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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G15095 AT3G15095 AT3G15095 |
| fragaria_vesca | FvH4_3g19150 FvH4_3g19150 |
| malus_domestica | MD03G1236100.v1.1 MD11G1256900.v1.1 |
| prunus_persica | Prupe.4G173200_v2.0.a1 Prupe.4G173200_v2.0.a1 Prupe.4G173200_v2.0.a1 |
| pyrus_communis | pycom03g18230 pycom11g22700 |
| rosa_chinensis | RchiOBHm_Chr5g0032241 |
| rosa_laevigata | RLG00000033370 |
| rosa_multiflora | Rmu_sc0018683.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00048220 |
| rosa_rugosa | Rorug05G0129900 |
| rosa_samantha | Rh5AG223800 Rh5BG224500 Rh5CG249800 Rh5DG229100 |
| rosa_wichuraiana | Rw5G020410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 316 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1591 |
| Acc36I | ACCTGC | 1 cut(s) | 316 |
| AccB1I | GGYRCC | 2 cut(s) | 230, 2140 |
| AccBSI | CCGCTC | 4 cut(s) | 399, 651, 705, 2200 |
| AccI | GTMKAC | 3 cut(s) | 14, 1932, 2072 |
| AccII | CGCG | 5 cut(s) | 1921, 1946, 1955, 1961, 2101 |
| AclWI | GGATC | 4 cut(s) | 977, 1338, 1403, 1734 |
| AcoI | YGGCCR | 2 cut(s) | 1956, 2040 |
| AcsI | RAATTY | 1 cut(s) | 1700 |
| AcuI | CTGAAG | 2 cut(s) | 64, 1443 |
| AcyI | GRCGYC | 3 cut(s) | 231, 2129, 2141 |
| AfaI | GTAC | 3 cut(s) | 1494, 1518, 1639 |
| AfeI | AGCGCT | 2 cut(s) | 480, 591 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 254, 442, 559, 2223 |
| AflIII | ACRYGT | 1 cut(s) | 314 |
| AgsI | TTSAA | 6 cut(s) | 476, 1085, 1106, 1157, 1234, 1430 |
| AjiI | CACGTC | 2 cut(s) | 315, 1873 |
| Alw21I | GWGCWC | 2 cut(s) | 69, 2097 |
| Alw26I | GTCTC | 5 cut(s) | 16, 150, 1655, 1817, 1819 |
| AlwI | GGATC | 4 cut(s) | 977, 1338, 1403, 1734 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2062 |
| Ama87I | CYCGRG | 2 cut(s) | 153, 2191 |
| Aor51HI | AGCGCT | 2 cut(s) | 480, 591 |
| AoxI | GGCC | 3 cut(s) | 1716, 1956, 2040 |
| ApoI | RAATTY | 1 cut(s) | 1700 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 623, 655 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 471 |
| AspLEI | GCGC | 9 cut(s) | 233, 481, 592, 958, 1003, 1710, 1869, 2103, 2143 |
| AspS9I | GGNCC | 3 cut(s) | 1717, 2027, 2195 |
| AsuC2I | CCSGG | 6 cut(s) | 144, 290, 1757, 1862, 2192, 2193 |
| AsuHPI | GGTGA | 5 cut(s) | 322, 340, 346, 1000, 1594 |
| AvaI | CYCGRG | 2 cut(s) | 153, 2191 |
| AvaII | GGWCC | 2 cut(s) | 2027, 2195 |
| BanI | GGYRCC | 2 cut(s) | 230, 2140 |
| BanII | GRGCYC | 1 cut(s) | 69 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1482, 1514 |
