSGG | 1 cut(s) | 2355 |
| AsuHPI | GGTGA | 3 cut(s) | 37, 425, 587 |
| AvaI | CYCGRG | 1 cut(s) | 1417 |
| AvaII | GGWCC | 3 cut(s) | 375, 2145, 2270 |
| AxyI | CCTNAGG | 2 cut(s) | 1229, 1672 |
| BaeGI | GKGCMC | 1 cut(s) | 1928 |
| BanI | GGYRCC | 2 cut(s) | 979, 1877 |
| BanII | GRGCYC | 7 cut(s) | 149, 218, 393, 1928, 2071, 2309, 2353 |
| BbsI | GAAGAC | 1 cut(s) | 1571 |
| Bbv12I | GWGCWC | 4 cut(s) | 149, 218, 2071, 2309 |
| BbvCI | CCTCAGC | 1 cut(s) | 2345 |
| BbvI | GCAGC | 9 cut(s) | 625, 925, 1000, 1210, 1399, 1528, 1765, 1768, 2164 |
| BceAI | ACGGC | 2 cut(s) | 412, 2174 |
| BciT130I | CCWGG | 6 cut(s) | 267, 387, 1479, 1838, 2150, 2248 |
| BclI | TGATCA | 3 cut(s) | 397, 1458, 2128 |
| BcnI | CCSGG | 1 cut(s) | 2355 |
| BcoDI | GTCTC | 2 cut(s) | 494, 2352 |
| BfaI | CTAG | 5 cut(s) | 750, 1596, 1760, 2010, 2466 |
| BfuAI | ACCTGC | 2 cut(s) | 1247, 1457 |
| BglII | AGATCT | 1 cut(s) | 2486 |
| BmcAI | AGTACT | 1 cut(s) | 1489 |
| Bme1390I | CCNGG | 7 cut(s) | 267, 387, 1479, 1838, 2150, 2248, 2355 |
| Bme18I | GGWCC | 3 cut(s) | 375, 2145, 2270 |
| BmeT110I | CYCGRG | 1 cut(s) | 1417 |
| BmrFI | CCNGG | 7 cut(s) | 267, 387, 1479, 1838, 2150, 2248, 2355 |
| BmsI | GCATC | 4 cut(s) | 1000, 1210, 1497, 1823 |
| BpiI | GAAGAC | 1 cut(s) | 1571 |
| BpmI | CTGGAG | 1 cut(s) | 503 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2345 |
| BpuEI | CTTGAG | 1 cut(s) | 1577 |
| BpuMI | CCSGG | 1 cut(s) | 2355 |
| BsaI | GGTCTC | 1 cut(s) | 494 |
| BsaJI | CCNNGG | 7 cut(s) | 265, 386, 617, 1416, 1569, 2148, 2246 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 85, 115, 791, 821, 2349, 2379 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 676, 1274, 1440, 1650 |
| Bse1I | ACTGG | 3 cut(s) | 364, 520, 1946 |
| Bse21I | CCTNAGG | 2 cut(s) | 1229, 1672 |
| Bse3DI | GCAATG | 1 cut(s) | 1338 |
| BseBI | CCWGG | 6 cut(s) | 267, 387, 1479, 1838, 2150, 2248 |
| BseDI | CCNNGG | 7 cut(s) | 265, 386, 617, 1416, 1569, 2148, 2246 |
| BseGI | GGATG | 6 cut(s) | 340, 961, 1246, 1630, 1808, 2433 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 676, 1274, 1440, 1650 |
| BseMI | GCAATG | 1 cut(s) | 1338 |
| BseMII | CTCAG | 6 cut(s) | 306, 563, 869, 1686, 2322, 2336 |
| BseNI | ACTGG | 3 cut(s) | 364, 520, 1946 |
| BseRI | GAGGAG | 2 cut(s) | 226, 2021 |
| BseSI | GKGCMC | 1 cut(s) | 1928 |
| BseXI | GCAGC | 9 cut(s) | 625, 925, 1000, 1210, 1399, 1528, 1765, 1768, 2164 |
| BseYI | CCCAGC | 2 cut(s) | 1058, 1208 |
| BsgI | GTGCAG | 3 cut(s) | 737, 2163, 2457 |
| BshNI | GGYRCC | 2 cut(s) | 979, 1877 |
| BsiHKAI | GWGCWC | 4 cut(s) | 149, 218, 2071, 2309 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1417 |
| BsiSI | CCGG | 1 cut(s) | 2354 |
