Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006038

Physical Location & Seq

Genomic Coordinates Reverse (-)

11211569 .. 11213268

Gene Structure 1700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G188100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATTTCTTAGGCAACAAAAAGACACTGATCATTGTGCTACTCTTTGTATCTGCTGCTGTTCTAGCACAGAGTAAGGGAACTTCAGATATCAAAGTTTGCTACGGCCGGAAAAGCCGCTGCTTTCTCAAGCAGATACCCTGCCCAAAGGAATGTCCATTTGCTTCACCAACAGACAAGAACGCTAAAATTTGCTACCTCAACTGTGACTCGCCCATATGCAAAGCTGAGTGCAAAAAGCGCAAGCCTAATTGCGATGGCCCTGGATCAGCATGCATGGACCCTCGCTTCATTGGTGGAGATGGCATTGTCTTTTACTTCCACGGCAAGAAAAATGAGTACTTCAGCTTAGTTTCTGATCCCAACCTCCAAATCAATGCCCGGTTCATTGGTCTCCGCCCTGAAGGACGAACCAGGGACTATACTTGGATTCAGGCCCTCGGACTCCTTTTTGACTCTAACAGCTTCTCCCTTGAGGCCACCAAAGCATCAGCATGGGATGATGAAATTGACCTCTTGACATTCACTTACAATGGAGAGGAGCTAGTCATCCCAGAATCCCATCTCTCTGTGTGGCAATCTCCAGGCAATGTCATTAGAGTGGAGCGAACATCAAGCAAGAACAGTGTCTTAATCACTCTCCCAGAAGTTGCTGAGATTTCAGTAAATGTGGTGCCTGTGACAAAGGAAGATGACAGGATCCACAATTATCAGATACCATCAGATGACTGTTTTGCTCACCTGGAAGTACAGTTCAGATTCTATGGCCTATCCTCAAATGTTGAAGGAGTGCTTGGAAGGACTTACCAGCCAGATTTCAAGAACCCAGCAAAGCCTGGAGTAGCTATGCCAGTGGTTGGTGGTGAACAAAAGTACAGAACAACATCACTTGTCTCAGCAGATTGCATTGCTTGTGTGTTCGCTCAATCTGGGAAGCTGGACCAAACAGATTCAAGGGTGATGGATTACGGAAAGCTCGATTGTACTGGTAATTCCTTCGGCGGAAATGGAATAGTTTGCAGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

343

Amino Acids

37.8

Weight (kDa)