| BauI | CACGAG | 1 cut(s) | 58 |
| BbsI | GAAGAC | 3 cut(s) | 344, 1164, 1653 |
| Bbv12I | GWGCWC | 2 cut(s) | 69, 2097 |
| BbvCI | CCTCAGC | 1 cut(s) | 593 |
| BccI | CCATC | 4 cut(s) | 36, 743, 988, 2032 |
| BceAI | ACGGC | 3 cut(s) | 1623, 1909, 2071 |
| BcnI | CCSGG | 6 cut(s) | 144, 290, 1757, 1862, 2192, 2193 |
| BcoDI | GTCTC | 5 cut(s) | 16, 150, 1655, 1817, 1819 |
| BfaI | CTAG | 3 cut(s) | 42, 1391, 1686 |
| BfmI | CTRYAG | 2 cut(s) | 1730, 1834 |
| BfoI | RGCGCY | 7 cut(s) | 234, 482, 593, 1004, 1711, 1870, 2144 |
| BfuAI | ACCTGC | 1 cut(s) | 316 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1964 |
| BglII | AGATCT | 1 cut(s) | 977 |
| BlpI | GCTNAGC | 1 cut(s) | 1968 |
| BmcAI | AGTACT | 2 cut(s) | 1518, 1639 |
| Bme1390I | CCNGG | 6 cut(s) | 144, 290, 1757, 1862, 2192, 2193 |
| Bme18I | GGWCC | 2 cut(s) | 2027, 2195 |
| BmeT110I | CYCGRG | 2 cut(s) | 153, 2191 |
| BmgBI | CACGTC | 2 cut(s) | 315, 1873 |
| BmgT120I | GGNCC | 3 cut(s) | 1717, 2027, 2195 |
| BmiI | GGNNCC | 8 cut(s) | 55, 232, 294, 421, 2115, 2142, 2178, 2196 |
| BmrFI | CCNGG | 6 cut(s) | 144, 290, 1757, 1862, 2192, 2193 |
| BmrI | ACTGGG | 1 cut(s) | 2085 |
| BmsI | GCATC | 6 cut(s) | 228, 505, 574, 1110, 1844, 2191 |
| BmuI | ACTGGG | 1 cut(s) | 2085 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1829, 2219 |
| BpiI | GAAGAC | 3 cut(s) | 344, 1164, 1653 |
| Bpu10I | CCTNAGC | 1 cut(s) | 593 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1968 |
| BpuMI | CCSGG | 6 cut(s) | 144, 290, 1757, 1862, 2192, 2193 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1329 |
| BsaHI | GRCGYC | 3 cut(s) | 231, 2129, 2141 |
| BsaI | GGTCTC | 3 cut(s) | 16, 150, 1819 |
| BsaWI | WCCGGW | 4 cut(s) | 985, 1765, 2029, 2216 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 396, 426, 692, 722, 767, 797, 826, 856 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 254, 442, 559, 2223 |
| Bse118I | RCCGGY | 1 cut(s) | 1027 |
| Bse1I | ACTGG | 3 cut(s) | 1524, 1533, 2080 |
| Bse3DI | GCAATG | 1 cut(s) | 1365 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1329 |
| BseGI | GGATG | 6 cut(s) | 372, 496, 754, 1078, 1848, 1906 |
| BseJI | GATNNNNATC | 1 cut(s) | 1329 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 254, 442, 559, 2223 |
| BseMI | GCAATG | 1 cut(s) | 1365 |
| BseMII | CTCAG | 5 cut(s) | 151, 205, 217, 584, 1982 |
| BseNI | ACTGG | 3 cut(s) | 1524, 1533, 2080 |
| BseRI | GAGGAG | 9 cut(s) | 112, 686, 689, 702, 784, 815, 862, 1490, 1604 |
| BseX3I | CGGCCG | 1 cut(s) | 1956 |
