Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001372.1

Orthogroup ID

OG0012332

Physical Location & Seq

Genomic Coordinates Reverse (-)

46765 .. 50111

Gene Structure 3347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001372.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

atgatttataggagaaagttgtgtcctagaaattttggcagactctacaaaaaccctgccttaaaccctttatttcacaatttcaattcataccctaatctctgcaccagagaactcaatagttatggaggaagttccagattttggagctctatagtgggttccaacttaatttctcctaaatgttctgtaccattaaaacgcaatttcattggcagctctgggttttcaagattaaatctttctgaaactccattatctgttgggtgtgcttttgttagaaattactcttctgggaagaacagtgatgagtggactgaggaaattgagtatttggatgaatcaggaagtgttatttacactgggaaaggtataaggtctgtcgagccggggctcgatgaccatgtgatggtgggtggtttgaaaaagccgcttctgaacgcctctgcgattgctaagattgttgaggttgtgaagaggtggaaatgggggcctgagttggagacccaattggacaaactccaatttgtgccaaacatgactcacattactcaagcattcaaggtgattaatgatagtgaagggtctttgagtttgtttcgatgggctaagaggcaaccttggtatttgccaagtgatgagtgttatgtcttattgtttgatggcctgaatgaaagtagggactttgatggggttcaatcattatttgatgaaatggtgcaggattcgagtaataatggggttttatcatctactgcatataatcgtgtcattcagtttttggctaaagcggataaaatggaggtgtcattttgttgttttaagaagattcaggattcaggatgcaaagttgatactcagacatataattcactcatactgctgtttttaaataagggtttaccttataaggcatttgagatatatgaaagcatgcaagctgcaaattgttcgttggatggatcaacatatgagttgatggtaccaaacttggcaaagtcgggccgccttgatgcagcatttaagctcttccaagaaatgaaagaaaaaaatgttaaacccagctttaatgtctttgcatcgcttgttgattcaatgggaaaagctgggaggttggacatggcaatgaaggtatacatggaaatgcagggttatggtttcaggccatctgctcctatgtatgtatccatgattgagtcaaatgtgaaggctgggaaattggatgctgcccttagactttgggatgagatgaagaaagcaggctttaggcctaactttggcttatacacaatgattgttgagtcccatgcaaaatccggaaaacttgatattgcaatgtctacctttacggatatggagaaggttggatttctacccactccatcgacatattcatgtctattagaaatgcatgctgcctctggacaagtagatcctgccatgaagctgtataattcgatgaccaatgcaggtttaagaccgggtatgagtacttacactggccttctgatgctcttagctaataagaagcttgtggatgtggctgccaaaattttgcttgagatgaagagcatgggatattctgttgatgtgagtgctagtgatgtgctgatggtgtatatcaaggatggttctgttgatgttgctctgcggtggctacgtttcatgggttcatcagggatccgaacaaataattttataattagacagctgtttgagtcatgtatgaagagtggtttgtatgagtcagcaaagcctctccttgaaacttatgtgaactctgctgcaaaagtcgatctggtactgtacacatccattctagcacatcttgtaagatgccaggaagaagagaatgagaggcatttgatgtcaatacttggtactacaagacacaaggcacatgcttttatgtgcggactcttcacaggcccagaacagagggaacaaccggtgttatcttttgtgagggaatttttccaaggtattgactatgagttggaagaggggcctgctaggtactttgttaacgttctcctcaattaccttgttcttatgggacagataaaccgagctcgatgtgtttggaaagtcgcctatgagaataagcttttcccaaaggcaatagtttttgatcaacaaatagcttggtcccttgacgtcaggaacttatcagttggagctgctctcatatcagttgtgcacactctccataggttccggaaacgaatgttgtattatggtgttgtcccgagacgtattaagttggtcactggaccaactttaaagattgtgattgcacaaattttgagctctgtggaatctccatttgaggttagtaaagtagtgctgagggctccaggagatgctgtcatggagtggtttaaaaaacccatagttcaacagtttcttctgaatgagattccatctagtacggaggatgctcagcttcgtgttgcactggttacaacagcgattgcagttgtgaaacaggccgctgttgcgcaggtcacaacgccgagtgacattgttggtattagtggtgtaccgctccacaattggtgtctcagcctctggattcactggttccatcctcttcttcacctagtgttccaagattctcttctcaaactgttgccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