7.4

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54890
fragaria_vesca	FvH4_3g20790 FvH4_3g20800
malus_domestica	MD03G1220800.v1.1 MD03G1221100.v1.1 MD03G1221200.v1.1 MD11G1238500.v1.1 MD11G1238600.v1.1
prunus_persica	Prupe.4G188100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0035081 RchiOBHm_Chr5g0035091
rosa_laevigata	RLG00000033593 RLG00000033595
rosa_multiflora	Rmu_sc0000879.1_g000014 Rmu_sc0000879.1_g000027 Rmu_sc0005362.1_g000012 Rmu_sc0005362.1_g000027
rosa_roxburghii	Rroxscaffold_1G00045330
rosa_rugosa	Rorug05G0149700 Rorug05G0149800
rosa_samantha	Rh5AG242700 Rh5AG242800 Rh5BG242300 Rh5CG273800 Rh5DG250900
rosa_wichuraiana	Rw5G022170 Rw5G022190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	857
AciI	CCGC	3 cut(s)	118, 397, 1002
AclWI	GGATC	4 cut(s)	274, 353, 694, 707
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	189
AcuI	CTGAAG	3 cut(s)	69, 328, 423
AfaI	GTAC	4 cut(s)	341, 750, 875, 985
AfiI	CCNNNNNNNGG	1 cut(s)	857
AgsI	TTSAA	3 cut(s)	785, 820, 954
AjnI	CCWGG	5 cut(s)	262, 413, 583, 741, 835
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AloI	GAACNNNNNNTCC	2 cut(s)	737, 769
AluBI	AGCT	7 cut(s)	227, 348, 465, 544, 845, 937, 976
AluI	AGCT	7 cut(s)	227, 348, 465, 544, 845, 937, 976
Alw26I	GTCTC	2 cut(s)	398, 898
AlwI	GGATC	4 cut(s)	274, 353, 694, 707
AoxI	GGCC	5 cut(s)	106, 259, 435, 477, 766
ApeKI	GCWGC	2 cut(s)	56, 120
ApoI	RAATTY	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	4 cut(s)	260, 280, 436, 940
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	4 cut(s)	159, 731, 875, 970
AvaII	GGWCC	2 cut(s)	280, 940
BamHI	GGATCC	1 cut(s)	699
BanI	GGYRCC	1 cut(s)	673
BarI	GAAGNNNNNNTAC	2 cut(s)	67, 99
BbvI	GCAGC	2 cut(s)	43, 107
BccI	CCATC	5 cut(s)	251, 296, 570, 727, 955
BceAI	ACGGC	2 cut(s)	121, 340
BciT130I	CCWGG	5 cut(s)	264, 415, 585, 743, 837
BclI	TGATCA	1 cut(s)	30
BcnI	CCSGG	1 cut(s)	382
BcoDI	GTCTC	2 cut(s)	398, 898
BfaI	CTAG	2 cut(s)	65, 545
BisI	GCNGC	3 cut(s)	57, 118, 121
BlsI	GCNGC	3 cut(s)	58, 119, 122
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	6 cut(s)	264, 382, 415, 585, 743, 837
Bme18I	GGWCC	2 cut(s)	280, 940
BmgT120I	GGNCC	4 cut(s)	260, 280, 436, 940
BmiI	GGNNCC	3 cut(s)	282, 675, 701
BmrFI	CCNGG	6 cut(s)	264, 382, 415, 585, 743, 837
BmsI	GCATC	1 cut(s)	497
BpmI	CTGGAG	2 cut(s)	567, 858
BpuEI	CTTGAG	2 cut(s)	113, 494
BpuMI	CCSGG	1 cut(s)	382
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	4 cut(s)	262, 322, 414, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	857
Bse1I	ACTGG	2 cut(s)	851, 991
Bse3DI	GCAATG	2 cut(s)	595, 906
BseBI	CCWGG	5 cut(s)	264, 415, 585, 743, 837
BseDI	CCNNGG	4 cut(s)	262, 322, 414, 439
BseGI	GGATG	2 cut(s)	505, 549
BseLI	CCNNNNNNNGG	1 cut(s)	857
BseMI	GCAATG	2 cut(s)	595, 906
BseMII	CTCAG	3 cut(s)	219, 645, 909
BseNI	ACTGG	2 cut(s)	851, 991
BseRI	GAGGAG	1 cut(s)	554
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	43, 107
BseYI	CCCAGC	1 cut(s)	826
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	5 cut(s)	108, 261, 437, 479, 768
BshNI	GGYRCC	1 cut(s)	673
BsiEI	CGRYCG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	109, 382
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	857
