Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006038

Physical Location & Seq

Genomic Coordinates Reverse (-)

13870197 .. 13871905

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTTCTTAGCAGCAGGTAGCAACAAAAGCTTGTTGATCATTCTGCTATTCTGTGTTTCTGCCATACTACAGACTCGAGCAGAAACTAAAGTTTGCTACAGCAAGGGCAGTCCATGTTTTATGAAGAAGATACAATGCCCTACACAATGCCCGTCCTCTTCACCATCCGACCCCAAAGTAACTAAGGTCTGCGTTGTCAACTGTAACTCCCCCATATGCAAAGCTGAGTGCAAGAACCGCAAGCCTAACTGCAATGGTCCTGGATCAGCATGCCATGACCCTCGCTTCATTGGTGGAGATGGCATTGTCTTTTACTTCCACGGCAAGAAAAACGAGCACTTCACCCTGGTTTCCGATCCCAACCTCCAAATCAATGCCCGCTTCATCGGTCTCCGCCCTAAAGGCCGAAGCAGGGACTACACATGGATTCAAGCCCTAGGACTTCTCTTTGACTCTAACAGCTTCACACTCGAGGCGACCCCATCACCAACATGGGATGATGAAGTTGATCACTTGAAATTCTCTTACAATGGTGAGGAGCTGATCATCCCAGGATCCGATCTCTCCGTTTGGCAATCTCAGGAATCTACCATTAGAGTGGAGAGAACATCAACCAATAACAGTGTCCTAGTCACTATCCCAGAAGTAGCTGAAATCTCAGTAAATGTGGTGCCTGTGACAAAGGAAGATGATAGGATCCACAAATATCAGTTACCATCGGATGACTGTTTTGCTCACCTTGAAGTGCAGTTCAGATTCTATGGCCTTTCCTCAAATGTTGAAGGAGTGCTTGGAAGGACTTACCAGCCGGATTTCAAGAACCCGGCAAAGCCAGGAGTAGCCATGGCAGTAGTTGGAGGTGAAGACAAGTACAAAACAAAGTCACTTGTTTCTGCCCATTGCATGGCTTGTGTGTTCACTCAGGCCGGTAATCAAAAGGATTCAATTGTGATGGAATACAGCAAGCTGGACTGCACTGATAATACCTTCAGTGGGAATGGAATAGTTTGCAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

341

Amino Acids

37.54

Weight (kDa)

7.44

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Root_cap	PF06830	251 - 307	1.1e-24	Root cap