879

Amino Acids

98.8

Weight (kDa)

8.85

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79490
fragaria_vesca	FvH4_3g14450 FvH4_3g14450
malus_domestica	MD05G1236700.v1.1
prunus_persica	Prupe.4G129400_v2.0.a1
pyrus_communis	pycom05g21360
rosa_chinensis	RchiOBHm_Chr5g0023761
rosa_laevigata	RLG00000032735
rosa_multiflora	Rmu_sc0001372.1_g000009 Rmu_ssc0000027.1_g000014
rosa_roxburghii	Rroxscaffold_1G00055430
rosa_rugosa	Rorug05G0079500
rosa_samantha	Rh5AG169500 Rh5BG166900 Rh5CG182500 Rh5DG168800
rosa_wichuraiana	Rw0G001560 Rw0G005010 Rw5G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	909, 1700
AatII	GACGTC	1 cut(s)	2160
Acc16I	TGCGCA	1 cut(s)	2502
Acc36I	ACCTGC	2 cut(s)	1460, 2494
Acc65I	GGTACC	1 cut(s)	982
AccB1I	GGYRCC	1 cut(s)	982
AccB7I	CCANNNNNTGG	2 cut(s)	144, 409
AccBSI	CCGCTC	1 cut(s)	2548
AccI	GTMKAC	2 cut(s)	1134, 1340
AccIII	TCCGGA	2 cut(s)	1316, 2217
AciI	CCGC	7 cut(s)	431, 791, 1006, 1651, 1914, 2493, 2546
AclI	AACGTT	1 cut(s)	2028
AclWI	GGATC	4 cut(s)	970, 1427, 1675, 1688
AcsI	RAATTY	4 cut(s)	31, 1551, 1970, 2301
AcyI	GRCGYC	1 cut(s)	2157
AdeI	CACNNNGTG	1 cut(s)	2605
AfaI	GTAC	9 cut(s)	192, 984, 1492, 1803, 1808, 1882, 2018, 2431, 2544
AfiI	CCNNNNNNNGG	3 cut(s)	144, 409, 1277
AgeI	ACCGGT	1 cut(s)	1948
AgsI	TTSAA	8 cut(s)	85, 231, 424, 562, 698, 1095, 1766, 2399
AjnI	CCWGG	2 cut(s)	1839, 2356
AjuI	GAANNNNNNNTTGG	2 cut(s)	2604, 2636
Alw21I	GWGCWC	4 cut(s)	152, 2074, 2202, 2312
Alw26I	GTCTC	3 cut(s)	497, 2245, 2567
Alw44I	GTGCAC	1 cut(s)	2198
AlwI	GGATC	4 cut(s)	970, 1427, 1675, 1688
AlwNI	CAGNNNCTG	1 cut(s)	2571
Ama87I	CYCGRG	1 cut(s)	2248
Aor13HI	TCCGGA	2 cut(s)	1316, 2217
AoxI	GGCC	9 cut(s)	491, 664, 1003, 1163, 1268, 1501, 1927, 2006, 2490
ApaLI	GTGCAC	1 cut(s)	2198
ApeKI	GCWGC	8 cut(s)	216, 941, 1016, 1226, 1415, 1544, 1784, 2180
ApoI	RAATTY	4 cut(s)	31, 1551, 1970, 2301
AseI	ATTAAT	1 cut(s)	570
AsiGI	ACCGGT	1 cut(s)	1948
Asp718I	GGTACC	1 cut(s)	982
AspLEI	GCGC	1 cut(s)	2503
AspS9I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
AsuC2I	CCSGG	2 cut(s)	390, 1482
AsuHPI	GGTGA	2 cut(s)	577, 2591
AvaI	CYCGRG	1 cut(s)	2248
AvaII	GGWCC	2 cut(s)	2148, 2273
BaeGI	GKGCMC	1 cut(s)	2202
BamHI	GGATCC	1 cut(s)	1680
BanI	GGYRCC	1 cut(s)	982
BanII	GRGCYC	5 cut(s)	152, 396, 2074, 2312, 2356
Bbv12I	GWGCWC	4 cut(s)	152, 2074, 2202, 2312
BbvCI	CCTCAGC	1 cut(s)	2348
