FvH4_3g19790

bifunctional methylthioribulose-1-phosphate dehydratase enolase-phosphatase E1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
12945328 .. 12953077
7750 bp
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UTR
Exon/CDS
Intron
FvH4_3g19790.t1

Sequence Viewer

Length: 1554 bp
ATGGCAGCAGTGGCACTTAACGGAGTGAACCTCGGAACGACGTCGCAGGCATACTTGGAAAGCAAACCAGTCAACGACACAAAGGTTCTGATATCCGACCTGTGCCGTCAGTTCTACAGCCTCGGATGGGTGTCTGGGACCGGTGGTAGTATCACAATCAAAGTCCACGATGAATCTGTTCCTAAGCCTCAGCAACTCGTCATCATGTCCCCTTCTGGGGTACAGAAGGAGAGAATGTTACCGGAGGACATGTATGTGTTGTCTCCAACTGGGACTGTGTTGAGTTCTCCATCTCCAAAGCCCTATCCGAACAAGCCTCCCAAGTGTTCTGACTGTGGTCCTCTCTTTATGAAGGCATATGAGATGTGCAACGCGGGAGCTGTTATTCATAGTCATGGCATAGAATCATGTCTTGTAACCATGATCAATCCATCATCCAAAGAATTTCGAATTACTCACATGGAGATGATCAAAGGAATCAAAGGGCATGGTTATTATGATGAACTTGTGGTCCCGATAATAGAGAATACTGCCTATGAGTATGAGCTCACAGAGTCCCTTGCCAAAGCTATTGCAGCATACCCTAAAGCAACAGCTGTGCTTGTTCGTAATCATGGCATCTATATATGGGGAGACTCATGGATAAGTGCTAAGACTCAGGCCGAATGTTATCACTATCTCTTTGATGCTGCTATCAAACTTAACCAGTTGGGTTTGGATTGGTCTACTCCACTTCACGGTCCTCTACATGTAGGAAGTGGTAAGCATAGAGATGTATCTGTTAAGGCATGGACTGCAGATCCAGATAACAATTCTAAGCCACGGCGTTGCATTGTTCTTGACATTGAGGGGACTACTACTCCCATATCATTTGTGACTGATGTTCTCTTTCCATATGCTCGCGATAATGTAGAGAGGCATTTGTCTGAAACATATGACAGTGCAGAGACAAAGGATGACATAAAATTGTTGCGGTGCCAGGTTCAAGATGACCTGGAAAAAGGCGTTGCTGGTGCTGTTCCCATCCCCTCTGACGAAGCTGGAAAAGAGGAGGTTGTTGGAGCTTTGGTTGCTAATGTTGAATCTATGATAAAAGCTGATAGAAAGATCACAGCGTTGAAACAATTGCAAGGTCATATATGGCGAACTGGATTTGAAAAGAACGAATTGAAGGGTGTAGTCTTTGAGGATGTACCAGAAGCTCTCATGAAATGGCATGATCAGGGCATAAAGGTGTACATATACTCCAGCGGTAGTAGGTTGGCTCAAAGGCTTTTATTTGGGTACTCAAACTATGGGGACCTGAGAAAATATTTGTCTGGATTTTTTGACACAACAGTGGGGAACAAAAGAGAAACCAGAAGTTATGCTGAAATTGCCGAATCTGTTGGAGTTGATAGACCATCAGAGGTCTTGTTTCTGACAGACGTCTTTCAAGAAGCTGTAGCTGCAAAAGCGGCAGGATTGGAAGTGATTGTATCTATCAGACCAGGAAATGGGCCTCTTCCAGACTCTCATGGATTCAAGACAATCACTTCTTTCTCAGAGATCTGA

Protein Analysis

518

Amino Acids

56.9

Weight (kDa)