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54890
fragaria_vesca	FvH4_3g20790 FvH4_3g20800
malus_domestica	MD03G1220800.v1.1 MD03G1221100.v1.1 MD03G1221200.v1.1 MD11G1238500.v1.1 MD11G1238600.v1.1
prunus_persica	Prupe.4G188100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0035081 RchiOBHm_Chr5g0035091
rosa_laevigata	RLG00000033593 RLG00000033595
rosa_multiflora	Rmu_sc0000879.1_g000014 Rmu_sc0000879.1_g000027 Rmu_sc0005362.1_g000012 Rmu_sc0005362.1_g000027
rosa_roxburghii	Rroxscaffold_1G00045330
rosa_rugosa	Rorug05G0149700 Rorug05G0149800
rosa_samantha	Rh5AG242700 Rh5AG242800 Rh5BG242300 Rh5CG273800 Rh5DG250900
rosa_wichuraiana	Rw5G022170 Rw5G022190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	907
AciI	CCGC	3 cut(s)	241, 382, 397
AclWI	GGATC	6 cut(s)	274, 353, 552, 565, 694, 707
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	976
AfaI	GTAC	1 cut(s)	875
AfiI	CCNNNNNNNGG	3 cut(s)	415, 907, 996
AgsI	TTSAA	6 cut(s)	434, 520, 746, 785, 820, 948
AjnI	CCWGG	4 cut(s)	262, 348, 553, 835
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	6 cut(s)	33, 227, 465, 544, 653, 970
AluI	AGCT	6 cut(s)	33, 227, 465, 544, 653, 970
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	6 cut(s)	274, 353, 552, 565, 694, 707
Ama87I	CYCGRG	2 cut(s)	78, 473
AoxI	GGCC	3 cut(s)	406, 766, 927
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	521
AspA2I	CCTAGG	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	827
AsuHPI	GGTGA	6 cut(s)	156, 337, 480, 548, 731, 875
AvaI	CYCGRG	2 cut(s)	78, 473
AvaII	GGWCC	1 cut(s)	260
AvrII	CCTAGG	1 cut(s)	439
BamHI	GGATCC	2 cut(s)	557, 699
BanI	GGYRCC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	873
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	5 cut(s)	175, 296, 493, 727, 949
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	4 cut(s)	264, 350, 555, 837
BclI	TGATCA	3 cut(s)	39, 511, 546
BcnI	CCSGG	1 cut(s)	827
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	440, 632
BfmI	CTRYAG	2 cut(s)	71, 100
BfuAI	ACCTGC	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	405
BisI	GCNGC	1 cut(s)	15
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	5 cut(s)	264, 350, 555, 827, 837
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	2 cut(s)	78, 473
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	559, 675, 701
BmrFI	CCNGG	5 cut(s)	264, 350, 555, 827, 837
BpiI	GAAGAC	1 cut(s)	873
BpuMI	CCSGG	1 cut(s)	827
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	5 cut(s)	322, 348, 439, 553, 846
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	415, 907, 996
Bse118I	RCCGGY	1 cut(s)	929
Bse3DI	GCAATG	2 cut(s)	262, 901
BseBI	CCWGG	4 cut(s)	264, 350, 555, 837
BseDI	CCNNGG	5 cut(s)	322, 348, 439, 553, 846
BseGI	GGATG	4 cut(s)	167, 505, 549, 730
BseLI	CCNNNNNNNGG	3 cut(s)	415, 907, 996
BseMI	GCAATG	2 cut(s)	262, 901
BseMII	CTCAG	4 cut(s)	219, 596, 675, 938
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	1 cut(s)	26
BsgI	GTGCAG	2 cut(s)	770, 961
BshFI	GGCC	3 cut(s)	408, 768, 929
BshNI	GGYRCC	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	2 cut(s)	78, 473
BsiSI	CCGG	3 cut(s)	812, 827, 930
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	415, 907, 996
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	408, 768, 929