BbvI	GCAGC	8 cut(s)	228, 928, 1028, 1213, 1402, 1531, 1771, 2167
BcgI	CGANNNNNNTGC	2 cut(s)	933, 967
BciT130I	CCWGG	2 cut(s)	1841, 2358
BciVI	GTATCC	1 cut(s)	1195
BclI	TGATCA	1 cut(s)	2131
BcnI	CCSGG	2 cut(s)	390, 1482
BcoDI	GTCTC	3 cut(s)	497, 2245, 2567
BfaI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2427, 2603, 2638
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	2 cut(s)	1460, 2494
BfuI	GTATCC	1 cut(s)	1195
BlpI	GCTNAGC	1 cut(s)	2442
BmcAI	AGTACT	1 cut(s)	1492
Bme1390I	CCNGG	4 cut(s)	390, 1482, 1841, 2358
Bme18I	GGWCC	2 cut(s)	2148, 2273
BmeT110I	CYCGRG	1 cut(s)	2248
BmgT120I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
BmiI	GGNNCC	9 cut(s)	163, 492, 984, 1682, 2007, 2150, 2216, 2355, 2585
BmrFI	CCNGG	4 cut(s)	390, 1482, 1841, 2358
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	8 cut(s)	833, 1003, 1088, 1213, 1500, 1826, 2353, 2428
BmuI	ACTGGG	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	2169, 2201
BpmI	CTGGAG	1 cut(s)	2340
Bpu10I	CCTNAGC	1 cut(s)	2348
Bpu1102I	GCTNAGC	1 cut(s)	2442
BpuEI	CTTGAG	2 cut(s)	537, 1580
BpuMI	CCSGG	2 cut(s)	390, 1482
BsaHI	GRCGYC	1 cut(s)	2157
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	389, 620, 1978
BsaWI	WCCGGW	3 cut(s)	1316, 1948, 2217
BsaXI	ACNNNNNCTCC	2 cut(s)	2352, 2382
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 409, 1277
Bse118I	RCCGGY	1 cut(s)	1948
Bse1I	ACTGG	5 cut(s)	367, 1504, 2275, 2463, 2585
Bse3DI	GCAATG	2 cut(s)	1131, 1341
BseAI	TCCGGA	2 cut(s)	1316, 2217
BseBI	CCWGG	2 cut(s)	1841, 2358
BseDI	CCNNGG	3 cut(s)	389, 620, 1978
BseLI	CCNNNNNNNGG	3 cut(s)	144, 409, 1277
BseMI	GCAATG	2 cut(s)	1131, 1341
BseMII	CTCAG	6 cut(s)	309, 486, 872, 2339, 2456, 2578
BseNI	ACTGG	5 cut(s)	367, 1504, 2275, 2463, 2585
BseRI	GAGGAG	1 cut(s)	2024
BseSI	GKGCMC	1 cut(s)	2202
BseXI	GCAGC	8 cut(s)	228, 928, 1028, 1213, 1402, 1531, 1771, 2167
BseYI	CCCAGC	3 cut(s)	1061, 1106, 1211
BsgI	GTGCAG	2 cut(s)	88, 740
BshFI	GGCC	9 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008, 2492
BshNI	GGYRCC	1 cut(s)	982
BshTI	ACCGGT	1 cut(s)	1948
BsiHKAI	GWGCWC	4 cut(s)	152, 2074, 2202, 2312
BsiHKCI	CYCGRG	1 cut(s)	2248
BsiSI	CCGG	5 cut(s)	389, 1317, 1481, 1949, 2218
BslFI	GGGAC	5 cut(s)	695, 1288, 2070, 2134, 2231
BslI	CCNNNNNNNGG	3 cut(s)	144, 409, 1277
BsmAI	GTCTC	3 cut(s)	497, 2245, 2567