5.83

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldolase_II PF00596 31 - 230 6.3e-33 Class II Aldolase and Adducin N-terminal domain
Hydrolase PF00702 276 - 488 1.6e-09 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 44, 1431
AccB1I GGYRCC 1 cut(s) 975
AccB7I CCANNNNNTGG 1 cut(s) 1496
AccI GTMKAC 1 cut(s) 725
AccII CGCG 2 cut(s) 374, 903
AciI CCGC 4 cut(s) 374, 973, 1251, 1457
AclWI GGATC 1 cut(s) 794
AcsI RAATTY 1 cut(s) 443
AcyI GRCGYC 2 cut(s) 41, 1428
AfaI GTAC 4 cut(s) 222, 1194, 1238, 1286
AfiI CCNNNNNNNGG 5 cut(s) 127, 216, 217, 737, 1496
AflIII ACRYGT 2 cut(s) 249, 748
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 7 cut(s) 986, 1082, 1120, 1157, 1171, 1436, 1525
AjnI CCWGG 3 cut(s) 978, 993, 1489
AleI CACNNNNGTG 1 cut(s) 1337
AloI GAACNNNNNNTCC 2 cut(s) 495, 527
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 3 cut(s) 267, 627, 941
AlwI GGATC 1 cut(s) 794
AoxI GGCC 2 cut(s) 660, 1499
ApeKI GCWGC 4 cut(s) 5, 575, 689, 1448
ApoI RAATTY 1 cut(s) 443
AsiGI ACCGGT 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 177
AspS9I GGNCC 6 cut(s) 138, 338, 511, 740, 1300, 1499
AsuII TTCGAA 1 cut(s) 448
AvaII GGWCC 5 cut(s) 138, 338, 511, 740, 1300
BanI GGYRCC 1 cut(s) 975
BanII GRGCYC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 549
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 4 cut(s) 17, 587, 676, 1435
BccI CCATC 5 cut(s) 120, 298, 439, 1031, 1411
BceAI ACGGC 2 cut(s) 90, 839
BciT130I CCWGG 3 cut(s) 980, 995, 1491
BclI TGATCA 3 cut(s) 423, 468, 1219
BcoDI GTCTC 3 cut(s) 267, 627, 941
BfmI CTRYAG 3 cut(s) 115, 795, 1443
BglII AGATCT 1 cut(s) 1548
BisI GCNGC 5 cut(s) 6, 576, 690, 1449, 1458
BlsI GCNGC 5 cut(s) 7, 577, 691, 1450, 1459
Bme1390I CCNGG 3 cut(s) 980, 995, 1491
Bme18I GGWCC 5 cut(s) 138, 338, 511, 740, 1300
BmgT120I GGNCC 6 cut(s) 138, 338, 511, 740, 1300, 1499
BmiI GGNNCC 4 cut(s) 139, 513, 977, 1301
BmrFI CCNGG 3 cut(s) 980, 995, 1491
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 627, 676
BmuI ACTGGG 1 cut(s) 279
BoxI GACNNNNGTC 2 cut(s) 336, 1427
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 1231
Bpu10I CCTNAGC 2 cut(s) 183, 189
Bpu14I TTCGAA 1 cut(s) 448
BsaHI GRCGYC 2 cut(s) 41, 1428
BsaJI CCNNGG 3 cut(s) 31, 121, 821
BsaWI WCCGGW 2 cut(s) 140, 241
Bsc4I CCNNNNNNNGG 5 cut(s) 127, 216, 217, 737, 1496
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 4 cut(s) 68, 274, 706, 1153
BseBI CCWGG 3 cut(s) 980, 995, 1491
BseDI CCNNGG 3 cut(s) 31, 121, 821
BseGI GGATG 5 cut(s) 131, 434, 961, 1023, 1195
BseLI CCNNNNNNNGG 5 cut(s) 127, 216, 217, 737, 1496
BseMII CTCAG 3 cut(s) 203, 671, 1295
BseNI ACTGG 4 cut(s) 68, 274, 706, 1153
BseRI GAGGAG 1 cut(s) 1064
BseXI GCAGC 4 cut(s) 17, 587, 676, 1435