Bso31I	GGTCTC	1 cut(s)	398
BsoBI	CYCGRG	2 cut(s)	78, 473
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	8 cut(s)	39, 266, 358, 511, 546, 557, 562, 699
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	3 cut(s)	241, 382, 397
BspANI	GGCC	3 cut(s)	408, 768, 929
BspCNI	CTCAG	4 cut(s)	220, 595, 674, 937
BspLI	GGNNCC	3 cut(s)	559, 675, 701
BspMI	ACCTGC	1 cut(s)	8
BspPI	GGATC	6 cut(s)	274, 353, 552, 565, 694, 707
BspT107I	GGYRCC	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	2 cut(s)	262, 901
BsrFI	RCCGGY	1 cut(s)	929
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	5 cut(s)	322, 348, 439, 553, 846
BssMI	GATC	8 cut(s)	39, 266, 358, 511, 546, 557, 562, 699
BssT1I	CCWWGG	2 cut(s)	439, 846
Bst2UI	CCWGG	4 cut(s)	264, 350, 555, 837
Bst4CI	ACNGT	3 cut(s)	206, 626, 731
Bst6I	CTCTTC	1 cut(s)	166
BstC8I	GCNNGC	4 cut(s)	245, 274, 382, 968
BstDEI	CTNAG	6 cut(s)	10, 186, 228, 582, 661, 924
BstDSI	CCRYGG	2 cut(s)	322, 846
BstF5I	GGATG	4 cut(s)	167, 505, 549, 730
BstKTI	GATC	8 cut(s)	42, 269, 361, 514, 549, 560, 565, 702
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	8 cut(s)	39, 266, 358, 511, 546, 557, 562, 699
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 240, 405
BstNI	CCWGG	4 cut(s)	264, 350, 555, 837
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	5 cut(s)	262, 348, 553, 825, 835
BstSFI	CTRYAG	2 cut(s)	71, 100
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	873
BstX2I	RGATCY	2 cut(s)	557, 699
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	2 cut(s)	557, 699
BsuRI	GGCC	3 cut(s)	408, 768, 929
BtgI	CCRYGG	2 cut(s)	322, 846
BtsCI	GGATG	4 cut(s)	167, 505, 549, 730
BtsIMutI	CAGTG	3 cut(s)	631, 978, 1000
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	4 cut(s)	245, 274, 382, 968
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	874
CviAII	CATG	7 cut(s)	117, 273, 278, 426, 495, 847, 907
CviQI	GTAC	1 cut(s)	874
DdeI	CTNAG	6 cut(s)	10, 186, 228, 582, 661, 924
DpnI	GATC	8 cut(s)	41, 268, 360, 513, 548, 559, 564, 701
DpnII	GATC	8 cut(s)	39, 266, 358, 511, 546, 557, 562, 699
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	439, 846
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	976
Eco88I	CYCGRG	2 cut(s)	78, 473
EcoRII	CCWGG	4 cut(s)	262, 348, 553, 835
EcoT14I	CCWWGG	2 cut(s)	439, 846
ErhI	CCWWGG	2 cut(s)	439, 846
FaeI	CATG	7 cut(s)	120, 276, 281, 429, 498, 850, 910
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	7 cut(s)	116, 272, 277, 425, 494, 846, 906
FauI	CCCGC	1 cut(s)	389
FauNDI	CATATG	1 cut(s)	218
FbaI	TGATCA	3 cut(s)	39, 511, 546
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	4 cut(s)	154, 512, 536, 737
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	2 cut(s)	440, 632
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	3 cut(s)	408, 768, 929
HapII	CCGG	3 cut(s)	812, 827, 930
Hin1II	CATG	7 cut(s)	120, 276, 281, 429, 498, 850, 910
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	6 cut(s)	76, 430, 455, 587, 759, 944
HpaII	CCGG	3 cut(s)	812, 827, 930
HphI	GGTGA	6 cut(s)	156, 337, 480, 548, 731, 875
Hpy166II	GTNNAC	2 cut(s)	202, 921
Hpy188I	TCNGA	5 cut(s)	172, 358, 562, 724, 758
Hpy188III	TCNNGA	2 cut(s)	584, 820
Hpy8I	GTNNAC	2 cut(s)	202, 921
HpyAV	CCTTC	3 cut(s)	779, 792, 1000
HpyCH4III	ACNGT	3 cut(s)	206, 626, 731