BsmBI	CGTCTC	1 cut(s)	2245
BsmFI	GGGAC	5 cut(s)	695, 1288, 2070, 2134, 2231
BsmI	GAATGC	1 cut(s)	557
BsnI	GGCC	9 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008, 2492
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	2248
Bsp1286I	GDGCHC	6 cut(s)	152, 396, 2074, 2202, 2312, 2356
Bsp13I	TCCGGA	2 cut(s)	1316, 2217
Bsp1407I	TGTACA	1 cut(s)	1806
Bsp143I	GATC	5 cut(s)	962, 1432, 1680, 1795, 2131
Bsp1720I	GCTNAGC	1 cut(s)	2442
BspACI	CCGC	7 cut(s)	431, 791, 1006, 1651, 1914, 2493, 2546
BspANI	GGCC	9 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008, 2492
BspCNI	CTCAG	6 cut(s)	310, 487, 871, 2340, 2455, 2577
BspEI	TCCGGA	2 cut(s)	1316, 2217
BspLI	GGNNCC	9 cut(s)	163, 492, 984, 1682, 2007, 2150, 2216, 2355, 2585
BspMI	ACCTGC	2 cut(s)	1460, 2494
BspPI	GGATC	4 cut(s)	970, 1427, 1675, 1688
BspQI	GCTCTTC	2 cut(s)	1034, 1562
BspT107I	GGYRCC	1 cut(s)	982
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	1 cut(s)	2548
BsrDI	GCAATG	2 cut(s)	1131, 1341
BsrFI	RCCGGY	1 cut(s)	1948
BsrGI	TGTACA	1 cut(s)	1806
BsrI	ACTGG	5 cut(s)	367, 1504, 2275, 2463, 2585
BssAI	RCCGGY	1 cut(s)	1948
BssECI	CCNNGG	3 cut(s)	389, 620, 1978
BssMI	GATC	5 cut(s)	962, 1432, 1680, 1795, 2131
BssNAI	GTATAC	1 cut(s)	1135
BssNI	GRCGYC	1 cut(s)	2157
BssT1I	CCWWGG	2 cut(s)	620, 1978
Bst1107I	GTATAC	1 cut(s)	1135
Bst2UI	CCWGG	2 cut(s)	1841, 2358
Bst4CI	ACNGT	4 cut(s)	305, 1806, 2403, 2631
BstACI	GRCGYC	1 cut(s)	2157
BstAUI	TGTACA	1 cut(s)	1806
BstC8I	GCNNGC	5 cut(s)	935, 939, 1261, 1413, 2010
BstHHI	GCGC	1 cut(s)	2503
BstKTI	GATC	5 cut(s)	965, 1435, 1683, 1798, 2134
BstMAI	GTCTC	3 cut(s)	497, 2245, 2567
BstMBI	GATC	5 cut(s)	962, 1432, 1680, 1795, 2131
BstMWI	GCNNNNNNNGC	1 cut(s)	2498
BstNI	CCWGG	2 cut(s)	1841, 2358
BstNSI	RCATGY	3 cut(s)	937, 1415, 1904
BstSCI	CCNGG	4 cut(s)	388, 1480, 1839, 2356
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	2202
BstV1I	GCAGC	8 cut(s)	228, 928, 1028, 1213, 1402, 1531, 1771, 2167
BstX2I	RGATCY	2 cut(s)	1432, 1680
BstYI	RGATCY	2 cut(s)	1432, 1680
BstZ17I	GTATAC	1 cut(s)	1135
BsuI	GTATCC	1 cut(s)	1195
BsuRI	GGCC	9 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008, 2492
BtgZI	GCGATG	1 cut(s)	1065
BtsIMutI	CAGTG	6 cut(s)	310, 360, 1497, 2268, 2456, 2578
BveI	ACCTGC	2 cut(s)	1460, 2494
Cac8I	GCNNGC	5 cut(s)	935, 939, 1261, 1413, 2010
CaiI	CAGNNNCTG	1 cut(s)	2571