| BslFI | GGGAC | 5 cut(s) | 1285, 1434, 2131, 2228, 2283 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 676, 1274, 1440, 1650 |
| BsmAI | GTCTC | 2 cut(s) | 494, 2352 |
| BsmBI | CGTCTC | 1 cut(s) | 2352 |
| BsmFI | GGGAC | 5 cut(s) | 1285, 1434, 2131, 2228, 2283 |
| BsmI | GAATGC | 2 cut(s) | 442, 1780 |
| Bso31I | GGTCTC | 1 cut(s) | 494 |
| BsoBI | CYCGRG | 1 cut(s) | 1417 |
| Bsp120I | GGGCCC | 1 cut(s) | 1924 |
| Bsp1286I | GDGCHC | 7 cut(s) | 149, 218, 393, 1928, 2071, 2309, 2353 |
| Bsp1407I | TGTACA | 1 cut(s) | 101 |
| Bsp143I | GATC | 7 cut(s) | 397, 959, 1076, 1458, 1636, 2128, 2486 |
| Bsp19I | CCATGG | 1 cut(s) | 1569 |
| BspACI | CCGC | 3 cut(s) | 1003, 1434, 1648 |
| BspCNI | CTCAG | 6 cut(s) | 307, 562, 868, 1685, 2321, 2337 |
| BspMI | ACCTGC | 2 cut(s) | 1247, 1457 |
| BspPI | GGATC | 2 cut(s) | 967, 1084 |
| BspQI | GCTCTTC | 1 cut(s) | 1031 |
| BspT107I | GGYRCC | 2 cut(s) | 979, 1877 |
| BspTNI | GGTCTC | 1 cut(s) | 494 |
| BsrDI | GCAATG | 1 cut(s) | 1338 |
| BsrGI | TGTACA | 1 cut(s) | 101 |
| BsrI | ACTGG | 3 cut(s) | 364, 520, 1946 |
| BssECI | CCNNGG | 7 cut(s) | 265, 386, 617, 1416, 1569, 2148, 2246 |
| BssMI | GATC | 7 cut(s) | 397, 959, 1076, 1458, 1636, 2128, 2486 |
| BssNAI | GTATAC | 2 cut(s) | 371, 1132 |
| BssT1I | CCWWGG | 2 cut(s) | 617, 1569 |
| Bst1107I | GTATAC | 2 cut(s) | 371, 1132 |
| Bst2UI | CCWGG | 6 cut(s) | 267, 387, 1479, 1838, 2150, 2248 |
| Bst4CI | ACNGT | 6 cut(s) | 302, 375, 764, 947, 1707, 2400 |
| Bst6I | CTCTTC | 7 cut(s) | 292, 467, 1031, 1721, 1839, 1922, 1992 |
| BstAUI | TGTACA | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 5 cut(s) | 932, 936, 1105, 1410, 2007 |
| BstDSI | CCRYGG | 1 cut(s) | 1569 |
| BstF5I | GGATG | 6 cut(s) | 340, 961, 1246, 1630, 1808, 2433 |
| BstKTI | GATC | 7 cut(s) | 400, 962, 1079, 1461, 1639, 2131, 2489 |
| BstMAI | GTCTC | 2 cut(s) | 494, 2352 |
| BstMBI | GATC | 7 cut(s) | 397, 959, 1076, 1458, 1636, 2128, 2486 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2186, 2522 |
| BstNI | CCWGG | 6 cut(s) | 267, 387, 1479, 1838, 2150, 2248 |
| BstNSI | RCATGY | 3 cut(s) | 934, 1120, 1412 |
| BstSCI | CCNGG | 7 cut(s) | 265, 385, 1477, 1836, 2148, 2246, 2353 |
| BstSLI | GKGCMC | 1 cut(s) | 1928 |
| BstV1I | GCAGC | 9 cut(s) | 625, 925, 1000, 1210, 1399, 1528, 1765, 1768, 2164 |
| BstV2I | GAAGAC | 1 cut(s) | 1571 |
| BstX2I | RGATCY | 1 cut(s) | 2486 |
| BstYI | RGATCY | 1 cut(s) | 2486 |
| BstZ17I | GTATAC | 2 cut(s) | 371, 1132 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1229, 1672 |
| BtgI | CCRYGG | 1 cut(s) | 1569 |
| BtsCI | GGATG | 6 cut(s) | 340, 961, 1246, 1630, 1808, 2433 |
| BtsI | GCAGTG | 1 cut(s) | 352 |
