Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00045

Orthogroup ID

OG0012332

Physical Location & Seq

Genomic Coordinates Reverse (-)

21199 .. 23731

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G001560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2496 bp

ATGATTTATAGGAGAAAGTTGTGTCCTAGAAATTTTGGCAGACTCTACAAAAACCCTGCCTTAAACCCTTTATTTCACAATTTCAATTCATACCCTAATCTCTGCACCAGAGAACTCAATAGTTATGTAGGAAGTTCCAGATTTTGGAGCTCTATAGTGGGTTCCAACTTAATTTCTCCTAAATGTTCCGTACCATTAAAACCCAATTTCATTGACAGCTCTAGGTTTTCAAGATTAAATCTTTCTGAAACTCCATTATCTGTTGGGTGTGCTTTTGTTAGAAATTACTCTTCTGGGAAGAGCAGTGATGAGTGGACTGAGGAAATTGAGTATTTGGATGAATCAGGAAGTGTTATTTACACTGGGAAAGGTATAAGGTCTGTCGAGCCGGGGCTCGATGACCATGTGATGGTGGGAGGTTTGAAAAAGCCGCTTCTGAACGCCTCTGCGATTGCTAAGATTGTTGAGGTTGTGAAGAGGTGGAAATGGGGGCCTGAGTTGGAGACCCAATTGGACAAACTCCAATTTGTGCCAAACATGACTCACATCACTCAAGCATTGAAGGTGATTAATGATAGTGAAGGGTCTTTGAGTTTGTTTCGATGGGCTAAGCGGCAACCTTGGTATTTGCCAAGTGATGAGTGTTATGTCTTATTGTTTGATGGCCTGAATGAAAGTAGGGACTTTGATGGGATTCAATCATTATTTGATGAAATGGTGCAGGATTCGAGTAATAATGGGGTTTTATCAGCTACTGCATATAATCGTGTCATTCAGTTTTTGGCTAAAGCGGATAAAATGGAGGTGTCATTTTGTTGTTTTAAGAAGATTCAAGATTCAGGATGTAAAGTTGATACTCAGACATACAATTCACTCATGCTTATATATGAAAGCATGCAAGCTGCAAATTGTTCGTTGGATGGATCAACGTATGAGTTGATGGTACCAAACTTGGCAAAGTCGGGCCGCCTTGATGCAGCATTTAAGCTCTTCCAAGAAATGAAAGAAAAGAATGTTAAACCCAGCTTTAATGTCTTTGCATCGCTTGTTGATTCAATGGGAAAAGCTGGGAGGTTGGACATGGCAATGAAGGTATACATGGAAATGCAGGGTTATGGTTTCAGGCCATCTGCTCCTATGTATGTATCCATGATTGAGTCAAATGTGAAGGCTGGGAAATTGGATGCTGCCCTTAGACTTTGGGATGAGATGAAGAAAGCAGGCTTTAGGCCTAACTTTGGCTTATACACAATGATTGTTGAGTCCCATGCAAAATCCGGAAAACTTGATATTGCAATGTCTACCTTTACGGATATGGAGAAGGTTGGATTTCTACCCACTCCATCTACATATTCATGTCTATTAGAAATGCACGCTGCCTCTGGACAAGTAGATCCTGCCATGAAGCTGTATAATTCGATGACCAATGCAGGTTTAAGACCAGGTATGAGTACTTACACTGGCCTTCTGATGCTCTTAGCTAATAAGAAGCTTGTGGATGTGGCTGCCAAAATTTTGCTTGAGATGAAGAGCATGGGATATTCTGTTGATGTGAGTGCTAGTGATGTACTGATGGTGTATATCAAGGATGGTTCTGTTGATGTTGCTCTGCGGTGGCTACGTTTCATGGGTTCATCAGGGATTCGAACAAATAATTTTATAATTAGACAGCTGTTTGAGTCATGTATGAAGAGTGGCTTGTATGAGTCAGCAAAGCCTCTCCTTGAAACTTATGTGAACTCAGCTGCAAAAGTCGATCTGGTACTGTACACATCCATTCTAGCACATCTTGTAAGATGCCAGGAAGAAGAGAATGAGAGGCATTTGATGTCAATACTTGGTACTACAAGACATAAGGCACATGCTTTTATGTGCGGACTCTTCACAGGCCCAGAACAGAGGGAACAACCAGTGTTATCTTTTGTGAGGGAATTTTTCCAAGGTATTGACTATGAGTTGGAAGAGGGGCCTGCTAGGTACTTTGTTAATGTTCTCCTCAATTACCTTGTTCTTATGGGGCAGATAAACCGAGCTCGATGTGTTTGGAAAGTCGCCTATGAGAACAAGCTTTTCCCAAAGGCAATAGTTTTTGATCAGCAAATAGCCTGGTCCCTTGATGTCAGAAACTTATCAGTTGGAGCTGCTCTTATATCGGTTGTGCATACTCTCCATAGGTTCCGGAAACGAATGTTGTATTATGGTGTTGTCCCAAGACGTATTAAGTTGGTCACTGGACCAACTTTGAAGATTGTGATTGCACAAATTTTGAGCTCTGTGGAATCTCCATTTGAGGTTAGTAAAGTAGTGCTGAGGGCTCCAGGAGATGCTGTCATGGAGTGGTTTAAAAAACCCATTGTTCAACAGTTTCTTCTGAATGAGATTCCATCTAGGTCTGACATCCTCATGCATAAGCTGAACACTCTTTTTCCTAGTTCCGCACCTGAACTAAGATCTCTATCTCCTCCCAAAATGCTCATTGGAAGGAAAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