BsgI GTGCAG 1 cut(s) 963
Bsh1236I CGCG 2 cut(s) 374, 903
BshFI GGCC 2 cut(s) 662, 1501
BshNI GGYRCC 1 cut(s) 975
BshTI ACCGGT 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 2 cut(s) 141, 242
BslFI GGGAC 7 cut(s) 151, 193, 286, 497, 541, 865, 1313
BslI CCNNNNNNNGG 5 cut(s) 127, 216, 217, 737, 1496
BsmAI GTCTC 3 cut(s) 267, 627, 941
BsmFI GGGAC 7 cut(s) 151, 193, 286, 497, 541, 865, 1313
BsnI GGCC 2 cut(s) 662, 1501
Bsp119I TTCGAA 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 549
Bsp1407I TGTACA 1 cut(s) 1236
Bsp143I GATC 6 cut(s) 423, 468, 799, 1107, 1219, 1548
Bsp68I TCGCGA 1 cut(s) 903
BspACI CCGC 4 cut(s) 374, 973, 1251, 1457
BspANI GGCC 2 cut(s) 662, 1501
BspCNI CTCAG 3 cut(s) 202, 670, 1296
BspFNI CGCG 2 cut(s) 374, 903
BspHI TCATGA 1 cut(s) 1206
BspLI GGNNCC 4 cut(s) 139, 513, 977, 1301
BspMAI CTGCAG 1 cut(s) 799
BspPI GGATC 1 cut(s) 794
BspT104I TTCGAA 1 cut(s) 448
BspT107I GGYRCC 1 cut(s) 975
BsrFI RCCGGY 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 1236
BsrI ACTGG 4 cut(s) 68, 274, 706, 1153
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 31, 121, 821
BssMI GATC 6 cut(s) 423, 468, 799, 1107, 1219, 1548
BssNI GRCGYC 2 cut(s) 41, 1428
Bst2UI CCWGG 3 cut(s) 980, 995, 1491
Bst4CI ACNGT 5 cut(s) 277, 335, 740, 941, 1339
Bst6I CTCTTC 1 cut(s) 1509
BstACI GRCGYC 2 cut(s) 41, 1428
BstAPI GCANNNNNTGC 1 cut(s) 794
BstAUI TGTACA 1 cut(s) 1236
BstBI TTCGAA 1 cut(s) 448
BstC8I GCNNGC 2 cut(s) 48, 901
BstDEI CTNAG 7 cut(s) 183, 189, 651, 657, 816, 1304, 1543
BstDSI CCRYGG 1 cut(s) 821
BstF5I GGATG 5 cut(s) 131, 434, 961, 1023, 1195
BstFNI CGCG 2 cut(s) 374, 903
BstKTI GATC 6 cut(s) 426, 471, 802, 1110, 1222, 1551
BstMAI GTCTC 3 cut(s) 267, 627, 941
BstMBI GATC 6 cut(s) 423, 468, 799, 1107, 1219, 1548
BstMWI GCNNNNNNNGC 8 cut(s) 11, 575, 794, 1070, 1376, 1448, 1454, 1457
BstNI CCWGG 3 cut(s) 980, 995, 1491
BstNSI RCATGY 2 cut(s) 253, 752
BstPAI GACNNNNGTC 2 cut(s) 336, 1427
BstSCI CCNGG 3 cut(s) 978, 993, 1489
BstSFI CTRYAG 3 cut(s) 115, 795, 1443
BstUI CGCG 2 cut(s) 374, 903
BstV1I GCAGC 4 cut(s) 17, 587, 676, 1435
BstX2I RGATCY 2 cut(s) 799, 1548
BstYI RGATCY 2 cut(s) 799, 1548
BsuRI GGCC 2 cut(s) 662, 1501
BtgI CCRYGG 1 cut(s) 821
BtsCI GGATG 5 cut(s) 131, 434, 961, 1023, 1195
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 3 cut(s) 15, 946, 1344
BtuMI TCGCGA 1 cut(s) 903
Cac8I GCNNGC 2 cut(s) 48, 901
CciI TCATGA 1 cut(s) 1206
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 6 cut(s) 138, 338, 511, 740, 1300, 1499
Csp6I GTAC 4 cut(s) 221, 1193, 1237, 1285
CspAI ACCGGT 1 cut(s) 140
CviQI GTAC 4 cut(s) 221, 1193, 1237, 1285
DdeI CTNAG 7 cut(s) 183, 189, 651, 657, 816, 1304, 1543
