RLG00000033593

Root cap

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006038
Physical Location & Seq
Reverse (-)
29427061 .. 29428192
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033593

Sequence Viewer

Length: 720 bp
ATGGATTTCTTAGGCAGGAAGAGAAGTTTTTTTCTCACATTGCTCATCTTTGTATCTACTGCGGGCAAGAAAAACGAGCACTTCAGCTTAGTTTCCGATCCCAACCTCCAAATCAATGCTCGCTTCATTGGTCTTCGCCCTGAAGGCCGAAGCAGGGACTATACCTGGATTCAAGCCCTTGGACTCCTCTTCAATTCGAACAGCTTCACACTCGAGGCCACCCCATCAGCAACATGGGACGATGAGATTGACCACTTGAAGTTCTCTTACAATGGAAACTTCTATATTAGAGTGGAGAGGACTTCGAGCAAGAACAGTGTCTTAGTCACTCTCCCAGAAGTTGCTGAAATTTCAGTCAATGTGGAACCTGTGACAAAGGAAGAAGATAAGATCCACAATTATCAAATACCATCGGATGACTGTTTTGCTCACCTGGAAGTACAGTTCAGATTCTGCGGTCTGTCATCAAATGTTGAAGGAGTACTTGGAAGGACTTACCAGCCAGATTTCAAGAACCCGGCAAAGGCTGGAGTAGCCATGCCGGTAGTTGGTGGTGAATACAAGTACAAAACAACATCACTTGTCTCTGCGGATTGTTTTGCTTGTGTGTTCACTCCGGCCGGGATGTTGGATCAAACGGATTCAAGAGTGATGGATTACGGAAAGCTAGACTGCACCGGCAACACCTTCAGTGGGAATGCAATAGTTTGCAGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

240

Amino Acids

26.72

Weight (kDa)

