Rorug05G0129900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009342
Physical Location & Seq
Forward (+)
11555218 .. 11556531
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0129900.1

Sequence Viewer

Length: 771 bp
ATGGCCTTCACCTCTTCCCGGAATTATCTGGCCCGTTCCGGCTTCCGTATCCTGTTTCAGAGGACACAGTTCCAAAGGACCCCGTTTGTTCGTTCTTTTTGGCAGAAGAACAAAGGACATATGCAAAGAGGTAGAACTGCAAGTCTAAAAGGGCAAATCGAAAACCTCAAGGTCCGTGGATTCTGTGCGGAGAGACGAAAGGATGGCAACCAGCCTAGAGGACATCGCACTATAGTCATGGATCCGCCTTTTTATAAAAAGCTGAAAATTATGGGGGATCAAGAACAGATTTTGAGTATACTGACGGAGCTTTATATCATATCCGAAGTGAAGTTAACTCTTGCCACAAAGGGTTTGTTTTCTTGCTTGTACGAACATGGAGTAGAAGACACATGGAGAGCATTTGTTGAGACTATGAAAGGGAGAGCTAATACTTCCTCCGATTCTTACTTGAAACGGGAACTCGAGAAAATGGAGAAATGGTTGGACAATGTAGAGCCTTTGGCAAAAGAAATATATCAGGTGCTGGTTGTTCGTCACGAACAGAAAGTCTCTAAGCCTCGAGGAGAATATCATTTTGAAATTCTTCCCAACAGTTTTGGTTCAATTCTGATTAAGCTCTCAAAGCTTAGGTTGAAATGGAAAGCTATTGCATCCTTGGAGCATGGAAACTTGTTGGATGAATTAGACAAGCGAGAACTTGATTATGTAGAGACTTTGATCAAGGAAGTACACAACTTTGTGGTCGTTCAGCAAGTATTGCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

30.05

Weight (kDa)

