Rorug05G0149800

Root cap

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006038
Physical Location & Seq
Reverse (-)
13888986 .. 13889600
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0149800.1

Sequence Viewer

Length: 615 bp
ATGATTACCAAAAAACCAAAAACAAGGACAGTGGAAGAGGCAATATCAACCTTGGAAGGTTCAGGTTGGGCATGGCTTCCAAGGGACATTCGGGATTTGATTCTCGAAAGGTTGATACAAATCAAAGACTATATCCGATTTGGTGTGGTTTGCAAGCATTGGCGATCAATTGCTCTACACCAAAATATGCAGCCAAAACTCGAATCATGTCACAAACTGCCTCCTCTAATGATTCTTATAAACCAACATGACAACGGTACTAGAAGTGTTGCCTTGCGTAGTGGCACACCAGACAAGACTAGCAGGTTTAAGCTGAAATTGAATGGTTTCCCTATTTACGATTTGACTAAGGATTGTGGTTCTTCTCATGGTTGGTTGGCTTATGCAAATGCCAATTTGGAGGTAACCCTCTTAAACCCTTTCACCGGATGCACAATTACCCTTCCACCAGTACGCACAACACATGGCCATTACATCAAGAATGTTGTATTGTCTGCAGACCCTTCTTTGTGCCCTGATGATTTTGAAGCTCTGGTAATGTATATGCATTGCGCTTTCACCAAACTGATCAGACTAGCCCATTTTAAGTCAGGCAAGATGCTTGGACTCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Root_cap

Protein Analysis

204

Amino Acids

23.05

Weight (kDa)