| BseYI | CCCAGC | 1 cut(s) | 1373 |
| BsgI | GTGCAG | 1 cut(s) | 1017 |
| Bsh1236I | CGCG | 5 cut(s) | 1921, 1946, 1955, 1961, 2101 |
| Bsh1285I | CGRYCG | 3 cut(s) | 148, 1959, 2217 |
| BshFI | GGCC | 3 cut(s) | 1718, 1958, 2042 |
| BshNI | GGYRCC | 2 cut(s) | 230, 2140 |
| BsiEI | CGRYCG | 3 cut(s) | 148, 1959, 2217 |
| BsiHKAI | GWGCWC | 2 cut(s) | 69, 2097 |
| BsiHKCI | CYCGRG | 2 cut(s) | 153, 2191 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 254, 442, 559, 2223 |
| BsmAI | GTCTC | 5 cut(s) | 16, 150, 1655, 1817, 1819 |
| BsmI | GAATGC | 2 cut(s) | 958, 1240 |
| BsnI | GGCC | 3 cut(s) | 1718, 1958, 2042 |
| Bso31I | GGTCTC | 3 cut(s) | 16, 150, 1819 |
| BsoBI | CYCGRG | 2 cut(s) | 153, 2191 |
| Bsp1286I | GDGCHC | 2 cut(s) | 69, 2097 |
| Bsp143I | GATC | 7 cut(s) | 380, 695, 977, 982, 1330, 1408, 1726 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1968 |
| Bsp19I | CCATGG | 1 cut(s) | 1806 |
| BspANI | GGCC | 3 cut(s) | 1718, 1958, 2042 |
| BspCNI | CTCAG | 5 cut(s) | 150, 204, 216, 585, 1981 |
| BspFNI | CGCG | 5 cut(s) | 1921, 1946, 1955, 1961, 2101 |
| BspHI | TCATGA | 1 cut(s) | 966 |
| BspLI | GGNNCC | 8 cut(s) | 55, 232, 294, 421, 2115, 2142, 2178, 2196 |
| BspMAI | CTGCAG | 2 cut(s) | 1734, 1838 |
| BspMI | ACCTGC | 1 cut(s) | 316 |
| BspPI | GGATC | 4 cut(s) | 977, 1338, 1403, 1734 |
| BspQI | GCTCTTC | 2 cut(s) | 74, 1059 |
| BspT107I | GGYRCC | 2 cut(s) | 230, 2140 |
| BspTNI | GGTCTC | 3 cut(s) | 16, 150, 1819 |
| BsrBI | CCGCTC | 4 cut(s) | 399, 651, 705, 2200 |
| BsrDI | GCAATG | 1 cut(s) | 1365 |
| BsrFI | RCCGGY | 1 cut(s) | 1027 |
| BsrI | ACTGG | 3 cut(s) | 1524, 1533, 2080 |
| BssAI | RCCGGY | 1 cut(s) | 1027 |
| BssMI | GATC | 7 cut(s) | 380, 695, 977, 982, 1330, 1408, 1726 |
| BssNI | GRCGYC | 3 cut(s) | 231, 2129, 2141 |
| BssSI | CACGAG | 1 cut(s) | 58 |
| BssT1I | CCWWGG | 3 cut(s) | 306, 1806, 1818 |
| Bst2BI | CACGAG | 1 cut(s) | 58 |
| Bst4CI | ACNGT | 3 cut(s) | 1675, 1743, 1772 |
| BstACI | GRCGYC | 3 cut(s) | 231, 2129, 2141 |
| BstC8I | GCNNGC | 7 cut(s) | 65, 530, 1029, 1793, 2023, 2139, 2152 |
| BstDEI | CTNAG | 6 cut(s) | 137, 191, 203, 593, 1968, 2133 |
| BstDSI | CCRYGG | 4 cut(s) | 1806, 1919, 1953, 1959 |
| BstEII | GGTNACC | 1 cut(s) | 1131 |
| BstF5I | GGATG | 6 cut(s) | 372, 496, 754, 1078, 1848, 1906 |
| BstFNI | CGCG | 5 cut(s) | 1921, 1946, 1955, 1961, 2101 |
| BstH2I | RGCGCY | 7 cut(s) | 234, 482, 593, 1004, 1711, 1870, 2144 |
| BstHHI | GCGC | 9 cut(s) | 233, 481, 592, 958, 1003, 1710, 1869, 2103, 2143 |
