MD03G1241700.v1.1

Olee1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0016288
Physical Location & Seq
Reverse (-)
32672151 .. 32673332
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1241700.v1.1.491

Sequence Viewer

Length: 501 bp
ATGGCCAAGGCTTTGGGTATCGCAGCACTCTTCATCACCTTGTCCTGCTTCTACTCTCTCGCATACGCCACCACGGGTGCCGCCACCAGAACTCTCTTCGTGGAGGGCAAGGTGTACTGCGACCCATGTCGTGTCCAATTCGAGACAAGACTCAGCACACCCGTTGACGGTGCTACGGTAGCCTTGGAGTGCAGAAGCCGTGAAAATGGTACCATCGTATACGTAGTCGAAGGCAAGACCGATAAGAATGGCATCTACAGTCTGGCCTCCCACAAGGAATTTGAGGAGCAAATCTGTGAGGTGAGGACCGTGCGCAGCCCTACCGATCAGTGCGCTGACCACTTCGACTTCGAGAGGGCTAGGATTTTGCTCACGGACAACAATGGTGTGAACGCCTTGGCTCGCTACGCCAACCCCCTTGGGTTCATGACGAAGGAGAGTACTTATGAGTGCGAGGCAGTTCTTAAGGAATTGTTCCCCGAGGAGACTGAAGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

167

Amino Acids

18.49

Weight (kDa)

