FvH4_3g18470

Olee1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016288
Physical Location & Seq
Forward (+)
11797614 .. 11798709
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18470.t1

Sequence Viewer

Length: 501 bp
ATGGCCAAGACTTTGGTAGTCACAGCTGTTGTTCTCACTGTATTTTGCTTGTGCTCTTTGGCCAATGCCGACGGCCAGAATATTAGCAAAATCTTTGTGGAGGGCAAGGTGTACTGTGATCCCTGCCGTGTCCAATTCCAAACCAGAATCAGCGAACCTATCGACGGTGCCACAGTAGAGTTGCAATGCAGGAGCCGCGTAAATTCAACCGTCTTTAACAAACTTCAAGGCAAGACCAATAAGGATGGCCTTTACACTCTTTCGGTGGATGAGGACTACGCAAACGAGATCTGCGAGGTGAAGACAGTGAGCAGCCCTAGGGCGGATTGCAACGACCGTTTCAATGACTTTGAGAAGGCTAGAGTTTTGATCACAAATAACAATGGTGTTGCTTCCACGGCTCGTTATGCCAATCCCCTTGGGTTCATGAAGAAGGAAGCAGTTCCTGAGTGCGAGCAAGTACTCAAGGAACTGTTTCCCGAGGAGCAGACCGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

167

Amino Acids

18.47

Weight (kDa)