| BstKTI | GATC | 7 cut(s) | 383, 698, 980, 985, 1333, 1411, 1729 |
| BstMAI | GTCTC | 5 cut(s) | 16, 150, 1655, 1817, 1819 |
| BstMBI | GATC | 7 cut(s) | 380, 695, 977, 982, 1330, 1408, 1726 |
| BstMCI | CGRYCG | 3 cut(s) | 148, 1959, 2217 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1829, 2219 |
| BstPI | GGTNACC | 1 cut(s) | 1131 |
| BstSCI | CCNGG | 6 cut(s) | 142, 288, 1755, 1860, 2190, 2191 |
| BstSFI | CTRYAG | 2 cut(s) | 1730, 1834 |
| BstUI | CGCG | 5 cut(s) | 1921, 1946, 1955, 1961, 2101 |
| BstV2I | GAAGAC | 3 cut(s) | 344, 1164, 1653 |
| BstX2I | RGATCY | 3 cut(s) | 977, 1408, 1726 |
| BstYI | RGATCY | 3 cut(s) | 977, 1408, 1726 |
| BstZI | CGGCCG | 1 cut(s) | 1956 |
| BsuRI | GGCC | 3 cut(s) | 1718, 1958, 2042 |
| BtgI | CCRYGG | 4 cut(s) | 1806, 1919, 1953, 1959 |
| BtgZI | GCGATG | 2 cut(s) | 14, 2168 |
| BtrI | CACGTC | 2 cut(s) | 315, 1873 |
| BtsCI | GGATG | 6 cut(s) | 372, 496, 754, 1078, 1848, 1906 |
| BtsIMutI | CAGTG | 1 cut(s) | 1680 |
| BveI | ACCTGC | 1 cut(s) | 316 |
| Cac8I | GCNNGC | 7 cut(s) | 65, 530, 1029, 1793, 2023, 2139, 2152 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2062 |
| CciI | TCATGA | 1 cut(s) | 966 |
| CciNI | GCGGCCGC | 1 cut(s) | 1956 |
| CfoI | GCGC | 9 cut(s) | 233, 481, 592, 958, 1003, 1710, 1869, 2103, 2143 |
| Cfr10I | RCCGGY | 1 cut(s) | 1027 |
| Cfr13I | GGNCC | 3 cut(s) | 1717, 2027, 2195 |
| Cfr42I | CCGCGG | 3 cut(s) | 1922, 1956, 1962 |
| Cfr9I | CCCGGG | 1 cut(s) | 2191 |
| CpoI | CGGWCCG | 1 cut(s) | 2027 |
| CseI | GACGC | 2 cut(s) | 502, 2118 |
| Csp6I | GTAC | 3 cut(s) | 1493, 1517, 1638 |
| CspI | CGGWCCG | 1 cut(s) | 2027 |
| CviAII | CATG | 3 cut(s) | 464, 967, 1807 |
| CviQI | GTAC | 3 cut(s) | 1493, 1517, 1638 |
| DdeI | CTNAG | 6 cut(s) | 137, 191, 203, 593, 1968, 2133 |
| DinI | GGCGCC | 2 cut(s) | 232, 2142 |
| DpnI | GATC | 7 cut(s) | 382, 697, 979, 984, 1332, 1410, 1728 |
| DpnII | GATC | 7 cut(s) | 380, 695, 977, 982, 1330, 1408, 1726 |
| DraI | TTTAAA | 1 cut(s) | 877 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1591 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1591 |
| EaeI | YGGCCR | 2 cut(s) | 1956, 2040 |
| EagI | CGGCCG | 1 cut(s) | 1956 |
| EciI | GGCGGA | 3 cut(s) | 417, 933, 1625 |
| Ecl136II | GAGCTC | 1 cut(s) | 67 |
| EclXI | CGGCCG | 1 cut(s) | 1956 |
| Eco130I | CCWWGG | 3 cut(s) | 306, 1806, 1818 |
| Eco24I | GRGCYC | 1 cut(s) | 69 |
| Eco31I | GGTCTC | 3 cut(s) | 16, 150, 1819 |
| Eco47I | GGWCC | 2 cut(s) | 2027, 2195 |
| Eco47III | AGCGCT | 2 cut(s) | 480, 591 |
| Eco52I | CGGCCG | 1 cut(s) | 1956 |