831

Amino Acids

93.62

Weight (kDa)

9.01

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	227 - 393	3.1e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	252 - 293	1.5e-06	PPR repeat family
PPR_2	PF13041	310 - 350	2.9e-06	PPR repeat family
PPR_3	PF13812	365 - 420	2.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	380 - 412	8.4e-06	PPR repeat family
PPR_3	PF13812	401 - 457	3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	416 - 457	3e-06	PPR repeat family
TPR_24	PF23276	416 - 524	1.6e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	450 - 491	2.7e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79490
fragaria_vesca	FvH4_3g14450 FvH4_3g14450
malus_domestica	MD05G1236700.v1.1
prunus_persica	Prupe.4G129400_v2.0.a1
pyrus_communis	pycom05g21360
rosa_chinensis	RchiOBHm_Chr5g0023761
rosa_laevigata	RLG00000032735
rosa_multiflora	Rmu_sc0001372.1_g000009 Rmu_ssc0000027.1_g000014
rosa_roxburghii	Rroxscaffold_1G00055430
rosa_rugosa	Rorug05G0079500
rosa_samantha	Rh5AG169500 Rh5BG166900 Rh5CG182500 Rh5DG168800
rosa_wichuraiana	Rw0G001560 Rw0G005010 Rw5G015330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1661
Acc36I	ACCTGC	1 cut(s)	1421
Acc65I	GGTACC	1 cut(s)	943
AccB1I	GGYRCC	1 cut(s)	943
AccB7I	CCANNNNNTGG	2 cut(s)	144, 409
AccI	GTMKAC	2 cut(s)	1095, 1301
AccIII	TCCGGA	2 cut(s)	1277, 2178
AciI	CCGC	7 cut(s)	431, 613, 791, 967, 1612, 1875, 2436
AclWI	GGATC	2 cut(s)	931, 1388
AcsI	RAATTY	4 cut(s)	31, 1512, 1931, 2262
AfaI	GTAC	8 cut(s)	192, 945, 1453, 1569, 1764, 1769, 1843, 1979
AfiI	CCNNNNNNNGG	3 cut(s)	144, 409, 1238
AjnI	CCWGG	4 cut(s)	1441, 1800, 2105, 2317
Alw21I	GWGCWC	3 cut(s)	152, 2035, 2273
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	2 cut(s)	931, 1388
AlwNI	CAGNNNCTG	1 cut(s)	755
Aor13HI	TCCGGA	2 cut(s)	1277, 2178
AoxI	GGCC	8 cut(s)	491, 664, 964, 1124, 1229, 1462, 1888, 1967
ApeKI	GCWGC	7 cut(s)	902, 977, 1187, 1376, 1505, 1745, 2141
ApoI	RAATTY	4 cut(s)	31, 1512, 1931, 2262
AseI	ATTAAT	1 cut(s)	570
Asp718I	GGTACC	1 cut(s)	943
AspS9I	GGNCC	6 cut(s)	491, 964, 1889, 1967, 2109, 2234
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	577
AsuII	TTCGAA	1 cut(s)	1645