4.93

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 33 - 113 3.3e-17 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016288)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18470
malus_domestica MD03G1241700.v1.1 MD11G1261000.v1.1
prunus_persica Prupe.4G167200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031231
rosa_laevigata RLG00000033293
rosa_multiflora Rmu_sc0004014.1_g000008
rosa_roxburghii Rroxscaffold_1G00049050
rosa_rugosa Rorug05G0123000
rosa_samantha Rh5AG216600 Rh5BG216000 Rh5CG239800 Rh5DG221100
rosa_wichuraiana Rw0G010930 Rw5G019810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccII CGCG 1 cut(s) 198
AciI CCGC 2 cut(s) 196, 323
AclWI GGATC 1 cut(s) 113
AcoI YGGCCR 3 cut(s) 3, 60, 73
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 2 cut(s) 113, 462
AfiI CCNNNNNNNGG 2 cut(s) 164, 322
AgsI TTSAA 3 cut(s) 207, 227, 343
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw21I GWGCWC 1 cut(s) 56
AlwI GGATC 1 cut(s) 113
AlwNI CAGNNNCTG 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 4 cut(s) 3, 60, 73, 247
ApeKI GCWGC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 202
Asp700I GAANNNNTTC 2 cut(s) 441, 474
AspA2I CCTAGG 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 479
AvrII CCTAGG 1 cut(s) 317
BalI TGGCCA 2 cut(s) 5, 62
BanI GGYRCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 239
BceAI ACGGC 3 cut(s) 88, 111, 414
BclI TGATCA 1 cut(s) 369
BfaI CTAG 2 cut(s) 318, 360
BglII AGATCT 1 cut(s) 288
BisI GCNGC 2 cut(s) 196, 313
BlnI CCTAGG 1 cut(s) 317
BlsI GCNGC 2 cut(s) 197, 314
BmcAI AGTACT 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 479
BmiI GGNNCC 2 cut(s) 169, 194
BpiI GAAGAC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 449
BsaJI CCNNGG 4 cut(s) 317, 396, 418, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 322
Bse3DI GCAATG 1 cut(s) 191
BseDI CCNNGG 4 cut(s) 317, 396, 418, 480
BseGI GGATG 2 cut(s) 250, 274
BseLI CCNNNNNNNGG 2 cut(s) 164, 322
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 438
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 4 cut(s) 5, 62, 75, 249
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 479
BslI CCNNNNNNNGG 2 cut(s) 164, 322
BsnI GGCC 4 cut(s) 5, 62, 75, 249
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 3 cut(s) 118, 288, 369
BspACI CCGC 2 cut(s) 196, 323
BspANI GGCC 4 cut(s) 5, 62, 75, 249
BspCNI CTCAG 1 cut(s) 439
BspFNI CGCG 1 cut(s) 198
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 169, 194
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 191
BssECI CCNNGG 4 cut(s) 317, 396, 418, 480
BssMI GATC 3 cut(s) 118, 288, 369
BssT1I CCWWGG 2 cut(s) 317, 418
Bst4CI ACNGT 8 cut(s) 40, 116, 167, 175, 211, 307, 338, 474
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 447
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 250, 274
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 3 cut(s) 121, 291, 372
BstMBI GATC 3 cut(s) 118, 288, 369
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 3 cut(s) 195, 398, 407
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 288
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 1 cut(s) 288
BsuRI GGCC 4 cut(s) 5, 62, 75, 249
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 250, 274
BtsIMutI CAGTG 2 cut(s) 36, 312
Cac8I GCNNGC 1 cut(s) 455
CaiI CAGNNNCTG 1 cut(s) 446
CciI TCATGA 1 cut(s) 426
Csp6I GTAC 2 cut(s) 112, 461
CviAII CATG 1 cut(s) 427
CviJI RGCY 9 cut(s) 5, 26, 62, 75, 195, 249, 315, 359, 401
CviKI_1 RGCY 9 cut(s) 5, 26, 62, 75, 195, 249, 315, 359, 401
CviQI GTAC 2 cut(s) 112, 461
DdeI CTNAG 1 cut(s) 447
DpnI GATC 3 cut(s) 120, 290, 371
DpnII GATC 3 cut(s) 118, 288, 369
EaeI YGGCCR 3 cut(s) 3, 60, 73
EciI GGCGGA 1 cut(s) 338
Eco130I CCWWGG 2 cut(s) 317, 418
Eco88I CYCGRG 1 cut(s) 479
EcoT14I CCWWGG 2 cut(s) 317, 418
ErhI CCWWGG 2 cut(s) 317, 418
FaeI CATG 1 cut(s) 430
FaiI YATR 2 cut(s) 408, 428
FatI CATG 1 cut(s) 426
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 196, 313
FokI GGATG 2 cut(s) 257, 281
Fsp4HI GCNGC 2 cut(s) 196, 313
FspBI CTAG 2 cut(s) 318, 360
GluI GCNGC 2 cut(s) 196, 313
HaeIII GGCC 4 cut(s) 5, 62, 75, 249
Hin1II CATG 1 cut(s) 430
HinfI GANTC 1 cut(s) 147
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 112
Hpy188III TCNNGA 3 cut(s) 427, 446, 479
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 2 cut(s) 74, 167
HpyAV CCTTC 2 cut(s) 349, 427
HpyCH4III ACNGT 8 cut(s) 40, 116, 167, 175, 211, 307, 338, 474
HpyCH4V TGCA 3 cut(s) 184, 189, 330
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 398, 407
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 1 cut(s) 430
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 3 cut(s) 118, 288, 369
LmnI GCTCC 2 cut(s) 192, 484
LpnPI CCDG 5 cut(s) 89, 136, 157, 175, 459
Lsp1109I GCAGC 1 cut(s) 324
MaeI CTAG 2 cut(s) 318, 360
MaeIII GTNAC 1 cut(s) 19
MalI GATC 3 cut(s) 120, 290, 371
MboI GATC 3 cut(s) 118, 288, 369
MboII GAAGA 2 cut(s) 313, 442
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 2 cut(s) 5, 62
MluCI AATT 2 cut(s) 134, 202
MluNI TGGCCA 2 cut(s) 5, 62
MnlI CCTC 4 cut(s) 94, 265, 289, 475
Mox20I TGGCCA 2 cut(s) 5, 62
MroXI GAANNNNTTC 2 cut(s) 441, 474
MscI TGGCCA 2 cut(s) 5, 62
MseI TTAA 1 cut(s) 216
Msp20I TGGCCA 2 cut(s) 5, 62
MspA1I CMGCKG 1 cut(s) 26
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 195, 398, 407
NdeII GATC 3 cut(s) 118, 288, 369
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 2 cut(s) 169, 194
NmuCI GTSAC 1 cut(s) 19
PagI TCATGA 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PdmI GAANNNNTTC 2 cut(s) 441, 474
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 2 cut(s) 197, 314
PspN4I GGNNCC 2 cut(s) 169, 194
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 288
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 2 cut(s) 113, 462
RsaNI GTAC 2 cut(s) 112, 461
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 2 cut(s) 196, 313
Sau3AI GATC 3 cut(s) 118, 288, 369
ScaI AGTACT 1 cut(s) 462
SduI GDGCHC 1 cut(s) 56
SetI ASST 4 cut(s) 28, 111, 160, 300
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 2 cut(s) 134, 202
SsiI CCGC 2 cut(s) 196, 323
SspI AATATT 1 cut(s) 82
SspMI CTAG 2 cut(s) 318, 360
StyI CCWWGG 2 cut(s) 317, 418
TaaI ACNGT 8 cut(s) 40, 116, 167, 175, 211, 307, 338, 474
TaqI TCGA 1 cut(s) 162
TasI AATT 2 cut(s) 134, 202
TatI WGTACW 2 cut(s) 111, 460
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 2 cut(s) 43, 312
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 415, 443
TspRI CASTG 2 cut(s) 43, 312
XapI RAATTY 1 cut(s) 202
XmaJI CCTAGG 1 cut(s) 317
XmnI GAANNNNTTC 2 cut(s) 441, 474
XspI CTAG 2 cut(s) 318, 360
ZrmI AGTACT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.