MD11G1261000.v1.1

Olee1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016288
Physical Location & Seq
Reverse (-)
37533761 .. 37535001
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1261000.v1.1.491

Sequence Viewer

Length: 501 bp
ATGGCCAAGGCTTCGGGTATCGCAGCACTCTTCGTTACCTTGTCCTGCTTCTACTCTCTGGCATACGCCACCACCGGTGCCGACATCGAAACTCTATTTGTGGAGGGTAAGGTGTACTGCGACCCATGCCGCGTCCAGTTCGAGACTAGACTCAGCACACCCCTCGACGGTGCTACGGTAGCCTTGGAGTGCAGAAGCCGTGAAAATGGTACAATGGTATACACACTCGAAGGCAAGACCGATAAGAATGGCATCTACAGTCTGCCCGCCGACAAGAACTTTGAGGAGCAAATCTGTGAGGTGAGGACCGTGAGCAGCCCTACCGGTGATTGCGCTGACCACTTCGACATCGAGAAGGCTAGGATTTTGCTCACTCACAACAATGGTGTGAAGGCCATGGCTCGCTACGCCAACCCCCTTGGGTTCATGAAGAAGGAGAGTACAACAGAGTGCGAGGCAGTTCTTAAGGAATTGTTCCCCGAGGAGACTGAAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

167

Amino Acids

18.32

Weight (kDa)