AvaII	GGWCC	2 cut(s)	2109, 2234
BanI	GGYRCC	1 cut(s)	943
BanII	GRGCYC	5 cut(s)	152, 396, 2035, 2273, 2317
Bbv12I	GWGCWC	3 cut(s)	152, 2035, 2273
BbvCI	CCTCAGC	1 cut(s)	2309
BbvI	GCAGC	7 cut(s)	889, 989, 1174, 1363, 1492, 1732, 2128
BcgI	CGANNNNNNTGC	2 cut(s)	894, 928
BciT130I	CCWGG	4 cut(s)	1443, 1802, 2107, 2319
BciVI	GTATCC	1 cut(s)	1156
BclI	TGATCA	1 cut(s)	2092
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	7 cut(s)	27, 222, 1560, 1781, 1974, 2388, 2430
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	1421
BfuI	GTATCC	1 cut(s)	1156
BglII	AGATCT	1 cut(s)	2450
BlpI	GCTNAGC	1 cut(s)	609
BmcAI	AGTACT	1 cut(s)	1453
Bme1390I	CCNGG	5 cut(s)	390, 1443, 1802, 2107, 2319
Bme18I	GGWCC	2 cut(s)	2109, 2234
BmgT120I	GGNCC	6 cut(s)	491, 964, 1889, 1967, 2109, 2234
BmiI	GGNNCC	7 cut(s)	163, 492, 945, 1968, 2111, 2177, 2316
BmrFI	CCNGG	5 cut(s)	390, 1443, 1802, 2107, 2319
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	6 cut(s)	964, 1049, 1174, 1461, 1787, 2314
BmuI	ACTGGG	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	2301
Bpu10I	CCTNAGC	1 cut(s)	2309
Bpu1102I	GCTNAGC	1 cut(s)	609
Bpu14I	TTCGAA	1 cut(s)	1645
BpuEI	CTTGAG	2 cut(s)	537, 1541
BpuMI	CCSGG	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	2455
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	389, 620, 1939
BsaWI	WCCGGW	2 cut(s)	1277, 2178
BsaXI	ACNNNNNCTCC	2 cut(s)	2313, 2343
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 409, 1238
Bse1I	ACTGG	4 cut(s)	367, 1465, 1910, 2236
Bse3DI	GCAATG	2 cut(s)	1092, 1302
Bse8I	GATNNNNATC	1 cut(s)	2455
BseAI	TCCGGA	2 cut(s)	1277, 2178
BseBI	CCWGG	4 cut(s)	1443, 1802, 2107, 2319
BseDI	CCNNGG	3 cut(s)	389, 620, 1939
BseGI	GGATG	9 cut(s)	343, 848, 925, 1189, 1210, 1504, 1594, 1772, 2397
BseJI	GATNNNNATC	1 cut(s)	2455
BseLI	CCNNNNNNNGG	3 cut(s)	144, 409, 1238
BseMI	GCAATG	2 cut(s)	1092, 1302
BseMII	CTCAG	5 cut(s)	309, 486, 872, 1755, 2300
BseNI	ACTGG	4 cut(s)	367, 1465, 1910, 2236
BseRI	GAGGAG	2 cut(s)	1985, 2451
BseXI	GCAGC	7 cut(s)	889, 989, 1174, 1363, 1492, 1732, 2128
BseYI	CCCAGC	3 cut(s)	1022, 1067, 1172
BsgI	GTGCAG	2 cut(s)	88, 740
BshFI	GGCC	8 cut(s)	493, 666, 966, 1126, 1231, 1464, 1890, 1969
BshNI	GGYRCC	1 cut(s)	943