| BtsIMutI | CAGTG | 4 cut(s) | 307, 352, 357, 2316 |
| BveI | ACCTGC | 2 cut(s) | 1247, 1457 |
| Cac8I | GCNNGC | 5 cut(s) | 932, 936, 1105, 1410, 2007 |
| CpoI | CGGWCCG | 1 cut(s) | 375 |
| CseI | GACGC | 1 cut(s) | 2369 |
| CsiI | ACCWGGT | 1 cut(s) | 1477 |
| Csp6I | GTAC | 5 cut(s) | 102, 188, 527, 980, 1488 |
| CspI | CGGWCCG | 1 cut(s) | 375 |
| CviQI | GTAC | 5 cut(s) | 102, 188, 527, 980, 1488 |
| DpnI | GATC | 7 cut(s) | 399, 961, 1078, 1460, 1638, 2130, 2488 |
| DpnII | GATC | 7 cut(s) | 397, 959, 1076, 1458, 1636, 2128, 2486 |
| DraI | TTTAAA | 1 cut(s) | 1054 |
| Eam1104I | CTCTTC | 7 cut(s) | 292, 467, 1031, 1721, 1839, 1922, 1992 |
| EarI | CTCTTC | 7 cut(s) | 292, 467, 1031, 1721, 1839, 1922, 1992 |
| Ecl136II | GAGCTC | 4 cut(s) | 147, 216, 2069, 2307 |
| Eco130I | CCWWGG | 2 cut(s) | 617, 1569 |
| Eco147I | AGGCCT | 2 cut(s) | 554, 1267 |
| Eco24I | GRGCYC | 7 cut(s) | 149, 218, 393, 1928, 2071, 2309, 2353 |
| Eco31I | GGTCTC | 1 cut(s) | 494 |
| Eco47I | GGWCC | 3 cut(s) | 375, 2145, 2270 |
| Eco53kI | GAGCTC | 4 cut(s) | 147, 216, 2069, 2307 |
| Eco57I | CTGAAG | 1 cut(s) | 46 |
| Eco81I | CCTNAGG | 2 cut(s) | 1229, 1672 |
| Eco88I | CYCGRG | 1 cut(s) | 1417 |
| EcoICRI | GAGCTC | 4 cut(s) | 147, 216, 2069, 2307 |
| EcoO109I | RGGNCCY | 3 cut(s) | 263, 488, 2003 |
| EcoRI | GAATTC | 1 cut(s) | 690 |
| EcoRII | CCWGG | 6 cut(s) | 265, 385, 1477, 1836, 2148, 2246 |
| EcoT14I | CCWWGG | 2 cut(s) | 617, 1569 |
| EcoT22I | ATGCAT | 1 cut(s) | 1410 |
| EcoT38I | GRGCYC | 7 cut(s) | 149, 218, 393, 1928, 2071, 2309, 2353 |
| ErhI | CCWWGG | 2 cut(s) | 617, 1569 |
| Esp3I | CGTCTC | 1 cut(s) | 2352 |
| FaqI | GGGAC | 5 cut(s) | 1285, 1434, 2131, 2228, 2283 |
| FauNDI | CATATG | 2 cut(s) | 1198, 1768 |
| FbaI | TGATCA | 3 cut(s) | 397, 1458, 2128 |
| FblI | GTMKAC | 5 cut(s) | 40, 370, 1131, 1337, 1791 |
| FokI | GGATG | 6 cut(s) | 347, 968, 1253, 1637, 1795, 2420 |
| FriOI | GRGCYC | 7 cut(s) | 149, 218, 393, 1928, 2071, 2309, 2353 |
| FspBI | CTAG | 5 cut(s) | 750, 1596, 1760, 2010, 2466 |
| GsaI | CCCAGC | 2 cut(s) | 1062, 1212 |
| GsuI | CTGGAG | 1 cut(s) | 503 |
| HapII | CCGG | 1 cut(s) | 2354 |
| HgaI | GACGC | 1 cut(s) | 2369 |
| HindIII | AAGCTT | 3 cut(s) | 17, 1526, 2102 |
| HpaII | CCGG | 1 cut(s) | 2354 |
| HphI | GGTGA | 3 cut(s) | 37, 425, 587 |
| Hpy166II | GTNNAC | 8 cut(s) | 41, 312, 371, 899, 1132, 1338, 1792, 1913 |
| Hpy188I | TCNGA | 9 cut(s) | 177, 858, 1160, 1608, 1703, 1832, 2216, 2409, 2431 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 830, 1314, 1419 |
| Hpy8I | GTNNAC | 8 cut(s) | 41, 312, 371, 899, 1132, 1338, 1792, 1913 |
| HpyAV | CCTTC | 4 cut(s) | 70, 553, 1120, 1198 |