HpyCH4V	TGCA	7 cut(s)	222, 234, 255, 751, 906, 978, 1014
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 240, 405
HpyF3I	CTNAG	6 cut(s)	10, 186, 228, 582, 661, 924
Hsp92II	CATG	7 cut(s)	120, 276, 281, 429, 498, 850, 910
Ksp22I	TGATCA	3 cut(s)	39, 511, 546
Kzo9I	GATC	8 cut(s)	39, 266, 358, 511, 546, 557, 562, 699
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	2 cut(s)	440, 632
MaeIII	GTNAC	6 cut(s)	181, 206, 634, 679, 714, 885
MalI	GATC	8 cut(s)	41, 268, 360, 513, 548, 559, 564, 701
MboI	GATC	8 cut(s)	39, 266, 358, 511, 546, 557, 562, 699
MboII	GAAGA	5 cut(s)	139, 142, 153, 701, 878
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	2 cut(s)	557, 699
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	2 cut(s)	521, 948
MlyI	GAGTC	2 cut(s)	70, 449
MmeI	TCCRAC	2 cut(s)	195, 838
MnlI	CCTC	7 cut(s)	169, 294, 377, 469, 532, 784, 854
MslI	CAYNNNNRTG	2 cut(s)	493, 599
MspI	CCGG	3 cut(s)	812, 827, 930
MspR9I	CCNGG	5 cut(s)	264, 350, 555, 827, 837
MunI	CAATTG	1 cut(s)	948
MvaI	CCWGG	4 cut(s)	264, 350, 555, 837
MwoI	GCNNNNNNNGC	3 cut(s)	30, 240, 405
NciI	CCSGG	1 cut(s)	827
NcoI	CCATGG	1 cut(s)	846
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	8 cut(s)	39, 266, 358, 511, 546, 557, 562, 699
NlaIII	CATG	7 cut(s)	120, 276, 281, 429, 498, 850, 910
NlaIV	GGNNCC	3 cut(s)	559, 675, 701
NmuCI	GTSAC	3 cut(s)	634, 679, 885
NspI	RCATGY	1 cut(s)	276
PaeI	GCATGC	1 cut(s)	276
PaeR7I	CTCGAG	2 cut(s)	78, 473
PfeI	GAWTC	4 cut(s)	430, 587, 759, 944
PflMI	CCANNNNNTGG	1 cut(s)	907
PfoI	TCCNGGA	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	2 cut(s)	70, 449
PpsI	GAGTC	2 cut(s)	70, 449
Psp6I	CCWGG	4 cut(s)	262, 348, 553, 835
PspGI	CCWGG	4 cut(s)	262, 348, 553, 835
PspN4I	GGNNCC	3 cut(s)	559, 675, 701
PspPI	GGNCC	1 cut(s)	260
PspXI	VCTCGAGB	2 cut(s)	78, 473
PsuI	RGATCY	2 cut(s)	557, 699
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
RseI	CAYNNNNRTG	2 cut(s)	493, 599
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	8 cut(s)	39, 266, 358, 511, 546, 557, 562, 699
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	2 cut(s)	70, 449
ScrFI	CCNGG	5 cut(s)	264, 350, 555, 827, 837
SduI	GDGCHC	1 cut(s)	342
SfcI	CTRYAG	2 cut(s)	71, 100
Sfr274I	CTCGAG	2 cut(s)	78, 473
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	2 cut(s)	78, 473
SmiMI	CAYNNNNRTG	2 cut(s)	493, 599
SmlI	CTYRAG	2 cut(s)	78, 473
SmoI	CTYRAG	2 cut(s)	78, 473
SphI	GCATGC	1 cut(s)	276
Sse9I	AATT	2 cut(s)	521, 948
SsiI	CCGC	3 cut(s)	241, 382, 397
SspMI	CTAG	2 cut(s)	440, 632
StyD4I	CCNGG	5 cut(s)	262, 348, 553, 825, 835
StyI	CCWWGG	2 cut(s)	439, 846
TaaI	ACNGT	3 cut(s)	206, 626, 731
TaqI	TCGA	2 cut(s)	79, 474
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	521, 948
TatI	WGTACW	1 cut(s)	873
TfiI	GAWTC	4 cut(s)	430, 587, 759, 944
TscAI	CASTG	3 cut(s)	631, 985, 1000
TseFI	GTSAC	3 cut(s)	634, 679, 885
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	3 cut(s)	634, 679, 885
TspDTI	ATGAA	4 cut(s)	140, 280, 376, 519
TspGWI	ACGGA	1 cut(s)	559
TspRI	CASTG	3 cut(s)	631, 985, 1000
Van91I	CCANNNNNTGG	1 cut(s)	907
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	492
XhoI	CTCGAG	2 cut(s)	78, 473
XmaJI	CCTAGG	1 cut(s)	439
XspI	CTAG	2 cut(s)	440, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.