BsiHKAI	GWGCWC	3 cut(s)	152, 2035, 2273
BsiSI	CCGG	3 cut(s)	389, 1278, 2179
BslFI	GGGAC	4 cut(s)	695, 1249, 2095, 2192
BslI	CCNNNNNNNGG	3 cut(s)	144, 409, 1238
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	4 cut(s)	695, 1249, 2095, 2192
BsnI	GGCC	8 cut(s)	493, 666, 966, 1126, 1231, 1464, 1890, 1969
Bso31I	GGTCTC	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	1645
Bsp1286I	GDGCHC	5 cut(s)	152, 396, 2035, 2273, 2317
Bsp13I	TCCGGA	2 cut(s)	1277, 2178
Bsp1407I	TGTACA	1 cut(s)	1767
Bsp143I	GATC	5 cut(s)	923, 1393, 1756, 2092, 2450
Bsp1720I	GCTNAGC	1 cut(s)	609
BspACI	CCGC	7 cut(s)	431, 613, 791, 967, 1612, 1875, 2436
BspANI	GGCC	8 cut(s)	493, 666, 966, 1126, 1231, 1464, 1890, 1969
BspCNI	CTCAG	5 cut(s)	310, 487, 871, 1754, 2301
BspEI	TCCGGA	2 cut(s)	1277, 2178
BspLI	GGNNCC	7 cut(s)	163, 492, 945, 1968, 2111, 2177, 2316
BspMI	ACCTGC	1 cut(s)	1421
BspPI	GGATC	2 cut(s)	931, 1388
BspQI	GCTCTTC	3 cut(s)	293, 995, 1523
BspT104I	TTCGAA	1 cut(s)	1645
BspT107I	GGYRCC	1 cut(s)	943
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	2 cut(s)	1092, 1302
BsrGI	TGTACA	1 cut(s)	1767
BsrI	ACTGG	4 cut(s)	367, 1465, 1910, 2236
BssECI	CCNNGG	3 cut(s)	389, 620, 1939
BssMI	GATC	5 cut(s)	923, 1393, 1756, 2092, 2450
BssNAI	GTATAC	1 cut(s)	1096
BssT1I	CCWWGG	2 cut(s)	620, 1939
Bst1107I	GTATAC	1 cut(s)	1096
Bst2UI	CCWGG	4 cut(s)	1443, 1802, 2107, 2319
Bst4CI	ACNGT	2 cut(s)	1767, 2364
Bst6I	CTCTTC	9 cut(s)	293, 295, 470, 995, 1523, 1685, 1803, 1886, 1956
BstAUI	TGTACA	1 cut(s)	1767
BstBI	TTCGAA	1 cut(s)	1645
BstC8I	GCNNGC	5 cut(s)	896, 900, 1222, 1374, 1971
BstF5I	GGATG	9 cut(s)	343, 848, 925, 1189, 1210, 1504, 1594, 1772, 2397
BstKTI	GATC	5 cut(s)	926, 1396, 1759, 2095, 2453
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	5 cut(s)	923, 1393, 1756, 2092, 2450
BstNI	CCWGG	4 cut(s)	1443, 1802, 2107, 2319
BstNSI	RCATGY	2 cut(s)	898, 1865
BstSCI	CCNGG	5 cut(s)	388, 1441, 1800, 2105, 2317
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	7 cut(s)	889, 989, 1174, 1363, 1492, 1732, 2128
BstX2I	RGATCY	2 cut(s)	1393, 2450
BstYI	RGATCY	2 cut(s)	1393, 2450
BstZ17I	GTATAC	1 cut(s)	1096
BsuI	GTATCC	1 cut(s)	1156