| HpyCH4III | ACNGT | 6 cut(s) | 302, 375, 764, 947, 1707, 2400 |
| HpyCH4IV | ACGT | 2 cut(s) | 1657, 2154 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2186, 2522 |
| HpySE526I | ACGT | 2 cut(s) | 1657, 2154 |
| KpnI | GGTACC | 1 cut(s) | 983 |
| Ksp22I | TGATCA | 3 cut(s) | 397, 1458, 2128 |
| Kzo9I | GATC | 7 cut(s) | 397, 959, 1076, 1458, 1636, 2128, 2486 |
| LguI | GCTCTTC | 1 cut(s) | 1031 |
| LmnI | GCTCC | 5 cut(s) | 144, 213, 1174, 2174, 2356 |
| Lsp1109I | GCAGC | 9 cut(s) | 625, 925, 1000, 1210, 1399, 1528, 1765, 1768, 2164 |
| LweI | GCATC | 4 cut(s) | 1000, 1210, 1497, 1823 |
| MabI | ACCWGGT | 1 cut(s) | 1477 |
| MaeI | CTAG | 5 cut(s) | 750, 1596, 1760, 2010, 2466 |
| MaeII | ACGT | 2 cut(s) | 1657, 2154 |
| MaeIII | GTNAC | 1 cut(s) | 2263 |
| MalI | GATC | 7 cut(s) | 399, 961, 1078, 1460, 1638, 2130, 2488 |
| MboI | GATC | 7 cut(s) | 397, 959, 1076, 1458, 1636, 2128, 2486 |
| MfeI | CAATTG | 1 cut(s) | 506 |
| MflI | RGATCY | 1 cut(s) | 2486 |
| MhlI | GDGCHC | 7 cut(s) | 149, 218, 393, 1928, 2071, 2309, 2353 |
| MlyI | GAGTC | 8 cut(s) | 36, 103, 532, 1202, 1307, 1724, 1751, 1908 |
| MmeI | TCCRAC | 3 cut(s) | 1342, 1974, 2152 |
| Mph1103I | ATGCAT | 1 cut(s) | 1410 |
| MroXI | GAANNNNTTC | 2 cut(s) | 20, 1971 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1121, 1139, 1390, 2438 |
| MspI | CCGG | 1 cut(s) | 2354 |
| MspR9I | CCNGG | 7 cut(s) | 267, 387, 1479, 1838, 2150, 2248, 2355 |
| MunI | CAATTG | 1 cut(s) | 506 |
| Mva1269I | GAATGC | 2 cut(s) | 442, 1780 |
| MvaI | CCWGG | 6 cut(s) | 267, 387, 1479, 1838, 2150, 2248 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2186, 2522 |
| NciI | CCSGG | 1 cut(s) | 2355 |
| NcoI | CCATGG | 1 cut(s) | 1569 |
| NdeI | CATATG | 2 cut(s) | 1198, 1768 |
| NdeII | GATC | 7 cut(s) | 397, 959, 1076, 1458, 1636, 2128, 2486 |
| NmuCI | GTSAC | 1 cut(s) | 2263 |
| NsiI | ATGCAT | 1 cut(s) | 1410 |
| NspI | RCATGY | 3 cut(s) | 934, 1120, 1412 |
| PaeI | GCATGC | 2 cut(s) | 934, 1412 |
| PceI | AGGCCT | 2 cut(s) | 554, 1267 |
| PciI | ACATGT | 1 cut(s) | 1116 |
| PciSI | GCTCTTC | 1 cut(s) | 1031 |
| PctI | GAATGC | 2 cut(s) | 442, 1780 |
| PdmI | GAANNNNTTC | 2 cut(s) | 20, 1971 |
| PfeI | GAWTC | 8 cut(s) | 338, 722, 826, 833, 1088, 1430, 2315, 2416 |
| PflFI | GACNNNGTC | 2 cut(s) | 1479, 2363 |
| PfoI | TCCNGGA | 1 cut(s) | 2353 |
| PleI | GAGTC | 8 cut(s) | 36, 102, 532, 1201, 1306, 1723, 1750, 1908 |
| PpsI | GAGTC | 8 cut(s) | 36, 102, 532, 1201, 1306, 1723, 1750, 1908 |
| PscI | ACATGT | 1 cut(s) | 1116 |
| PsiI | TTATAA | 3 cut(s) | 875, 906, 1697 |
| Psp124BI | GAGCTC | 4 cut(s) | 149, 218, 2071, 2309 |
| Psp6I | CCWGG | 6 cut(s) | 265, 385, 1477, 1836, 2148, 2246 |
| PspFI | CCCAGC | 2 cut(s) | 1058, 1208 |