9.63

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 255
AbsI CCTCGAGG 1 cut(s) 561
AccI GTMKAC 1 cut(s) 298
AciI CCGC 2 cut(s) 188, 245
AclWI GGATC 3 cut(s) 236, 249, 285
AcsI RAATTY 1 cut(s) 582
AfaI GTAC 2 cut(s) 371, 732
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 4 cut(s) 454, 581, 606, 637
AluBI AGCT 6 cut(s) 262, 310, 428, 619, 628, 647
AluI AGCT 6 cut(s) 262, 310, 428, 619, 628, 647
Alw26I GTCTC 4 cut(s) 187, 404, 556, 707
AlwI GGATC 3 cut(s) 236, 249, 285
AlwNI CAGNNNCTG 1 cut(s) 526
Ama87I CYCGRG 2 cut(s) 464, 561
AoxI GGCC 2 cut(s) 3, 30
ApoI RAATTY 1 cut(s) 582
ArsI GACNNNNNNTTYG 2 cut(s) 534, 566
Asp700I GAANNNNTTC 1 cut(s) 585
AspS9I GGNCC 3 cut(s) 31, 78, 172
AsuC2I CCSGG 1 cut(s) 19
AvaI CYCGRG 2 cut(s) 464, 561
AvaII GGWCC 2 cut(s) 78, 172
BamHI GGATCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 393
BccI CCATC 1 cut(s) 197
BciVI GTATCC 1 cut(s) 59
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 4 cut(s) 187, 404, 556, 707
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 231
BfuI GTATCC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 19
Bme18I GGWCC 2 cut(s) 78, 172
BmeT110I CYCGRG 2 cut(s) 464, 561
BmgT120I GGNCC 3 cut(s) 31, 78, 172
BmiI GGNNCC 2 cut(s) 80, 243
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 662
BpiI GAAGAC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 175, 657
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 175, 657
BseGI GGATG 3 cut(s) 208, 653, 685
BseLI CCNNNNNNNGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 579
BshFI GGCC 2 cut(s) 5, 32
BsiHKCI CYCGRG 2 cut(s) 464, 561
BsiSI CCGG 2 cut(s) 19, 39
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 4 cut(s) 187, 404, 556, 707
BsmBI CGTCTC 1 cut(s) 187
BsnI GGCC 2 cut(s) 5, 32
BsoBI CYCGRG 2 cut(s) 464, 561
Bsp143I GATC 3 cut(s) 241, 277, 720
BspACI CCGC 2 cut(s) 188, 245
BspANI GGCC 2 cut(s) 5, 32
BspLI GGNNCC 2 cut(s) 80, 243
BspPI GGATC 3 cut(s) 236, 249, 285
BssECI CCNNGG 2 cut(s) 175, 657
BssMI GATC 3 cut(s) 241, 277, 720
BssNAI GTATAC 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 657
Bst1107I GTATAC 1 cut(s) 299
Bst4CI ACNGT 2 cut(s) 69, 596
Bst6I CTCTTC 1 cut(s) 19
BstAPI GCANNNNNTGC 1 cut(s) 760
BstDEI CTNAG 2 cut(s) 555, 629
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 3 cut(s) 208, 653, 685
BstKTI GATC 3 cut(s) 244, 280, 723
BstMAI GTCTC 4 cut(s) 187, 404, 556, 707
BstMBI GATC 3 cut(s) 241, 277, 720
BstMWI GCNNNNNNNGC 2 cut(s) 625, 760
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BstZ17I GTATAC 1 cut(s) 299
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 2 cut(s) 5, 32
BtgI CCRYGG 1 cut(s) 175
BtgZI GCGATG 1 cut(s) 209
BtsCI GGATG 3 cut(s) 208, 653, 685
CaiI CAGNNNCTG 1 cut(s) 526
Cfr13I GGNCC 3 cut(s) 31, 78, 172
Csp6I GTAC 2 cut(s) 370, 731
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 4 cut(s) 238, 377, 393, 665
CviQI GTAC 2 cut(s) 370, 731
DdeI CTNAG 2 cut(s) 555, 629
DpnI GATC 3 cut(s) 243, 279, 722
DpnII GATC 3 cut(s) 241, 277, 720
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 657
Eco47I GGWCC 2 cut(s) 78, 172
Eco88I CYCGRG 2 cut(s) 464, 561
EcoO109I RGGNCCY 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 4 cut(s) 241, 380, 396, 668
FatI CATG 4 cut(s) 237, 376, 392, 664
FauNDI CATATG 1 cut(s) 120
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 298
FokI GGATG 3 cut(s) 215, 640, 692
FspBI CTAG 1 cut(s) 216
HaeIII GGCC 2 cut(s) 5, 32
HapII CCGG 2 cut(s) 19, 39
Hin1II CATG 4 cut(s) 241, 380, 396, 668
HincII GTYRAC 1 cut(s) 336
HindII GTYRAC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 2 cut(s) 180, 443
HpaI GTTAAC 1 cut(s) 336
HpaII CCGG 2 cut(s) 19, 39
Hpy166II GTNNAC 3 cut(s) 299, 336, 733
Hpy188I TCNGA 4 cut(s) 60, 325, 442, 612
Hpy188III TCNNGA 3 cut(s) 281, 466, 539
Hpy8I GTNNAC 3 cut(s) 299, 336, 733
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 69, 596
HpyCH4V TGCA 4 cut(s) 124, 140, 653, 763
HpyF10VI GCNNNNNNNGC 2 cut(s) 625, 760
HpyF3I CTNAG 2 cut(s) 555, 629
Hsp92II CATG 4 cut(s) 241, 380, 396, 668
Ksp22I TGATCA 1 cut(s) 720
KspAI GTTAAC 1 cut(s) 336
Kzo9I GATC 3 cut(s) 241, 277, 720
LmnI GCTCC 2 cut(s) 307, 661
LpnPI CCDG 7 cut(s) 14, 32, 52, 65, 224, 506, 512
LweI GCATC 1 cut(s) 662
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 536
MalI GATC 3 cut(s) 243, 279, 722
MboI GATC 3 cut(s) 241, 277, 720
MboII GAAGA 4 cut(s) 6, 118, 398, 578
MflI RGATCY 1 cut(s) 241
MluCI AATT 5 cut(s) 22, 267, 582, 606, 683
MmeI TCCRAC 2 cut(s) 465, 657
MnlI CCTC 8 cut(s) 22, 54, 122, 176, 212, 448, 557, 570
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 335, 615
MspI CCGG 2 cut(s) 19, 39
MspR9I CCNGG 1 cut(s) 19
MwoI GCNNNNNNNGC 2 cut(s) 625, 760
NciI CCSGG 1 cut(s) 19
NdeI CATATG 1 cut(s) 120
NdeII GATC 3 cut(s) 241, 277, 720
NlaIII CATG 4 cut(s) 241, 380, 396, 668
NlaIV GGNNCC 2 cut(s) 80, 243
NmuCI GTSAC 1 cut(s) 536
PaeR7I CTCGAG 2 cut(s) 464, 561
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 2 cut(s) 180, 443
PfoI TCCNGGA 1 cut(s) 17
PpuMI RGGWCCY 1 cut(s) 78
PsiI TTATAA 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 80, 243
PspPI GGNCC 3 cut(s) 31, 78, 172
PspPPI RGGWCCY 1 cut(s) 78
PspXI VCTCGAGB 1 cut(s) 561
PstNI CAGNNNCTG 1 cut(s) 526
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 2 cut(s) 371, 732
RsaNI GTAC 2 cut(s) 370, 731
SaqAI TTAA 2 cut(s) 335, 615
Sau3AI GATC 3 cut(s) 241, 277, 720
Sau96I GGNCC 3 cut(s) 31, 78, 172
ScrFI CCNGG 1 cut(s) 19
SfaNI GCATC 1 cut(s) 662
SfcI CTRYAG 1 cut(s) 231
Sfr274I CTCGAG 2 cut(s) 464, 561
SinI GGWCC 2 cut(s) 78, 172
SlaI CTCGAG 2 cut(s) 464, 561
SmlI CTYRAG 3 cut(s) 167, 464, 561
SmoI CTYRAG 3 cut(s) 167, 464, 561
Sse9I AATT 5 cut(s) 22, 267, 582, 606, 683
SsiI CCGC 2 cut(s) 188, 245
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 17
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 2 cut(s) 69, 596
TaqI TCGA 3 cut(s) 159, 465, 562
TasI AATT 5 cut(s) 22, 267, 582, 606, 683
TatI WGTACW 1 cut(s) 730
TfiI GAWTC 2 cut(s) 180, 443
Tru1I TTAA 2 cut(s) 335, 615
Tru9I TTAA 2 cut(s) 335, 615
TseFI GTSAC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 2 cut(s) 431, 696
TspGWI ACGGA 3 cut(s) 35, 164, 320
VpaK11BI GGWCC 2 cut(s) 78, 172
XapI RAATTY 1 cut(s) 582
XhoI CTCGAG 2 cut(s) 464, 561
XmiI GTMKAC 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.