| Eco53kI | GAGCTC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 2 cut(s) | 64, 1443 |
| Eco88I | CYCGRG | 2 cut(s) | 153, 2191 |
| Eco91I | GGTNACC | 1 cut(s) | 1131 |
| EcoICRI | GAGCTC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 1131 |
| EcoRI | GAATTC | 1 cut(s) | 1700 |
| EcoT14I | CCWWGG | 3 cut(s) | 306, 1806, 1818 |
| EcoT38I | GRGCYC | 1 cut(s) | 69 |
| EgeI | GGCGCC | 2 cut(s) | 232, 2142 |
| EheI | GGCGCC | 2 cut(s) | 232, 2142 |
| ErhI | CCWWGG | 3 cut(s) | 306, 1806, 1818 |
| FaeI | CATG | 3 cut(s) | 467, 970, 1810 |
| FatI | CATG | 3 cut(s) | 463, 966, 1806 |
| FauI | CCCGC | 7 cut(s) | 206, 269, 698, 704, 1914, 1960, 2014 |
| FblI | GTMKAC | 3 cut(s) | 14, 1932, 2072 |
| FokI | GGATG | 6 cut(s) | 379, 483, 761, 1085, 1835, 1913 |
| FriOI | GRGCYC | 1 cut(s) | 69 |
| FspBI | CTAG | 3 cut(s) | 42, 1391, 1686 |
| GlaI | GCGC | 9 cut(s) | 232, 480, 591, 957, 1002, 1709, 1868, 2102, 2142 |
| GsaI | CCCAGC | 1 cut(s) | 1377 |
| HaeII | RGCGCY | 7 cut(s) | 234, 482, 593, 1004, 1711, 1870, 2144 |
| HaeIII | GGCC | 3 cut(s) | 1718, 1958, 2042 |
| HgaI | GACGC | 2 cut(s) | 502, 2118 |
| HhaI | GCGC | 9 cut(s) | 233, 481, 592, 958, 1003, 1710, 1869, 2103, 2143 |
| Hin1I | GRCGYC | 3 cut(s) | 231, 2129, 2141 |
| Hin1II | CATG | 3 cut(s) | 467, 970, 1810 |
| Hin6I | GCGC | 9 cut(s) | 231, 479, 590, 956, 1001, 1708, 1867, 2101, 2141 |
| HinP1I | GCGC | 9 cut(s) | 231, 479, 590, 956, 1001, 1708, 1867, 2101, 2141 |
| HincII | GTYRAC | 4 cut(s) | 15, 457, 1596, 1605 |
| HindII | GTYRAC | 4 cut(s) | 15, 457, 1596, 1605 |
| HindIII | AAGCTT | 1 cut(s) | 1148 |
| HpaI | GTTAAC | 1 cut(s) | 457 |
| HphI | GGTGA | 5 cut(s) | 322, 340, 346, 1000, 1594 |
| Hpy166II | GTNNAC | 6 cut(s) | 15, 457, 1596, 1605, 1933, 2073 |
| Hpy188III | TCNNGA | 8 cut(s) | 155, 967, 1082, 1316, 1334, 1412, 1463, 1629 |
| Hpy8I | GTNNAC | 6 cut(s) | 15, 457, 1596, 1605, 1933, 2073 |
| Hpy99I | CGWCG | 2 cut(s) | 496, 643 |
| HpyAV | CCTTC | 8 cut(s) | 306, 661, 914, 1070, 1157, 1610, 1615, 1708 |
| HpyCH4III | ACNGT | 3 cut(s) | 1675, 1743, 1772 |
| HpyCH4IV | ACGT | 2 cut(s) | 314, 1872 |
| HpyCH4V | TGCA | 6 cut(s) | 565, 1034, 1123, 1732, 1836, 2106 |
| HpyF3I | CTNAG | 6 cut(s) | 137, 191, 203, 593, 1968, 2133 |
| HpySE526I | ACGT | 2 cut(s) | 314, 1872 |
| Hsp92I | GRCGYC | 3 cut(s) | 231, 2129, 2141 |
| Hsp92II | CATG | 3 cut(s) | 467, 970, 1810 |
| HspAI | GCGC | 9 cut(s) | 231, 479, 590, 956, 1001, 1708, 1867, 2101, 2141 |
| KasI | GGCGCC | 2 cut(s) | 230, 2140 |
| KroI | GCCGGC | 1 cut(s) | 1027 |