DpnI GATC 6 cut(s) 425, 470, 801, 1109, 1221, 1550
DpnII GATC 6 cut(s) 423, 468, 799, 1107, 1219, 1548
Eam1104I CTCTTC 1 cut(s) 1509
EarI CTCTTC 1 cut(s) 1509
Ecl136II GAGCTC 1 cut(s) 547
Eco24I GRGCYC 1 cut(s) 549
Eco32I GATATC 1 cut(s) 93
Eco47I GGWCC 5 cut(s) 138, 338, 511, 740, 1300
Eco53kI GAGCTC 1 cut(s) 547
EcoICRI GAGCTC 1 cut(s) 547
EcoO109I RGGNCCY 1 cut(s) 1300
EcoRII CCWGG 3 cut(s) 978, 993, 1489
EcoRV GATATC 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 549
FaqI GGGAC 7 cut(s) 151, 193, 286, 497, 541, 865, 1313
FauI CCCGC 1 cut(s) 367
FauNDI CATATG 3 cut(s) 358, 895, 934
FbaI TGATCA 3 cut(s) 423, 468, 1219
FblI GTMKAC 1 cut(s) 725
Fnu4HI GCNGC 5 cut(s) 6, 576, 690, 1449, 1458
FokI GGATG 5 cut(s) 138, 421, 968, 1010, 1202
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 5 cut(s) 6, 576, 690, 1449, 1458
GluI GCNGC 5 cut(s) 6, 576, 690, 1449, 1458
GsuI CTGGAG 1 cut(s) 1231
HaeIII GGCC 2 cut(s) 662, 1501
HapII CCGG 2 cut(s) 141, 242
Hin1I GRCGYC 2 cut(s) 41, 1428
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 141, 242
Hpy166II GTNNAC 5 cut(s) 28, 73, 166, 726, 1237
Hpy8I GTNNAC 5 cut(s) 28, 73, 166, 726, 1237
Hpy99I CGWCG 2 cut(s) 43, 46
HpyAV CCTTC 4 cut(s) 220, 222, 346, 1165
HpyCH4III ACNGT 5 cut(s) 277, 335, 740, 941, 1339
HpyCH4IV ACGT 2 cut(s) 41, 1428
HpyCH4V TGCA 7 cut(s) 369, 575, 797, 831, 944, 1129, 1451
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 575, 794, 1070, 1376, 1448, 1454, 1457
HpyF3I CTNAG 7 cut(s) 183, 189, 651, 657, 816, 1304, 1543
HpySE526I ACGT 2 cut(s) 41, 1428
Hsp92I GRCGYC 2 cut(s) 41, 1428
Ksp22I TGATCA 3 cut(s) 423, 468, 1219
Kzo9I GATC 6 cut(s) 423, 468, 799, 1107, 1219, 1548
LmnI GCTCC 2 cut(s) 377, 1061
Lsp1109I GCAGC 4 cut(s) 17, 587, 676, 1435
LweI GCATC 2 cut(s) 627, 676
MaeII ACGT 2 cut(s) 41, 1428
MaeIII GTNAC 3 cut(s) 237, 415, 874
MalI GATC 6 cut(s) 425, 470, 801, 1109, 1221, 1550
MboI GATC 6 cut(s) 423, 468, 799, 1107, 1219, 1548
MboII GAAGA 1 cut(s) 1496
MfeI CAATTG 1 cut(s) 1124
MflI RGATCY 2 cut(s) 799, 1548
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 7 cut(s) 443, 450, 811, 965, 1124, 1166, 1374
MlyI GAGTC 4 cut(s) 563, 629, 649, 1505
MmeI TCCRAC 4 cut(s) 120, 290, 1039, 1369
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 3 cut(s) 18, 702, 783
MslI CAYNNNNRTG 6 cut(s) 254, 393, 464, 771, 1232, 1337
MspA1I CMGCKG 2 cut(s) 596, 1251
MspI CCGG 2 cut(s) 141, 242
MspR9I CCNGG 3 cut(s) 980, 995, 1491
MunI CAATTG 1 cut(s) 1124
MvaI CCWGG 3 cut(s) 980, 995, 1491
MvnI CGCG 2 cut(s) 374, 903
MwoI GCNNNNNNNGC 8 cut(s) 11, 575, 794, 1070, 1376, 1448, 1454, 1457
NdeI CATATG 3 cut(s) 358, 895, 934
NdeII GATC 6 cut(s) 423, 468, 799, 1107, 1219, 1548
NlaIV GGNNCC 4 cut(s) 139, 513, 977, 1301