9.37

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 100 - 184 9.2e-14 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 294
AcoI YGGCCR 1 cut(s) 466
AfaI GTAC 2 cut(s) 259, 453
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 2 cut(s) 322, 527
AluBI AGCT 2 cut(s) 313, 530
AluI AGCT 2 cut(s) 313, 530
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 415, 550
BaeGI GKGCMC 1 cut(s) 515
BalI TGGCCA 1 cut(s) 468
BbvI GCAGC 1 cut(s) 202
BclI TGATCA 1 cut(s) 567
BfaI CTAG 3 cut(s) 261, 300, 575
BfmI CTRYAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 1 cut(s) 191
BlsI GCNGC 1 cut(s) 192
BmsI GCATC 2 cut(s) 419, 588
BsaBI GATNNNNATC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 51, 80
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 51, 80
BseGI GGATG 1 cut(s) 434
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 1 cut(s) 547
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 515
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 1 cut(s) 468
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 515
Bsp143I GATC 2 cut(s) 164, 567
BspANI GGCC 1 cut(s) 468
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 547
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 51, 80
BssMI GATC 2 cut(s) 164, 567
BssT1I CCWWGG 2 cut(s) 51, 80
Bst4CI ACNGT 2 cut(s) 31, 257
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 348
BstEII GGTNACC 1 cut(s) 403
BstF5I GGATG 1 cut(s) 434
BstHHI GCGC 1 cut(s) 554
BstKTI GATC 2 cut(s) 167, 570
BstMBI GATC 2 cut(s) 164, 567
BstPI GGTNACC 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 515
BstV1I GCAGC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 468
BtsCI GGATG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 155
CfoI GCGC 1 cut(s) 554
Csp6I GTAC 2 cut(s) 258, 452
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 5 cut(s) 72, 207, 248, 368, 464
CviJI RGCY 7 cut(s) 76, 193, 313, 380, 468, 530, 578
CviKI_1 RGCY 7 cut(s) 76, 193, 313, 380, 468, 530, 578
CviQI GTAC 2 cut(s) 258, 452
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 166, 569
DpnII GATC 2 cut(s) 164, 567
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 51, 80
Eco91I GGTNACC 1 cut(s) 403
EcoO65I GGTNACC 1 cut(s) 403
EcoT14I CCWWGG 2 cut(s) 51, 80
EcoT22I ATGCAT 1 cut(s) 549
ErhI CCWWGG 2 cut(s) 51, 80
FaeI CATG 5 cut(s) 75, 210, 251, 371, 467
FaqI GGGAC 1 cut(s) 98
FatI CATG 5 cut(s) 71, 206, 247, 367, 463
FbaI TGATCA 1 cut(s) 567
Fnu4HI GCNGC 1 cut(s) 191
FokI GGATG 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 3 cut(s) 261, 300, 575
GlaI GCGC 1 cut(s) 553
GluI GCNGC 1 cut(s) 191
HaeIII GGCC 1 cut(s) 468
HapII CCGG 1 cut(s) 426
HhaI GCGC 1 cut(s) 554
Hin1II CATG 5 cut(s) 75, 210, 251, 371, 467
Hin6I GCGC 1 cut(s) 552
HinP1I GCGC 1 cut(s) 552
HinfI GANTC 4 cut(s) 100, 203, 232, 606
HpaII CCGG 1 cut(s) 426
HphI GGTGA 2 cut(s) 415, 550
Hpy188I TCNGA 2 cut(s) 137, 572
Hpy188III TCNNGA 3 cut(s) 92, 104, 478
HpyAV CCTTC 3 cut(s) 50, 452, 513
HpyCH4III ACNGT 2 cut(s) 31, 257
HpyCH4V TGCA 6 cut(s) 153, 190, 386, 432, 497, 547
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 5 cut(s) 75, 210, 251, 371, 467
HspAI GCGC 1 cut(s) 552
Ksp22I TGATCA 1 cut(s) 567
Kzo9I GATC 2 cut(s) 164, 567
LpnPI CCDG 8 cut(s) 48, 289, 303, 439, 462, 518, 528, 576
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 2 cut(s) 419, 588
MaeI CTAG 3 cut(s) 261, 300, 575
MaeIII GTNAC 2 cut(s) 209, 403
MalI GATC 2 cut(s) 166, 569
MboI GATC 2 cut(s) 164, 567
MboII GAAGA 2 cut(s) 47, 354
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 515
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 4 cut(s) 168, 317, 394, 435
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 1 cut(s) 600
MnlI CCTC 5 cut(s) 31, 231, 234, 394, 419
Mox20I TGGCCA 1 cut(s) 468
Mph1103I ATGCAT 1 cut(s) 549
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 468
MseI TTAA 3 cut(s) 309, 413, 585
Msp20I TGGCCA 1 cut(s) 468
MspI CCGG 1 cut(s) 426
MunI CAATTG 1 cut(s) 168
NdeII GATC 2 cut(s) 164, 567
NlaIII CATG 5 cut(s) 75, 210, 251, 371, 467
NmuCI GTSAC 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 100, 203, 232
PkrI GCNGC 1 cut(s) 192
PleI GAGTC 1 cut(s) 600
PpsI GAGTC 1 cut(s) 600
PsiI TTATAA 1 cut(s) 239
PspEI GGTNACC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 499
RsaI GTAC 2 cut(s) 259, 453
RsaNI GTAC 2 cut(s) 258, 452
SaqAI TTAA 3 cut(s) 309, 413, 585
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 164, 567
SchI GAGTC 1 cut(s) 600
SduI GDGCHC 1 cut(s) 515
SetI ASST 8 cut(s) 53, 61, 67, 113, 308, 315, 405, 532
SfaNI GCATC 2 cut(s) 419, 588
SfcI CTRYAG 1 cut(s) 495
Sse9I AATT 4 cut(s) 168, 317, 394, 435
SspMI CTAG 3 cut(s) 261, 300, 575
StyI CCWWGG 2 cut(s) 51, 80
TaaI ACNGT 2 cut(s) 31, 257
TaqI TCGA 2 cut(s) 105, 201
TasI AATT 4 cut(s) 168, 317, 394, 435
TfiI GAWTC 3 cut(s) 100, 203, 232
Tru1I TTAA 3 cut(s) 309, 413, 585
Tru9I TTAA 3 cut(s) 309, 413, 585
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 209
TspRI CASTG 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 3 cut(s) 261, 300, 575
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.