| KroNI | GCCGGC | 1 cut(s) | 1029 |
| KspAI | GTTAAC | 1 cut(s) | 457 |
| KspI | CCGCGG | 3 cut(s) | 1922, 1956, 1962 |
| Kzo9I | GATC | 7 cut(s) | 380, 695, 977, 982, 1330, 1408, 1726 |
| LguI | GCTCTTC | 2 cut(s) | 74, 1059 |
| LweI | GCATC | 6 cut(s) | 228, 505, 574, 1110, 1844, 2191 |
| MaeI | CTAG | 3 cut(s) | 42, 1391, 1686 |
| MaeII | ACGT | 2 cut(s) | 314, 1872 |
| MaeIII | GTNAC | 6 cut(s) | 310, 1131, 1440, 1582, 1669, 1675 |
| MalI | GATC | 7 cut(s) | 382, 697, 979, 984, 1332, 1410, 1728 |
| MbiI | CCGCTC | 4 cut(s) | 399, 651, 705, 2200 |
| MboI | GATC | 7 cut(s) | 380, 695, 977, 982, 1330, 1408, 1726 |
| MfeI | CAATTG | 1 cut(s) | 1445 |
| MflI | RGATCY | 3 cut(s) | 977, 1408, 1726 |
| MhlI | GDGCHC | 2 cut(s) | 69, 2097 |
| MluCI | AATT | 6 cut(s) | 1125, 1229, 1286, 1434, 1445, 1700 |
| Mly113I | GGCGCC | 2 cut(s) | 231, 2141 |
| MmeI | TCCRAC | 3 cut(s) | 515, 588, 2091 |
| MroNI | GCCGGC | 1 cut(s) | 1027 |
| MroXI | GAANNNNTTC | 1 cut(s) | 471 |
| MseI | TTAA | 4 cut(s) | 456, 615, 876, 2230 |
| MspA1I | CMGCKG | 5 cut(s) | 51, 213, 1921, 1955, 1961 |
| MspR9I | CCNGG | 6 cut(s) | 144, 290, 1757, 1862, 2192, 2193 |
| MunI | CAATTG | 1 cut(s) | 1445 |
| Mva1269I | GAATGC | 2 cut(s) | 958, 1240 |
| MvnI | CGCG | 5 cut(s) | 1921, 1946, 1955, 1961, 2101 |
| NaeI | GCCGGC | 1 cut(s) | 1029 |
| NarI | GGCGCC | 2 cut(s) | 231, 2141 |
| NciI | CCSGG | 6 cut(s) | 144, 290, 1757, 1862, 2192, 2193 |
| NcoI | CCATGG | 1 cut(s) | 1806 |
| NdeII | GATC | 7 cut(s) | 380, 695, 977, 982, 1330, 1408, 1726 |
| NgoMIV | GCCGGC | 1 cut(s) | 1027 |
| NlaIII | CATG | 3 cut(s) | 467, 970, 1810 |
| NlaIV | GGNNCC | 8 cut(s) | 55, 232, 294, 421, 2115, 2142, 2178, 2196 |
| NmeAIII | GCCGAG | 3 cut(s) | 448, 2016, 2068 |
| NmuCI | GTSAC | 4 cut(s) | 310, 1582, 1669, 1675 |
| NotI | GCGGCCGC | 1 cut(s) | 1956 |
| PaeR7I | CTCGAG | 1 cut(s) | 153 |
| PagI | TCATGA | 1 cut(s) | 966 |
| PaqCI | CACCTGC | 1 cut(s) | 316 |
| PciSI | GCTCTTC | 2 cut(s) | 74, 1059 |
| PctI | GAATGC | 2 cut(s) | 958, 1240 |
| PdiI | GCCGGC | 1 cut(s) | 1029 |
| PdmI | GAANNNNTTC | 1 cut(s) | 471 |
| PfeI | GAWTC | 2 cut(s) | 1009, 1325 |
| PfoI | TCCNGGA | 1 cut(s) | 1860 |
| PluTI | GGCGCC | 2 cut(s) | 234, 2144 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1829, 2219 |
| Psp124BI | GAGCTC | 1 cut(s) | 69 |
| PspEI | GGTNACC | 1 cut(s) | 1131 |
| PspFI | CCCAGC | 1 cut(s) | 1373 |
| PspN4I | GGNNCC | 8 cut(s) | 55, 232, 294, 421, 2115, 2142, 2178, 2196 |
| PspPI | GGNCC | 3 cut(s) | 1717, 2027, 2195 |