BsmAI	GTCTC	2 cut(s)	398, 898
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	5 cut(s)	108, 261, 437, 479, 768
Bso31I	GGTCTC	1 cut(s)	398
Bsp143I	GATC	4 cut(s)	30, 266, 358, 699
BspACI	CCGC	3 cut(s)	118, 397, 1002
BspANI	GGCC	5 cut(s)	108, 261, 437, 479, 768
BspCNI	CTCAG	3 cut(s)	220, 646, 908
BspLI	GGNNCC	3 cut(s)	282, 675, 701
BspPI	GGATC	4 cut(s)	274, 353, 694, 707
BspT107I	GGYRCC	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	2 cut(s)	595, 906
BsrI	ACTGG	2 cut(s)	851, 991
BssECI	CCNNGG	4 cut(s)	262, 322, 414, 439
BssMI	GATC	4 cut(s)	30, 266, 358, 699
Bst2UI	CCWGG	5 cut(s)	264, 415, 585, 743, 837
Bst4CI	ACNGT	4 cut(s)	206, 626, 731, 753
BstC8I	GCNNGC	2 cut(s)	245, 274
BstDEI	CTNAG	5 cut(s)	10, 228, 349, 654, 895
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	2 cut(s)	505, 549
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	4 cut(s)	33, 269, 361, 702
BstMAI	GTCTC	2 cut(s)	398, 898
BstMBI	GATC	4 cut(s)	30, 266, 358, 699
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 114, 240, 485
BstNI	CCWGG	5 cut(s)	264, 415, 585, 743, 837
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	6 cut(s)	262, 380, 413, 583, 741, 835
BstV1I	GCAGC	2 cut(s)	43, 107
BstX2I	RGATCY	1 cut(s)	699
BstYI	RGATCY	1 cut(s)	699
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	5 cut(s)	108, 261, 437, 479, 768
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	505, 549
BtsIMutI	CAGTG	3 cut(s)	26, 631, 858
Cac8I	GCNNGC	2 cut(s)	245, 274
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	4 cut(s)	260, 280, 436, 940
Csp6I	GTAC	4 cut(s)	340, 749, 874, 984
CviAII	CATG	3 cut(s)	273, 277, 495
CviQI	GTAC	4 cut(s)	340, 749, 874, 984
DdeI	CTNAG	5 cut(s)	10, 228, 349, 654, 895
DpnI	GATC	4 cut(s)	32, 268, 360, 701
DpnII	GATC	4 cut(s)	30, 266, 358, 699
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
EciI	GGCGGA	2 cut(s)	386, 1017
EclXI	CGGCCG	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	280, 940
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	3 cut(s)	69, 328, 423
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	5 cut(s)	262, 413, 583, 741, 835
EcoRV	GATATC	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	278
FaeI	CATG	3 cut(s)	276, 280, 498
FaiI	YATR	8 cut(s)	218, 220, 274, 278, 423, 496, 765, 848
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	3 cut(s)	272, 276, 494
FauNDI	CATATG	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	57, 118, 121
FokI	GGATG	2 cut(s)	512, 536
Fsp4HI	GCNGC	3 cut(s)	57, 118, 121
FspBI	CTAG	2 cut(s)	65, 545
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	3 cut(s)	57, 118, 121
GsaI	CCCAGC	1 cut(s)	830
GsuI	CTGGAG	2 cut(s)	567, 858
HaeIII	GGCC	5 cut(s)	108, 261, 437, 479, 768
HapII	CCGG	2 cut(s)	109, 382
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	276, 280, 498
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	7 cut(s)	209, 430, 444, 455, 557, 759, 950
HpaII	CCGG	2 cut(s)	109, 382
HphI	GGTGA	4 cut(s)	159, 731, 875, 970
Hpy166II	GTNNAC	1 cut(s)	866
Hpy188I	TCNGA	6 cut(s)	88, 358, 443, 714, 724, 758
Hpy188III	TCNNGA	2 cut(s)	517, 820
Hpy8I	GTNNAC	1 cut(s)	866
HpyAV	CCTTC	4 cut(s)	398, 779, 792, 1006