CfoI	GCGC	1 cut(s)	2503
Cfr10I	RCCGGY	1 cut(s)	1948
Cfr13I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
Csp6I	GTAC	9 cut(s)	191, 983, 1491, 1802, 1807, 1881, 2017, 2430, 2543
CspAI	ACCGGT	1 cut(s)	1948
CviQI	GTAC	9 cut(s)	191, 983, 1491, 1802, 1807, 1881, 2017, 2430, 2543
DpnI	GATC	5 cut(s)	964, 1434, 1682, 1797, 2133
DpnII	GATC	5 cut(s)	962, 1432, 1680, 1795, 2131
DraI	TTTAAA	3 cut(s)	891, 2283, 2383
DraIII	CACNNNGTG	1 cut(s)	2605
Ecl136II	GAGCTC	3 cut(s)	150, 2072, 2310
Eco130I	CCWWGG	2 cut(s)	620, 1978
Eco147I	AGGCCT	1 cut(s)	1270
Eco24I	GRGCYC	5 cut(s)	152, 396, 2074, 2312, 2356
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	2148, 2273
Eco53kI	GAGCTC	3 cut(s)	150, 2072, 2310
Eco88I	CYCGRG	1 cut(s)	2248
EcoICRI	GAGCTC	3 cut(s)	150, 2072, 2310
EcoO109I	RGGNCCY	2 cut(s)	491, 2006
EcoRII	CCWGG	2 cut(s)	1839, 2356
EcoT14I	CCWWGG	2 cut(s)	620, 1978
EcoT22I	ATGCAT	1 cut(s)	1413
EcoT38I	GRGCYC	5 cut(s)	152, 396, 2074, 2312, 2356
ErhI	CCWWGG	2 cut(s)	620, 1978
Esp3I	CGTCTC	1 cut(s)	2245
FalI	AAGNNNNNCTT	2 cut(s)	2604, 2636
FaqI	GGGAC	5 cut(s)	695, 1288, 2070, 2134, 2231
FauNDI	CATATG	1 cut(s)	970
FbaI	TGATCA	1 cut(s)	2131
FblI	GTMKAC	2 cut(s)	1134, 1340
FriOI	GRGCYC	5 cut(s)	152, 396, 2074, 2312, 2356
FspBI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2427, 2603, 2638
FspI	TGCGCA	1 cut(s)	2502
GlaI	GCGC	1 cut(s)	2502
GsaI	CCCAGC	3 cut(s)	1065, 1110, 1215
GsuI	CTGGAG	1 cut(s)	2340
HaeIII	GGCC	9 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008, 2492
HapII	CCGG	5 cut(s)	389, 1317, 1481, 1949, 2218
HhaI	GCGC	1 cut(s)	2503
Hin1I	GRCGYC	1 cut(s)	2157
Hin6I	GCGC	1 cut(s)	2501
HinP1I	GCGC	1 cut(s)	2501
HincII	GTYRAC	1 cut(s)	2026
HindII	GTYRAC	1 cut(s)	2026
HindIII	AAGCTT	2 cut(s)	1529, 2105
HpaI	GTTAAC	1 cut(s)	2026
HpaII	CCGG	5 cut(s)	389, 1317, 1481, 1949, 2218
HphI	GGTGA	2 cut(s)	577, 2591
Hpy166II	GTNNAC	9 cut(s)	315, 902, 1135, 1341, 1777, 1809, 2026, 2200, 2543
Hpy188I	TCNGA	6 cut(s)	247, 438, 861, 1509, 1685, 2412
Hpy8I	GTNNAC	9 cut(s)	315, 902, 1135, 1341, 1777, 1809, 2026, 2200, 2543
HpyAV	CCTTC	5 cut(s)	575, 1123, 1201, 1354, 1514
HpyCH4III	ACNGT	4 cut(s)	305, 1806, 2403, 2631
HpyCH4IV	ACGT	4 cut(s)	1660, 2028, 2157, 2254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	2498
HpySE526I	ACGT	4 cut(s)	1660, 2028, 2157, 2254