BsuRI	GGCC	8 cut(s)	493, 666, 966, 1126, 1231, 1464, 1890, 1969
BtgZI	GCGATG	1 cut(s)	1026
BtsCI	GGATG	9 cut(s)	343, 848, 925, 1189, 1210, 1504, 1594, 1772, 2397
BtsI	GCAGTG	1 cut(s)	310
BtsIMutI	CAGTG	5 cut(s)	310, 360, 1458, 1917, 2229
BveI	ACCTGC	1 cut(s)	1421
Cac8I	GCNNGC	5 cut(s)	896, 900, 1222, 1374, 1971
CaiI	CAGNNNCTG	1 cut(s)	755
Cfr13I	GGNCC	6 cut(s)	491, 964, 1889, 1967, 2109, 2234
CsiI	ACCWGGT	1 cut(s)	1441
Csp6I	GTAC	8 cut(s)	191, 944, 1452, 1568, 1763, 1768, 1842, 1978
CviQI	GTAC	8 cut(s)	191, 944, 1452, 1568, 1763, 1768, 1842, 1978
DpnI	GATC	5 cut(s)	925, 1395, 1758, 2094, 2452
DpnII	GATC	5 cut(s)	923, 1393, 1756, 2092, 2450
DraI	TTTAAA	1 cut(s)	2344
Eam1104I	CTCTTC	9 cut(s)	293, 295, 470, 995, 1523, 1685, 1803, 1886, 1956
EarI	CTCTTC	9 cut(s)	293, 295, 470, 995, 1523, 1685, 1803, 1886, 1956
Ecl136II	GAGCTC	3 cut(s)	150, 2033, 2271
Eco130I	CCWWGG	2 cut(s)	620, 1939
Eco147I	AGGCCT	1 cut(s)	1231
Eco24I	GRGCYC	5 cut(s)	152, 396, 2035, 2273, 2317
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	2109, 2234
Eco53kI	GAGCTC	3 cut(s)	150, 2033, 2271
EcoICRI	GAGCTC	3 cut(s)	150, 2033, 2271
EcoO109I	RGGNCCY	2 cut(s)	491, 1967
EcoRII	CCWGG	4 cut(s)	1441, 1800, 2105, 2317
EcoT14I	CCWWGG	2 cut(s)	620, 1939
EcoT22I	ATGCAT	1 cut(s)	2409
EcoT38I	GRGCYC	5 cut(s)	152, 396, 2035, 2273, 2317
ErhI	CCWWGG	2 cut(s)	620, 1939
FalI	AAGNNNNNCTT	2 cut(s)	1682, 1714
FaqI	GGGAC	4 cut(s)	695, 1249, 2095, 2192
FbaI	TGATCA	1 cut(s)	2092
FblI	GTMKAC	2 cut(s)	1095, 1301
FokI	GGATG	9 cut(s)	350, 855, 932, 1196, 1217, 1511, 1601, 1759, 2384
FriOI	GRGCYC	5 cut(s)	152, 396, 2035, 2273, 2317
FspBI	CTAG	7 cut(s)	27, 222, 1560, 1781, 1974, 2388, 2430
GsaI	CCCAGC	3 cut(s)	1026, 1071, 1176
GsuI	CTGGAG	1 cut(s)	2301
HaeIII	GGCC	8 cut(s)	493, 666, 966, 1126, 1231, 1464, 1890, 1969
HapII	CCGG	3 cut(s)	389, 1278, 2179
HindIII	AAGCTT	2 cut(s)	1490, 2066
HpaII	CCGG	3 cut(s)	389, 1278, 2179
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	5 cut(s)	315, 1096, 1302, 1738, 1770
Hpy188I	TCNGA	7 cut(s)	247, 438, 861, 1470, 2123, 2373, 2395
Hpy188III	TCNNGA	8 cut(s)	138, 231, 345, 833, 840, 1278, 1383, 2179
Hpy8I	GTNNAC	5 cut(s)	315, 1096, 1302, 1738, 1770