HpyCH4III	ACNGT	4 cut(s)	206, 626, 731, 753
HpyCH4V	TGCA	5 cut(s)	222, 234, 276, 906, 1020
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 114, 240, 485
HpyF3I	CTNAG	5 cut(s)	10, 228, 349, 654, 895
Hsp92II	CATG	3 cut(s)	276, 280, 498
HspAI	GCGC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	30, 266, 358, 699
LmnI	GCTCC	2 cut(s)	541, 604
Lsp1109I	GCAGC	2 cut(s)	43, 107
LweI	GCATC	1 cut(s)	497
MaeI	CTAG	2 cut(s)	65, 545
MaeIII	GTNAC	2 cut(s)	206, 679
MalI	GATC	4 cut(s)	32, 268, 360, 701
MboI	GATC	4 cut(s)	30, 266, 358, 699
MboII	GAAGA	1 cut(s)	701
MflI	RGATCY	1 cut(s)	699
MluCI	AATT	5 cut(s)	189, 250, 507, 706, 991
MlyI	GAGTC	3 cut(s)	203, 438, 449
MnlI	CCTC	8 cut(s)	209, 294, 377, 449, 469, 524, 532, 784
Mph1103I	ATGCAT	1 cut(s)	278
MseI	TTAA	1 cut(s)	632
MslI	CAYNNNNRTG	2 cut(s)	493, 599
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	2 cut(s)	109, 382
MspR9I	CCNGG	6 cut(s)	264, 382, 415, 585, 743, 837
MvaI	CCWGG	5 cut(s)	264, 415, 585, 743, 837
MwoI	GCNNNNNNNGC	4 cut(s)	65, 114, 240, 485
NciI	CCSGG	1 cut(s)	382
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	4 cut(s)	30, 266, 358, 699
NlaIII	CATG	3 cut(s)	276, 280, 498
NlaIV	GGNNCC	3 cut(s)	282, 675, 701
NmuCI	GTSAC	2 cut(s)	206, 679
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	1 cut(s)	276
PaeI	GCATGC	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	975
PfeI	GAWTC	4 cut(s)	430, 557, 759, 950
PflMI	CCANNNNNTGG	1 cut(s)	857
PkrI	GCNGC	3 cut(s)	58, 119, 122
PleI	GAGTC	3 cut(s)	203, 438, 449
PpsI	GAGTC	3 cut(s)	203, 438, 449
Psp6I	CCWGG	5 cut(s)	262, 413, 583, 741, 835
PspFI	CCCAGC	1 cut(s)	826
PspGI	CCWGG	5 cut(s)	262, 413, 583, 741, 835
PspN4I	GGNNCC	3 cut(s)	282, 675, 701
PspPI	GGNCC	4 cut(s)	260, 280, 436, 940
PsuI	RGATCY	1 cut(s)	699
RsaI	GTAC	4 cut(s)	341, 750, 875, 985
RsaNI	GTAC	4 cut(s)	340, 749, 874, 984
RseI	CAYNNNNRTG	2 cut(s)	493, 599
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	3 cut(s)	57, 118, 121
Sau3AI	GATC	4 cut(s)	30, 266, 358, 699
Sau96I	GGNCC	4 cut(s)	260, 280, 436, 940
ScaI	AGTACT	1 cut(s)	341
SchI	GAGTC	3 cut(s)	203, 438, 449
ScrFI	CCNGG	6 cut(s)	264, 382, 415, 585, 743, 837
SfaNI	GCATC	1 cut(s)	497
SinI	GGWCC	2 cut(s)	280, 940
SmiMI	CAYNNNNRTG	2 cut(s)	493, 599
SmlI	CTYRAG	2 cut(s)	128, 473
SmoI	CTYRAG	2 cut(s)	128, 473
SphI	GCATGC	1 cut(s)	276
Sse9I	AATT	5 cut(s)	189, 250, 507, 706, 991
SsiI	CCGC	3 cut(s)	118, 397, 1002
SspMI	CTAG	2 cut(s)	65, 545
StyD4I	CCNGG	6 cut(s)	262, 380, 413, 583, 741, 835
TaaI	ACNGT	4 cut(s)	206, 626, 731, 753
TaqI	TCGA	1 cut(s)	978
TasI	AATT	5 cut(s)	189, 250, 507, 706, 991
TatI	WGTACW	4 cut(s)	339, 748, 873, 983
TauI	GCSGC	1 cut(s)	120
TfiI	GAWTC	4 cut(s)	430, 557, 759, 950
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	3 cut(s)	33, 631, 858
TseFI	GTSAC	2 cut(s)	206, 679
TseI	GCWGC	2 cut(s)	56, 120
Tsp45I	GTSAC	2 cut(s)	206, 679
TspDTI	ATGAA	3 cut(s)	280, 376, 519
TspGWI	ACGGA	1 cut(s)	984
TspRI	CASTG	3 cut(s)	33, 631, 858
Van91I	CCANNNNNTGG	1 cut(s)	857
VpaK11BI	GGWCC	2 cut(s)	280, 940
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	1 cut(s)	276
XspI	CTAG	2 cut(s)	65, 545
ZrmI	AGTACT	1 cut(s)	341
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.