NmuCI GTSAC 1 cut(s) 874
NruI TCGCGA 1 cut(s) 903
NspI RCATGY 2 cut(s) 253, 752
NspV TTCGAA 1 cut(s) 448
OliI CACNNNNGTG 1 cut(s) 1337
PagI TCATGA 1 cut(s) 1206
PciI ACATGT 2 cut(s) 249, 748
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 6 cut(s) 173, 404, 477, 1082, 1382, 1521
PflMI CCANNNNNTGG 1 cut(s) 1496
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 5 cut(s) 7, 577, 691, 1450, 1459
PleI GAGTC 4 cut(s) 562, 629, 649, 1505
PpsI GAGTC 4 cut(s) 562, 629, 649, 1505
PpuMI RGGWCCY 1 cut(s) 1300
PscI ACATGT 2 cut(s) 249, 748
PshAI GACNNNNGTC 2 cut(s) 336, 1427
Psp124BI GAGCTC 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 1300
Psp6I CCWGG 3 cut(s) 978, 993, 1489
PspGI CCWGG 3 cut(s) 978, 993, 1489
PspN4I GGNNCC 4 cut(s) 139, 513, 977, 1301
PspPI GGNCC 6 cut(s) 138, 338, 511, 740, 1300, 1499
PspPPI RGGWCCY 1 cut(s) 1300
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 2 cut(s) 799, 1548
PvuII CAGCTG 1 cut(s) 596
RruI TCGCGA 1 cut(s) 903
RsaI GTAC 4 cut(s) 222, 1194, 1238, 1286
RsaNI GTAC 4 cut(s) 221, 1193, 1237, 1285
RseI CAYNNNNRTG 6 cut(s) 254, 393, 464, 771, 1232, 1337
SacI GAGCTC 1 cut(s) 549
SaqAI TTAA 3 cut(s) 18, 702, 783
SatI GCNGC 5 cut(s) 6, 576, 690, 1449, 1458
Sau3AI GATC 6 cut(s) 423, 468, 799, 1107, 1219, 1548
Sau96I GGNCC 6 cut(s) 138, 338, 511, 740, 1300, 1499
SchI GAGTC 4 cut(s) 563, 629, 649, 1505
ScrFI CCNGG 3 cut(s) 980, 995, 1491
SduI GDGCHC 1 cut(s) 549
SfaNI GCATC 2 cut(s) 627, 676
SfcI CTRYAG 3 cut(s) 115, 795, 1443
SfuI TTCGAA 1 cut(s) 448
SinI GGWCC 5 cut(s) 138, 338, 511, 740, 1300
SmiMI CAYNNNNRTG 6 cut(s) 254, 393, 464, 771, 1232, 1337
Sse9I AATT 7 cut(s) 443, 450, 811, 965, 1124, 1166, 1374
SsiI CCGC 4 cut(s) 374, 973, 1251, 1457
SspI AATATT 1 cut(s) 1313
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 3 cut(s) 978, 993, 1489
TaaI ACNGT 5 cut(s) 277, 335, 740, 941, 1339
TaiI ACGT 2 cut(s) 44, 1431
TaqI TCGA 1 cut(s) 448
TasI AATT 7 cut(s) 443, 450, 811, 965, 1124, 1166, 1374
TatI WGTACW 1 cut(s) 1236
TauI GCSGC 1 cut(s) 1460
TfiI GAWTC 6 cut(s) 173, 404, 477, 1082, 1382, 1521
Tru1I TTAA 3 cut(s) 18, 702, 783
Tru9I TTAA 3 cut(s) 18, 702, 783
TscAI CASTG 3 cut(s) 15, 946, 1344
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 4 cut(s) 5, 575, 689, 1448
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 5 cut(s) 186, 365, 377, 516, 1223
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 3 cut(s) 15, 946, 1344
Van91I CCANNNNNTGG 1 cut(s) 1496
VpaK11BI GGWCC 5 cut(s) 138, 338, 511, 740, 1300
XapI RAATTY 1 cut(s) 443
XceI RCATGY 2 cut(s) 253, 752
XmiI GTMKAC 1 cut(s) 725
XmnI GAANNNNTTC 1 cut(s) 177
ZraI GACGTC 2 cut(s) 42, 1429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.