5.84

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Root_cap PF06830 148 - 204 2.6e-25 Root cap
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 62, 456, 590
AclWI GGATC 3 cut(s) 92, 385, 639
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 3 cut(s) 67, 162, 673
AfaI GTAC 3 cut(s) 441, 483, 566
AfiI CCNNNNNNNGG 4 cut(s) 154, 523, 548, 693
AgsI TTSAA 6 cut(s) 173, 193, 259, 476, 511, 645
AjnI CCWGG 2 cut(s) 164, 432
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AloI GAACNNNNNNTCC 2 cut(s) 428, 460
AluBI AGCT 3 cut(s) 87, 204, 667
AluI AGCT 3 cut(s) 87, 204, 667
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 589
AlwI GGATC 3 cut(s) 92, 385, 639
AlwNI CAGNNNCTG 1 cut(s) 453
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 3 cut(s) 145, 216, 618
ApoI RAATTY 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 203
AsuC2I CCSGG 2 cut(s) 518, 622
AsuHPI GGTGA 2 cut(s) 422, 566
AsuII TTCGAA 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 81
BccI CCATC 3 cut(s) 232, 418, 646
BciT130I CCWGG 2 cut(s) 166, 434
BcnI CCSGG 2 cut(s) 518, 622
BcoDI GTCTC 1 cut(s) 589
BfaI CTAG 1 cut(s) 668
BglI GCCNNNNNGGC 1 cut(s) 144
BmcAI AGTACT 1 cut(s) 483
Bme1390I CCNGG 4 cut(s) 166, 434, 518, 622
BmeT110I CYCGRG 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 4 cut(s) 166, 434, 518, 622
BpiI GAAGAC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 197
BpuMI CCSGG 2 cut(s) 518, 622
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 4 cut(s) 154, 523, 548, 693
Bse118I RCCGGY 2 cut(s) 541, 677
Bse3DI GCAATG 1 cut(s) 38
BseBI CCWGG 2 cut(s) 166, 434
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 421, 630
BseLI CCNNNNNNNGG 4 cut(s) 154, 523, 548, 693
BseMI GCAATG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 176
BseX3I CGGCCG 1 cut(s) 618
BsgI GTGCAG 1 cut(s) 658
Bsh1285I CGRYCG 1 cut(s) 621
BshFI GGCC 3 cut(s) 147, 218, 620
BsiEI CGRYCG 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 5 cut(s) 518, 542, 617, 621, 678
BslFI GGGAC 2 cut(s) 170, 251
BslI CCNNNNNNNGG 4 cut(s) 154, 523, 548, 693
BsmAI GTCTC 1 cut(s) 589
BsmFI GGGAC 2 cut(s) 170, 251
BsmI GAATGC 1 cut(s) 703
BsnI GGCC 3 cut(s) 147, 218, 620
BsoBI CYCGRG 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 3 cut(s) 97, 390, 631
BspACI CCGC 3 cut(s) 62, 456, 590
BspANI GGCC 3 cut(s) 147, 218, 620
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 3 cut(s) 92, 385, 639
BspT104I TTCGAA 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 38
BsrFI RCCGGY 2 cut(s) 541, 677
BssAI RCCGGY 2 cut(s) 541, 677
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 3 cut(s) 97, 390, 631
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 166, 434
Bst4CI ACNGT 3 cut(s) 317, 422, 444
Bst6I CTCTTC 2 cut(s) 14, 194
BstBI TTCGAA 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 64, 121
BstDEI CTNAG 3 cut(s) 10, 88, 322
BstF5I GGATG 2 cut(s) 421, 630
BstKTI GATC 3 cut(s) 100, 393, 634
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 3 cut(s) 97, 390, 631
BstMCI CGRYCG 1 cut(s) 621
BstMWI GCNNNNNNNGC 2 cut(s) 144, 533
BstNI CCWGG 2 cut(s) 166, 434
BstSCI CCNGG 4 cut(s) 164, 432, 516, 620
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 390
BstYI RGATCY 1 cut(s) 390
BstZI CGGCCG 1 cut(s) 618
BsuRI GGCC 3 cut(s) 147, 218, 620
BtsCI GGATG 2 cut(s) 421, 630
BtsIMutI CAGTG 2 cut(s) 322, 697
Cac8I GCNNGC 2 cut(s) 64, 121
CaiI CAGNNNCTG 1 cut(s) 453
Cfr10I RCCGGY 2 cut(s) 541, 677
Csp6I GTAC 3 cut(s) 440, 482, 565
CviAII CATG 2 cut(s) 234, 538
CviQI GTAC 3 cut(s) 440, 482, 565
DdeI CTNAG 3 cut(s) 10, 88, 322
DpnI GATC 3 cut(s) 99, 392, 633
DpnII GATC 3 cut(s) 97, 390, 631
EaeI YGGCCR 1 cut(s) 618
EagI CGGCCG 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 14, 194
EarI CTCTTC 2 cut(s) 14, 194
EclXI CGGCCG 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 178
Eco52I CGGCCG 1 cut(s) 618
Eco57I CTGAAG 3 cut(s) 67, 162, 673
Eco88I CYCGRG 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 164, 432
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 2 cut(s) 237, 541
FaiI YATR 4 cut(s) 162, 235, 285, 539
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 170, 251
FatI CATG 2 cut(s) 233, 537
FauI CCCGC 1 cut(s) 55
FokI GGATG 2 cut(s) 428, 637
FspBI CTAG 1 cut(s) 668
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 3 cut(s) 147, 218, 620
HapII CCGG 5 cut(s) 518, 542, 617, 621, 678
Hin1II CATG 2 cut(s) 237, 541
HinfI GANTC 4 cut(s) 169, 183, 450, 641
HpaII CCGG 5 cut(s) 518, 542, 617, 621, 678
HphI GGTGA 2 cut(s) 422, 566
Hpy166II GTNNAC 1 cut(s) 612
Hpy188I TCNGA 3 cut(s) 97, 415, 449
Hpy188III TCNNGA 2 cut(s) 511, 645
Hpy8I GTNNAC 1 cut(s) 612
HpyAV CCTTC 4 cut(s) 137, 470, 483, 697
HpyCH4III ACNGT 3 cut(s) 317, 422, 444
HpyCH4V TGCA 3 cut(s) 675, 701, 711
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 533
HpyF3I CTNAG 3 cut(s) 10, 88, 322
Hsp92II CATG 2 cut(s) 237, 541
Kzo9I GATC 3 cut(s) 97, 390, 631
MaeI CTAG 1 cut(s) 668
MaeIII GTNAC 2 cut(s) 325, 370
MalI GATC 3 cut(s) 99, 392, 633
MboI GATC 3 cut(s) 97, 390, 631
MboII GAAGA 5 cut(s) 31, 125, 181, 392, 395
MflI RGATCY 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 3 cut(s) 193, 348, 397
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 4 cut(s) 116, 197, 208, 291
MroXI GAANNNNTTC 1 cut(s) 203
MspI CCGG 5 cut(s) 518, 542, 617, 621, 678
MspR9I CCNGG 4 cut(s) 166, 434, 518, 622
Mva1269I GAATGC 1 cut(s) 703
MvaI CCWGG 2 cut(s) 166, 434
MwoI GCNNNNNNNGC 2 cut(s) 144, 533
NciI CCSGG 2 cut(s) 518, 622
NdeII GATC 3 cut(s) 97, 390, 631
NlaIII CATG 2 cut(s) 237, 541
NlaIV GGNNCC 1 cut(s) 366
NmuCI GTSAC 2 cut(s) 325, 370
NspV TTCGAA 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 212
PctI GAATGC 1 cut(s) 703
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 3 cut(s) 169, 450, 641
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 164, 432
PspGI CCWGG 2 cut(s) 164, 432
PspN4I GGNNCC 1 cut(s) 366
PspXI VCTCGAGB 1 cut(s) 212
PstNI CAGNNNCTG 1 cut(s) 453
PsuI RGATCY 1 cut(s) 390
RsaI GTAC 3 cut(s) 441, 483, 566
RsaNI GTAC 3 cut(s) 440, 482, 565
Sau3AI GATC 3 cut(s) 97, 390, 631
ScaI AGTACT 1 cut(s) 483
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 4 cut(s) 166, 434, 518, 622
SduI GDGCHC 1 cut(s) 81
SetI ASST 8 cut(s) 89, 108, 167, 206, 370, 435, 669, 689
Sfr274I CTCGAG 1 cut(s) 212
SfuI TTCGAA 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 3 cut(s) 193, 348, 397
SsiI CCGC 3 cut(s) 62, 456, 590
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 4 cut(s) 164, 432, 516, 620
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 3 cut(s) 317, 422, 444
TaqI TCGA 3 cut(s) 197, 213, 305
TasI AATT 3 cut(s) 193, 348, 397
TatI WGTACW 3 cut(s) 439, 481, 564
TfiI GAWTC 3 cut(s) 169, 450, 641
TscAI CASTG 2 cut(s) 322, 697
TseFI GTSAC 2 cut(s) 325, 370
Tsp45I GTSAC 2 cut(s) 325, 370
TspDTI ATGAA 1 cut(s) 115
TspGWI ACGGA 2 cut(s) 653, 675
TspRI CASTG 2 cut(s) 322, 697
XapI RAATTY 1 cut(s) 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XhoI CTCGAG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 668
ZrmI AGTACT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.