4.74

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 34 - 118 3.7e-18 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016288)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18470
malus_domestica MD03G1241700.v1.1 MD11G1261000.v1.1
prunus_persica Prupe.4G167200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031231
rosa_laevigata RLG00000033293
rosa_multiflora Rmu_sc0004014.1_g000008
rosa_roxburghii Rroxscaffold_1G00049050
rosa_rugosa Rorug05G0123000
rosa_samantha Rh5AG216600 Rh5BG216000 Rh5CG239800 Rh5DG221100
rosa_wichuraiana Rw0G010930 Rw5G019810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 132
AciI CCGC 2 cut(s) 130, 267
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 3 cut(s) 116, 211, 442
AfiI CCNNNNNNNGG 1 cut(s) 167
AflII CTTAAG 1 cut(s) 464
AgeI ACCGGT 2 cut(s) 74, 323
Alw26I GTCTC 2 cut(s) 137, 479
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 2 cut(s) 3, 393
ApeKI GCWGC 2 cut(s) 23, 315
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
AsiGI ACCGGT 2 cut(s) 74, 323
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 313, 338
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 1 cut(s) 306
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 35, 327
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BcoDI GTCTC 2 cut(s) 137, 479
BfaI CTAG 2 cut(s) 147, 360
BfmI CTRYAG 1 cut(s) 256
BfrI CTTAAG 1 cut(s) 464
BisI GCNGC 3 cut(s) 24, 130, 316
BlsI GCNGC 3 cut(s) 25, 131, 317
Bme18I GGWCC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 261
BsaJI CCNNGG 5 cut(s) 6, 183, 396, 418, 480
BsaWI WCCGGW 2 cut(s) 74, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 2 cut(s) 74, 323
Bse1I ACTGG 1 cut(s) 136
BseDI CCNNGG 5 cut(s) 6, 183, 396, 418, 480
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 2 cut(s) 299, 497
BseXI GCAGC 2 cut(s) 35, 327
BsgI GTGCAG 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 5, 395
BshNI GGYRCC 1 cut(s) 77
BshTI ACCGGT 2 cut(s) 74, 323
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 2 cut(s) 75, 324
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 137, 479
BsnI GGCC 2 cut(s) 5, 395
BsoBI CYCGRG 1 cut(s) 479
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 2 cut(s) 130, 267
BspANI GGCC 2 cut(s) 5, 395
BspCNI CTCAG 1 cut(s) 165
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BspTI CTTAAG 1 cut(s) 464
BsrFI RCCGGY 2 cut(s) 74, 323
BsrI ACTGG 1 cut(s) 136
BssAI RCCGGY 2 cut(s) 74, 323
BssECI CCNNGG 5 cut(s) 6, 183, 396, 418, 480
BssNAI GTATAC 1 cut(s) 220
BssT1I CCWWGG 4 cut(s) 6, 183, 396, 418
Bst1107I GTATAC 1 cut(s) 220
Bst4CI ACNGT 4 cut(s) 170, 178, 260, 310
Bst6I CTCTTC 1 cut(s) 35
BstAFI CTTAAG 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 267, 403
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 396
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 335
BstMAI GTCTC 2 cut(s) 137, 479
BstMWI GCNNNNNNNGC 3 cut(s) 126, 179, 407
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 35, 327
BstZ17I GTATAC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 5, 395
BtgI CCRYGG 1 cut(s) 396
Cac8I GCNNGC 2 cut(s) 267, 403
CciI TCATGA 1 cut(s) 426
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 2 cut(s) 74, 323
Cfr13I GGNCC 1 cut(s) 306
CseI GACGC 1 cut(s) 121
Csp6I GTAC 3 cut(s) 115, 210, 441
CspAI ACCGGT 2 cut(s) 74, 323
CviAII CATG 3 cut(s) 126, 397, 427
CviJI RGCY 8 cut(s) 5, 11, 182, 198, 318, 359, 395, 401
CviKI_1 RGCY 8 cut(s) 5, 11, 182, 198, 318, 359, 395, 401
CviQI GTAC 3 cut(s) 115, 210, 441
DdeI CTNAG 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco130I CCWWGG 4 cut(s) 6, 183, 396, 418
Eco47I GGWCC 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 479
EcoT14I CCWWGG 4 cut(s) 6, 183, 396, 418
ErhI CCWWGG 4 cut(s) 6, 183, 396, 418
FaeI CATG 3 cut(s) 129, 400, 430
FaiI YATR 5 cut(s) 64, 127, 220, 398, 428
FatI CATG 3 cut(s) 125, 396, 426
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 24, 130, 316
Fsp4HI GCNGC 3 cut(s) 24, 130, 316
FspBI CTAG 2 cut(s) 147, 360
GlaI GCGC 1 cut(s) 334
GluI GCNGC 3 cut(s) 24, 130, 316
HaeIII GGCC 2 cut(s) 5, 395
HapII CCGG 2 cut(s) 75, 324
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 335
Hin1II CATG 3 cut(s) 129, 400, 430
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HinfI GANTC 1 cut(s) 150
HpaII CCGG 2 cut(s) 75, 324
HphI GGTGA 2 cut(s) 313, 338
Hpy166II GTNNAC 2 cut(s) 115, 220
Hpy188III TCNNGA 3 cut(s) 142, 352, 427
Hpy8I GTNNAC 2 cut(s) 115, 220
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 4 cut(s) 224, 349, 385, 427
HpyCH4III ACNGT 4 cut(s) 170, 178, 260, 310
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 179, 407
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 3 cut(s) 129, 400, 430
HspAI GCGC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 5 cut(s) 44, 58, 88, 149, 337
Lsp1109I GCAGC 2 cut(s) 35, 327
LweI GCATC 1 cut(s) 261
MaeI CTAG 2 cut(s) 147, 360
MaeIII GTNAC 1 cut(s) 34
MboII GAAGA 2 cut(s) 22, 442
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 470
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 7 cut(s) 97, 173, 277, 292, 297, 448, 475
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 2 cut(s) 75, 324
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 126, 179, 407
NcoI CCATGG 1 cut(s) 396
NlaIII CATG 3 cut(s) 129, 400, 430
NlaIV GGNNCC 1 cut(s) 79
PagI TCATGA 1 cut(s) 426
PinAI ACCGGT 2 cut(s) 74, 323
PkrI GCNGC 3 cut(s) 25, 131, 317
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 306
RsaI GTAC 3 cut(s) 116, 211, 442
RsaNI GTAC 3 cut(s) 115, 210, 441
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 3 cut(s) 24, 130, 316
Sau96I GGNCC 1 cut(s) 306
SchI GAGTC 1 cut(s) 144
SetI ASST 3 cut(s) 41, 114, 303
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 256
SgrAI CRCCGGYG 1 cut(s) 74
SinI GGWCC 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 1 cut(s) 470
SsiI CCGC 2 cut(s) 130, 267
SspMI CTAG 2 cut(s) 147, 360
StyI CCWWGG 4 cut(s) 6, 183, 396, 418
TaaI ACNGT 4 cut(s) 170, 178, 260, 310
TaqI TCGA 6 cut(s) 87, 141, 165, 228, 345, 351
TaqII GACCGA 1 cut(s) 254
TasI AATT 1 cut(s) 470
TatI WGTACW 2 cut(s) 114, 440
TauI GCSGC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TseI GCWGC 2 cut(s) 23, 315
TspDTI ATGAA 2 cut(s) 415, 443
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 2 cut(s) 147, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.