HpyAV	CCTTC	7 cut(s)	556, 575, 1084, 1162, 1315, 1475, 2475
HpyCH4III	ACNGT	2 cut(s)	1767, 2364
HpyCH4IV	ACGT	3 cut(s)	929, 1621, 2215
HpySE526I	ACGT	3 cut(s)	929, 1621, 2215
Kpn2I	TCCGGA	2 cut(s)	1277, 2178
KpnI	GGTACC	1 cut(s)	947
Ksp22I	TGATCA	1 cut(s)	2092
Kzo9I	GATC	5 cut(s)	923, 1393, 1756, 2092, 2450
LguI	GCTCTTC	3 cut(s)	293, 995, 1523
LmnI	GCTCC	4 cut(s)	147, 1138, 2138, 2320
Lsp1109I	GCAGC	7 cut(s)	889, 989, 1174, 1363, 1492, 1732, 2128
LweI	GCATC	6 cut(s)	964, 1049, 1174, 1461, 1787, 2314
MabI	ACCWGGT	1 cut(s)	1441
MaeI	CTAG	7 cut(s)	27, 222, 1560, 1781, 1974, 2388, 2430
MaeII	ACGT	3 cut(s)	929, 1621, 2215
MaeIII	GTNAC	1 cut(s)	2227
MalI	GATC	5 cut(s)	925, 1395, 1758, 2094, 2452
MboI	GATC	5 cut(s)	923, 1393, 1756, 2092, 2450
MfeI	CAATTG	1 cut(s)	509
MflI	RGATCY	2 cut(s)	1393, 2450
MhlI	GDGCHC	5 cut(s)	152, 396, 2035, 2273, 2317
MlyI	GAGTC	7 cut(s)	36, 535, 1166, 1271, 1688, 1715, 1872
MmeI	TCCRAC	7 cut(s)	189, 480, 897, 1056, 1306, 1938, 2116
Mph1103I	ATGCAT	1 cut(s)	2409
MroI	TCCGGA	2 cut(s)	1277, 2178
MslI	CAYNNNNRTG	4 cut(s)	1085, 1103, 1354, 2402
MspA1I	CMGCKG	2 cut(s)	1672, 1745
MspI	CCGG	3 cut(s)	389, 1278, 2179
MspR9I	CCNGG	5 cut(s)	390, 1443, 1802, 2107, 2319
MunI	CAATTG	1 cut(s)	509
MvaI	CCWGG	4 cut(s)	1443, 1802, 2107, 2319
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	5 cut(s)	923, 1393, 1756, 2092, 2450
NlaIV	GGNNCC	7 cut(s)	163, 492, 945, 1968, 2111, 2177, 2316
NmuCI	GTSAC	1 cut(s)	2227
NsiI	ATGCAT	1 cut(s)	2409
NspI	RCATGY	2 cut(s)	898, 1865
NspV	TTCGAA	1 cut(s)	1645
PaeI	GCATGC	1 cut(s)	898
PceI	AGGCCT	1 cut(s)	1231
PciSI	GCTCTTC	3 cut(s)	293, 995, 1523
PfeI	GAWTC	9 cut(s)	341, 694, 725, 829, 836, 1052, 1642, 2279, 2380
PflMI	CCANNNNNTGG	2 cut(s)	144, 409
PfoI	TCCNGGA	1 cut(s)	2317
PleI	GAGTC	7 cut(s)	36, 535, 1165, 1270, 1687, 1714, 1872
PpsI	GAGTC	7 cut(s)	36, 535, 1165, 1270, 1687, 1714, 1872
PshBI	ATTAAT	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	1661
Psp124BI	GAGCTC	3 cut(s)	152, 2035, 2273
Psp6I	CCWGG	4 cut(s)	1441, 1800, 2105, 2317
PspFI	CCCAGC	3 cut(s)	1022, 1067, 1172
PspGI	CCWGG	4 cut(s)	1441, 1800, 2105, 2317
PspN4I	GGNNCC	7 cut(s)	163, 492, 945, 1968, 2111, 2177, 2316