| PstI | CTGCAG | 2 cut(s) | 1734, 1838 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2062 |
| PsuI | RGATCY | 3 cut(s) | 977, 1408, 1726 |
| RsaI | GTAC | 3 cut(s) | 1494, 1518, 1639 |
| RsaNI | GTAC | 3 cut(s) | 1493, 1517, 1638 |
| Rsr2I | CGGWCCG | 1 cut(s) | 2027 |
| RsrII | CGGWCCG | 1 cut(s) | 2027 |
| SacI | GAGCTC | 1 cut(s) | 69 |
| SacII | CCGCGG | 3 cut(s) | 1922, 1956, 1962 |
| SalI | GTCGAC | 1 cut(s) | 13 |
| SapI | GCTCTTC | 2 cut(s) | 74, 1059 |
| SaqAI | TTAA | 4 cut(s) | 456, 615, 876, 2230 |
| Sau3AI | GATC | 7 cut(s) | 380, 695, 977, 982, 1330, 1408, 1726 |
| Sau96I | GGNCC | 3 cut(s) | 1717, 2027, 2195 |
| ScaI | AGTACT | 2 cut(s) | 1518, 1639 |
| ScrFI | CCNGG | 6 cut(s) | 144, 290, 1757, 1862, 2192, 2193 |
| SduI | GDGCHC | 2 cut(s) | 69, 2097 |
| SfaNI | GCATC | 6 cut(s) | 228, 505, 574, 1110, 1844, 2191 |
| SfcI | CTRYAG | 2 cut(s) | 1730, 1834 |
| SfoI | GGCGCC | 2 cut(s) | 232, 2142 |
| Sfr274I | CTCGAG | 1 cut(s) | 153 |
| Sfr303I | CCGCGG | 3 cut(s) | 1922, 1956, 1962 |
| SgrBI | CCGCGG | 3 cut(s) | 1922, 1956, 1962 |
| SinI | GGWCC | 2 cut(s) | 2027, 2195 |
| SlaI | CTCGAG | 1 cut(s) | 153 |
| SmaI | CCCGGG | 1 cut(s) | 2193 |
| SmlI | CTYRAG | 1 cut(s) | 153 |
| SmoI | CTYRAG | 1 cut(s) | 153 |
| Sse9I | AATT | 6 cut(s) | 1125, 1229, 1286, 1434, 1445, 1700 |
| SspDI | GGCGCC | 2 cut(s) | 230, 2140 |
| SspMI | CTAG | 3 cut(s) | 42, 1391, 1686 |
| SstI | GAGCTC | 1 cut(s) | 69 |
| StyD4I | CCNGG | 6 cut(s) | 142, 288, 1755, 1860, 2190, 2191 |
| StyI | CCWWGG | 3 cut(s) | 306, 1806, 1818 |
| TaaI | ACNGT | 3 cut(s) | 1675, 1743, 1772 |
| TaiI | ACGT | 2 cut(s) | 317, 1875 |
| TaqI | TCGA | 8 cut(s) | 14, 148, 154, 383, 861, 1333, 1704, 2036 |
| TasI | AATT | 6 cut(s) | 1125, 1229, 1286, 1434, 1445, 1700 |
| TatI | WGTACW | 3 cut(s) | 1492, 1516, 1637 |
| TfiI | GAWTC | 2 cut(s) | 1009, 1325 |
| Tru1I | TTAA | 4 cut(s) | 456, 615, 876, 2230 |
| Tru9I | TTAA | 4 cut(s) | 456, 615, 876, 2230 |
| TscAI | CASTG | 1 cut(s) | 1680 |
| TseFI | GTSAC | 4 cut(s) | 310, 1582, 1669, 1675 |
| Tsp45I | GTSAC | 4 cut(s) | 310, 1582, 1669, 1675 |
| TspGWI | ACGGA | 3 cut(s) | 833, 1739, 1856 |
| TspMI | CCCGGG | 1 cut(s) | 2191 |
| TspRI | CASTG | 1 cut(s) | 1680 |
| VpaK11BI | GGWCC | 2 cut(s) | 2027, 2195 |
| XapI | RAATTY | 1 cut(s) | 1700 |
| XhoI | CTCGAG | 1 cut(s) | 153 |
| XmaI | CCCGGG | 1 cut(s) | 2191 |
| XmiI | GTMKAC | 3 cut(s) | 14, 1932, 2072 |
| XmnI | GAANNNNTTC | 1 cut(s) | 471 |
| XspI | CTAG | 3 cut(s) | 42, 1391, 1686 |
| ZrmI | AGTACT | 2 cut(s) | 1518, 1639 |