Hsp92I	GRCGYC	1 cut(s)	2157
HspAI	GCGC	1 cut(s)	2501
Kpn2I	TCCGGA	2 cut(s)	1316, 2217
KpnI	GGTACC	1 cut(s)	986
Ksp22I	TGATCA	1 cut(s)	2131
KspAI	GTTAAC	1 cut(s)	2026
Kzo9I	GATC	5 cut(s)	962, 1432, 1680, 1795, 2131
LguI	GCTCTTC	2 cut(s)	1034, 1562
LmnI	GCTCC	5 cut(s)	147, 1177, 2177, 2359, 2553
Lsp1109I	GCAGC	8 cut(s)	228, 928, 1028, 1213, 1402, 1531, 1771, 2167
LweI	GCATC	8 cut(s)	833, 1003, 1088, 1213, 1500, 1826, 2353, 2428
MaeI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2427, 2603, 2638
MaeII	ACGT	4 cut(s)	1660, 2028, 2157, 2254
MaeIII	GTNAC	4 cut(s)	2266, 2461, 2506, 2519
MalI	GATC	5 cut(s)	964, 1434, 1682, 1797, 2133
MbiI	CCGCTC	1 cut(s)	2548
MboI	GATC	5 cut(s)	962, 1432, 1680, 1795, 2131
MfeI	CAATTG	2 cut(s)	509, 2554
MflI	RGATCY	2 cut(s)	1432, 1680
MhlI	GDGCHC	6 cut(s)	152, 396, 2074, 2202, 2312, 2356
MlyI	GAGTC	7 cut(s)	36, 535, 1205, 1310, 1727, 1754, 1911
MmeI	TCCRAC	7 cut(s)	189, 480, 936, 1095, 1345, 1977, 2155
Mph1103I	ATGCAT	1 cut(s)	1413
MroI	TCCGGA	2 cut(s)	1316, 2217
MslI	CAYNNNNRTG	3 cut(s)	1124, 1142, 1393
MspA1I	CMGCKG	2 cut(s)	1711, 2495
MspI	CCGG	5 cut(s)	389, 1317, 1481, 1949, 2218
MspR9I	CCNGG	4 cut(s)	390, 1482, 1841, 2358
MunI	CAATTG	2 cut(s)	509, 2554
Mva1269I	GAATGC	1 cut(s)	557
MvaI	CCWGG	2 cut(s)	1841, 2358
MwoI	GCNNNNNNNGC	1 cut(s)	2498
NciI	CCSGG	2 cut(s)	390, 1482
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	5 cut(s)	962, 1432, 1680, 1795, 2131
NlaIV	GGNNCC	9 cut(s)	163, 492, 984, 1682, 2007, 2150, 2216, 2355, 2585
NmeAIII	GCCGAG	1 cut(s)	2541
NmuCI	GTSAC	3 cut(s)	2266, 2506, 2519
NsbI	TGCGCA	1 cut(s)	2502
NsiI	ATGCAT	1 cut(s)	1413
NspI	RCATGY	3 cut(s)	937, 1415, 1904
PaeI	GCATGC	2 cut(s)	937, 1415
PceI	AGGCCT	1 cut(s)	1270
PciSI	GCTCTTC	2 cut(s)	1034, 1562
PctI	GAATGC	1 cut(s)	557
PfeI	GAWTC	9 cut(s)	341, 725, 829, 836, 1091, 2318, 2419, 2575, 2615
PflMI	CCANNNNNTGG	2 cut(s)	144, 409
PfoI	TCCNGGA	1 cut(s)	2356
PinAI	ACCGGT	1 cut(s)	1948
PleI	GAGTC	7 cut(s)	36, 535, 1204, 1309, 1726, 1753, 1911
PpsI	GAGTC	7 cut(s)	36, 535, 1204, 1309, 1726, 1753, 1911
PshBI	ATTAAT	1 cut(s)	570
PsiI	TTATAA	2 cut(s)	909, 1700
Psp124BI	GAGCTC	3 cut(s)	152, 2074, 2312
Psp1406I	AACGTT	1 cut(s)	2028
Psp6I	CCWGG	2 cut(s)	1839, 2356
PspFI	CCCAGC	3 cut(s)	1061, 1106, 1211
PspGI	CCWGG	2 cut(s)	1839, 2356
PspN4I	GGNNCC	9 cut(s)	163, 492, 984, 1682, 2007, 2150, 2216, 2355, 2585