4.83

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 34 - 117 5.6e-18 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016288)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18470
malus_domestica MD03G1241700.v1.1 MD11G1261000.v1.1
prunus_persica Prupe.4G167200_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0031231
rosa_laevigata RLG00000033293
rosa_multiflora Rmu_sc0004014.1_g000008
rosa_roxburghii Rroxscaffold_1G00049050
rosa_rugosa Rorug05G0123000
rosa_samantha Rh5AG216600 Rh5BG216000 Rh5CG239800 Rh5DG221100
rosa_wichuraiana Rw0G010930 Rw5G019810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 314
Acc65I GGTACC 1 cut(s) 209
AccB1I GGYRCC 2 cut(s) 77, 209
AccI GTMKAC 1 cut(s) 219
AciI CCGC 1 cut(s) 81
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 3 cut(s) 116, 211, 442
AfiI CCNNNNNNNGG 1 cut(s) 167
AflII CTTAAG 1 cut(s) 464
Alw26I GTCTC 2 cut(s) 137, 479
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 2 cut(s) 3, 264
ApeKI GCWGC 2 cut(s) 23, 315
ApoI RAATTY 1 cut(s) 278
Asp718I GGTACC 1 cut(s) 209
AspLEI GCGC 2 cut(s) 315, 335
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 28, 313
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 1 cut(s) 306
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 77, 209
BbvI GCAGC 2 cut(s) 35, 327
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 137, 479
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 256
BfrI CTTAAG 1 cut(s) 464
BisI GCNGC 3 cut(s) 24, 81, 316
BlsI GCNGC 3 cut(s) 25, 82, 317
BmcAI AGTACT 1 cut(s) 442
Bme18I GGWCC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 2 cut(s) 79, 211
BmsI GCATC 1 cut(s) 261
BoxI GACNNNNGTC 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 223
BsaJI CCNNGG 6 cut(s) 6, 72, 183, 396, 418, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseDI CCNNGG 6 cut(s) 6, 72, 183, 396, 418, 480
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 299, 497
BseXI GCAGC 2 cut(s) 35, 327
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 2 cut(s) 5, 266
BshNI GGYRCC 2 cut(s) 77, 209
BsiHKCI CYCGRG 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 137, 479
BsnI GGCC 2 cut(s) 5, 266
BsoBI CYCGRG 1 cut(s) 479
Bsp143I GATC 2 cut(s) 325, 493
BspACI CCGC 1 cut(s) 81
BspANI GGCC 2 cut(s) 5, 266
BspCNI CTCAG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 79, 211
BspT107I GGYRCC 2 cut(s) 77, 209
BspTI CTTAAG 1 cut(s) 464
BssECI CCNNGG 6 cut(s) 6, 72, 183, 396, 418, 480
BssMI GATC 2 cut(s) 325, 493
BssNAI GTATAC 1 cut(s) 220
BssT1I CCWWGG 4 cut(s) 6, 183, 396, 418
Bst1107I GTATAC 1 cut(s) 220
Bst4CI ACNGT 4 cut(s) 170, 178, 260, 310
Bst6I CTCTTC 2 cut(s) 35, 101
BstAFI CTTAAG 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 72
BstHHI GCGC 2 cut(s) 315, 335
BstKTI GATC 2 cut(s) 328, 496
BstMAI GTCTC 2 cut(s) 137, 479
BstMBI GATC 2 cut(s) 325, 493
BstMWI GCNNNNNNNGC 2 cut(s) 179, 407
BstPAI GACNNNNGTC 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 256
BstSNI TACGTA 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 35, 327
BstXI CCANNNNNNTGG 1 cut(s) 13
BstZ17I GTATAC 1 cut(s) 220
BsuRI GGCC 2 cut(s) 5, 266
BtgI CCRYGG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 403
CciI TCATGA 1 cut(s) 426
CfoI GCGC 2 cut(s) 315, 335
Cfr13I GGNCC 1 cut(s) 306
Csp6I GTAC 3 cut(s) 115, 210, 441
CviAII CATG 2 cut(s) 126, 427
CviJI RGCY 8 cut(s) 5, 11, 182, 198, 266, 318, 359, 401
CviKI_1 RGCY 8 cut(s) 5, 11, 182, 198, 266, 318, 359, 401
CviQI GTAC 3 cut(s) 115, 210, 441
DdeI CTNAG 1 cut(s) 152
DpnI GATC 2 cut(s) 327, 495
DpnII GATC 2 cut(s) 325, 493
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 35, 101
EarI CTCTTC 2 cut(s) 35, 101
Eco105I TACGTA 1 cut(s) 223
Eco130I CCWWGG 4 cut(s) 6, 183, 396, 418
Eco47I GGWCC 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 479
EcoT14I CCWWGG 4 cut(s) 6, 183, 396, 418
ErhI CCWWGG 4 cut(s) 6, 183, 396, 418
FaeI CATG 2 cut(s) 129, 430
FaiI YATR 5 cut(s) 64, 127, 220, 428, 447
FatI CATG 2 cut(s) 125, 426
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 24, 81, 316
Fsp4HI GCNGC 3 cut(s) 24, 81, 316
FspBI CTAG 1 cut(s) 360
FspI TGCGCA 1 cut(s) 314
GlaI GCGC 2 cut(s) 314, 334
GluI GCNGC 3 cut(s) 24, 81, 316
HaeIII GGCC 2 cut(s) 5, 266
HhaI GCGC 2 cut(s) 315, 335
Hin1II CATG 2 cut(s) 129, 430
Hin6I GCGC 2 cut(s) 313, 333
HinP1I GCGC 2 cut(s) 313, 333
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 1 cut(s) 150
HphI GGTGA 2 cut(s) 28, 313
Hpy166II GTNNAC 4 cut(s) 115, 166, 220, 391
Hpy188III TCNNGA 3 cut(s) 142, 352, 427
Hpy8I GTNNAC 4 cut(s) 115, 166, 220, 391
HpyAV CCTTC 2 cut(s) 224, 427
HpyCH4III ACNGT 4 cut(s) 170, 178, 260, 310
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 407
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 129, 430
HspAI GCGC 2 cut(s) 313, 333
KpnI GGTACC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 325, 493
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 3 cut(s) 58, 100, 248
Lsp1109I GCAGC 2 cut(s) 35, 327
LweI GCATC 1 cut(s) 261
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 222
MalI GATC 2 cut(s) 327, 495
MboI GATC 2 cut(s) 325, 493
MboII GAAGA 2 cut(s) 22, 88
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 137, 278, 470
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 8 cut(s) 97, 277, 277, 292, 297, 348, 448, 475
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 464
MwoI GCNNNNNNNGC 2 cut(s) 179, 407
NdeII GATC 2 cut(s) 325, 493
NlaIII CATG 2 cut(s) 129, 430
NlaIV GGNNCC 2 cut(s) 79, 211
NsbI TGCGCA 1 cut(s) 314
PagI TCATGA 1 cut(s) 426
PkrI GCNGC 3 cut(s) 25, 82, 317
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Ppu21I YACGTR 1 cut(s) 223
PshAI GACNNNNGTC 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 79, 211
PspPI GGNCC 1 cut(s) 306
RsaI GTAC 3 cut(s) 116, 211, 442
RsaNI GTAC 3 cut(s) 115, 210, 441
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 3 cut(s) 24, 81, 316
Sau3AI GATC 2 cut(s) 325, 493
Sau96I GGNCC 1 cut(s) 306
ScaI AGTACT 1 cut(s) 442
SchI GAGTC 1 cut(s) 144
SetI ASST 4 cut(s) 41, 114, 225, 303
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 256
SinI GGWCC 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
SnaBI TACGTA 1 cut(s) 223
Sse9I AATT 3 cut(s) 137, 278, 470
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 360
StyI CCWWGG 4 cut(s) 6, 183, 396, 418
TaaI ACNGT 4 cut(s) 170, 178, 260, 310
TaiI ACGT 1 cut(s) 225
TaqI TCGA 4 cut(s) 141, 228, 345, 351
TaqII GACCGA 1 cut(s) 254
TasI AATT 3 cut(s) 137, 278, 470
TatI WGTACW 2 cut(s) 114, 440
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 335
TseI GCWGC 2 cut(s) 23, 315
TspDTI ATGAA 2 cut(s) 22, 415
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 1 cut(s) 335
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 1 cut(s) 360
ZrmI AGTACT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.