PspPI	GGNCC	6 cut(s)	491, 964, 1889, 1967, 2109, 2234
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	2 cut(s)	1393, 2450
PvuII	CAGCTG	2 cut(s)	1672, 1745
RsaI	GTAC	8 cut(s)	192, 945, 1453, 1569, 1764, 1769, 1843, 1979
RsaNI	GTAC	8 cut(s)	191, 944, 1452, 1568, 1763, 1768, 1842, 1978
RseI	CAYNNNNRTG	4 cut(s)	1085, 1103, 1354, 2402
SacI	GAGCTC	3 cut(s)	152, 2035, 2273
SapI	GCTCTTC	3 cut(s)	293, 995, 1523
Sau3AI	GATC	5 cut(s)	923, 1393, 1756, 2092, 2450
Sau96I	GGNCC	6 cut(s)	491, 964, 1889, 1967, 2109, 2234
ScaI	AGTACT	1 cut(s)	1453
SchI	GAGTC	7 cut(s)	36, 535, 1166, 1271, 1688, 1715, 1872
ScrFI	CCNGG	5 cut(s)	390, 1443, 1802, 2107, 2319
SduI	GDGCHC	5 cut(s)	152, 396, 2035, 2273, 2317
SexAI	ACCWGGT	1 cut(s)	1441
SfaNI	GCATC	6 cut(s)	964, 1049, 1174, 1461, 1787, 2314
SfcI	CTRYAG	1 cut(s)	153
SfuI	TTCGAA	1 cut(s)	1645
SinI	GGWCC	2 cut(s)	2109, 2234
SmiMI	CAYNNNNRTG	4 cut(s)	1085, 1103, 1354, 2402
SmlI	CTYRAG	2 cut(s)	552, 1520
SmoI	CTYRAG	2 cut(s)	552, 1520
SphI	GCATGC	1 cut(s)	898
SseBI	AGGCCT	1 cut(s)	1231
SsiI	CCGC	7 cut(s)	431, 613, 791, 967, 1612, 1875, 2436
SspMI	CTAG	7 cut(s)	27, 222, 1560, 1781, 1974, 2388, 2430
SstI	GAGCTC	3 cut(s)	152, 2035, 2273
StuI	AGGCCT	1 cut(s)	1231
StyD4I	CCNGG	5 cut(s)	388, 1441, 1800, 2105, 2317
StyI	CCWWGG	2 cut(s)	620, 1939
TaaI	ACNGT	2 cut(s)	1767, 2364
TaiI	ACGT	3 cut(s)	932, 1624, 2218
TaqI	TCGA	8 cut(s)	384, 396, 601, 728, 1418, 1645, 1755, 2035
TatI	WGTACW	3 cut(s)	1451, 1567, 1767
TauI	GCSGC	3 cut(s)	433, 616, 969
TfiI	GAWTC	9 cut(s)	341, 694, 725, 829, 836, 1052, 1642, 2279, 2380
TscAI	CASTG	5 cut(s)	310, 367, 1465, 1917, 2236
TseFI	GTSAC	1 cut(s)	2227
TseI	GCWGC	7 cut(s)	902, 977, 1187, 1376, 1505, 1745, 2141
Tsp45I	GTSAC	1 cut(s)	2227
TspGWI	ACGGA	2 cut(s)	178, 1325
TspRI	CASTG	5 cut(s)	310, 367, 1465, 1917, 2236
Van91I	CCANNNNNTGG	2 cut(s)	144, 409
VpaK11BI	GGWCC	2 cut(s)	2109, 2234
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	4 cut(s)	31, 1512, 1931, 2262
XceI	RCATGY	2 cut(s)	898, 1865
XmiI	GTMKAC	2 cut(s)	1095, 1301
XspI	CTAG	7 cut(s)	27, 222, 1560, 1781, 1974, 2388, 2430
ZrmI	AGTACT	1 cut(s)	1453
Zsp2I	ATGCAT	1 cut(s)	2409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.