PspPI	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
PstNI	CAGNNNCTG	1 cut(s)	2571
PsuI	RGATCY	2 cut(s)	1432, 1680
PvuII	CAGCTG	1 cut(s)	1711
RsaI	GTAC	9 cut(s)	192, 984, 1492, 1803, 1808, 1882, 2018, 2431, 2544
RsaNI	GTAC	9 cut(s)	191, 983, 1491, 1802, 1807, 1881, 2017, 2430, 2543
RseI	CAYNNNNRTG	3 cut(s)	1124, 1142, 1393
SacI	GAGCTC	3 cut(s)	152, 2074, 2312
SapI	GCTCTTC	2 cut(s)	1034, 1562
Sau3AI	GATC	5 cut(s)	962, 1432, 1680, 1795, 2131
Sau96I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
ScaI	AGTACT	1 cut(s)	1492
SchI	GAGTC	7 cut(s)	36, 535, 1205, 1310, 1727, 1754, 1911
ScrFI	CCNGG	4 cut(s)	390, 1482, 1841, 2358
SduI	GDGCHC	6 cut(s)	152, 396, 2074, 2202, 2312, 2356
SfaNI	GCATC	8 cut(s)	833, 1003, 1088, 1213, 1500, 1826, 2353, 2428
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	2 cut(s)	2148, 2273
SmiMI	CAYNNNNRTG	3 cut(s)	1124, 1142, 1393
SmlI	CTYRAG	2 cut(s)	552, 1559
SmoI	CTYRAG	2 cut(s)	552, 1559
SphI	GCATGC	2 cut(s)	937, 1415
SseBI	AGGCCT	1 cut(s)	1270
SsiI	CCGC	7 cut(s)	431, 791, 1006, 1651, 1914, 2493, 2546
SspMI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2427, 2603, 2638
SstI	GAGCTC	3 cut(s)	152, 2074, 2312
StuI	AGGCCT	1 cut(s)	1270
StyD4I	CCNGG	4 cut(s)	388, 1480, 1839, 2356
StyI	CCWWGG	2 cut(s)	620, 1978
TaaI	ACNGT	4 cut(s)	305, 1806, 2403, 2631
TaiI	ACGT	4 cut(s)	1663, 2031, 2160, 2257
TaqI	TCGA	8 cut(s)	384, 396, 601, 728, 1385, 1457, 1794, 2074
TatI	WGTACW	2 cut(s)	1490, 1806
TauI	GCSGC	3 cut(s)	433, 1008, 2495
TfiI	GAWTC	9 cut(s)	341, 725, 829, 836, 1091, 2318, 2419, 2575, 2615
TscAI	CASTG	6 cut(s)	310, 367, 1504, 2275, 2463, 2585
TseFI	GTSAC	3 cut(s)	2266, 2506, 2519
TseI	GCWGC	8 cut(s)	216, 941, 1016, 1226, 1415, 1544, 1784, 2180
Tsp45I	GTSAC	3 cut(s)	2266, 2506, 2519
TspGWI	ACGGA	2 cut(s)	1364, 2447
TspRI	CASTG	6 cut(s)	310, 367, 1504, 2275, 2463, 2585
Van91I	CCANNNNNTGG	2 cut(s)	144, 409
VneI	GTGCAC	1 cut(s)	2198
VpaK11BI	GGWCC	2 cut(s)	2148, 2273
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	4 cut(s)	31, 1551, 1970, 2301
XceI	RCATGY	3 cut(s)	937, 1415, 1904
XmiI	GTMKAC	2 cut(s)	1134, 1340
XspI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2427, 2603, 2638
ZraI	GACGTC	1 cut(s)	2158
ZrmI	AGTACT	1 cut(s)	1492
Zsp2I	ATGCAT	1 cut(s)	1413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.