| PspGI | CCWGG | 6 cut(s) | 265, 385, 1477, 1836, 2148, 2246 |
| PspOMI | GGGCCC | 1 cut(s) | 1924 |
| PsuI | RGATCY | 1 cut(s) | 2486 |
| PsyI | GACNNNGTC | 2 cut(s) | 1479, 2363 |
| RsaI | GTAC | 5 cut(s) | 103, 189, 528, 981, 1489 |
| RsaNI | GTAC | 5 cut(s) | 102, 188, 527, 980, 1488 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1121, 1139, 1390, 2438 |
| Rsr2I | CGGWCCG | 1 cut(s) | 375 |
| RsrII | CGGWCCG | 1 cut(s) | 375 |
| SacI | GAGCTC | 4 cut(s) | 149, 218, 2071, 2309 |
| SapI | GCTCTTC | 1 cut(s) | 1031 |
| Sau3AI | GATC | 7 cut(s) | 397, 959, 1076, 1458, 1636, 2128, 2486 |
| ScaI | AGTACT | 1 cut(s) | 1489 |
| SchI | GAGTC | 8 cut(s) | 36, 103, 532, 1202, 1307, 1724, 1751, 1908 |
| ScrFI | CCNGG | 7 cut(s) | 267, 387, 1479, 1838, 2150, 2248, 2355 |
| SduI | GDGCHC | 7 cut(s) | 149, 218, 393, 1928, 2071, 2309, 2353 |
| SexAI | ACCWGGT | 1 cut(s) | 1477 |
| SfaNI | GCATC | 4 cut(s) | 1000, 1210, 1497, 1823 |
| SinI | GGWCC | 3 cut(s) | 375, 2145, 2270 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1121, 1139, 1390, 2438 |
| SmlI | CTYRAG | 1 cut(s) | 1556 |
| SmoI | CTYRAG | 1 cut(s) | 1556 |
| SphI | GCATGC | 2 cut(s) | 934, 1412 |
| SseBI | AGGCCT | 2 cut(s) | 554, 1267 |
| SsiI | CCGC | 3 cut(s) | 1003, 1434, 1648 |
| SspMI | CTAG | 5 cut(s) | 750, 1596, 1760, 2010, 2466 |
| SstI | GAGCTC | 4 cut(s) | 149, 218, 2071, 2309 |
| StuI | AGGCCT | 2 cut(s) | 554, 1267 |
| StyD4I | CCNGG | 7 cut(s) | 265, 385, 1477, 1836, 2148, 2246, 2353 |
| StyI | CCWWGG | 2 cut(s) | 617, 1569 |
| TaaI | ACNGT | 6 cut(s) | 302, 375, 764, 947, 1707, 2400 |
| TaiI | ACGT | 2 cut(s) | 1660, 2157 |
| TaqI | TCGA | 5 cut(s) | 227, 393, 598, 1713, 2071 |
| TaqII | GACCGA | 1 cut(s) | 2287 |
| TatI | WGTACW | 2 cut(s) | 101, 1487 |
| TauI | GCSGC | 1 cut(s) | 1005 |
| TfiI | GAWTC | 8 cut(s) | 338, 722, 826, 833, 1088, 1430, 2315, 2416 |
| TscAI | CASTG | 4 cut(s) | 307, 352, 364, 2316 |
| TseFI | GTSAC | 1 cut(s) | 2263 |
| TseI | GCWGC | 9 cut(s) | 613, 938, 1013, 1223, 1412, 1541, 1778, 1781, 2177 |
| Tsp45I | GTSAC | 1 cut(s) | 2263 |
| TspGWI | ACGGA | 2 cut(s) | 106, 367 |
| TspRI | CASTG | 4 cut(s) | 307, 352, 364, 2316 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1479, 2363 |
| VpaK11BI | GGWCC | 3 cut(s) | 375, 2145, 2270 |
| XapI | RAATTY | 6 cut(s) | 31, 235, 690, 1048, 1548, 1967 |
| XceI | RCATGY | 3 cut(s) | 934, 1120, 1412 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2509 |
| XmiI | GTMKAC | 5 cut(s) | 40, 370, 1131, 1337, 1791 |
| XmnI | GAANNNNTTC | 2 cut(s) | 20, 1971 |
| XspI | CTAG | 5 cut(s) | 750, 1596, 1760, 2010, 2466 |
| ZrmI | AGTACT | 1 cut(s) | 1489 |
| Zsp2I | ATGCAT | 1 cut(s) | 1410 |