Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000879.1

Orthogroup ID

OG0006038

Physical Location & Seq

Genomic Coordinates Forward (+)

73595 .. 75882

Gene Structure 2288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000879.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggactacaggaaatggtttagaatgcgaagagacaaatttgaaataaaaaacgaaggtcagacggacgaatttagcagcttagtttccgatcccaacctccaaatcaatgctcgcttcattggtctccgccctgaaggccgaagcagggactatacctggattcaagcccttggactcctcttcgattcgaacagcttcacactcgaggccaccccatcagcaacatgggacgatgagattgaccacttgaaagtggagaggacttcgagcaagaacagtgtcttagtcactctcccagaagttgctgaaatttcagtcaatgtggtacctgtgacaaaggaagatgataagatccacaattatcaaataccatcggatgactgttttgctcacctggaagcacagttcagattctacggtctgtcatcaaatgttgaaggagtacttggaaggacttaccagccagatttcaagaacccggcaaaggctggagtagccatgccggtagttggaggtgaatacaagtacaaaacaacatcactggtctctgcggattgttttgcttgtgtgttcacccaggccgggatgttggatcagacggattcaagagtgatggattacggaaagctagactgcaccggtaacaccttcagtgggaatggaatagtttgcaggaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Root_cap

Protein Analysis

227

Amino Acids

25.57

Weight (kDa)

5.17

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54890
fragaria_vesca	FvH4_3g20790 FvH4_3g20800
malus_domestica	MD03G1220800.v1.1 MD03G1221100.v1.1 MD03G1221200.v1.1 MD11G1238500.v1.1 MD11G1238600.v1.1
prunus_persica	Prupe.4G188100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0035081 RchiOBHm_Chr5g0035091
rosa_laevigata	RLG00000033593 RLG00000033595
rosa_multiflora	Rmu_sc0000879.1_g000014 Rmu_sc0000879.1_g000027 Rmu_sc0005362.1_g000012 Rmu_sc0005362.1_g000027
rosa_roxburghii	Rroxscaffold_1G00045330
rosa_rugosa	Rorug05G0149700 Rorug05G0149800
rosa_samantha	Rh5AG242700 Rh5AG242800 Rh5BG242300 Rh5CG273800 Rh5DG250900
rosa_wichuraiana	Rw5G022170 Rw5G022190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	2 cut(s)	130, 554
AclWI	GGATC	3 cut(s)	86, 349, 603
AcsI	RAATTY	3 cut(s)	38, 71, 312
AcuI	CTGAAG	2 cut(s)	156, 637
AfaI	GTAC	3 cut(s)	330, 447, 530
AfiI	CCNNNNNNNGG	5 cut(s)	148, 487, 512, 585, 657
AgeI	ACCGGT	1 cut(s)	641
AgsI	TTSAA	6 cut(s)	44, 167, 253, 440, 475, 609
AjnI	CCWGG	3 cut(s)	158, 396, 579
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	3 cut(s)	81, 198, 631
AluI	AGCT	3 cut(s)	81, 198, 631
Alw26I	GTCTC	3 cut(s)	27, 131, 553
AlwI	GGATC	3 cut(s)	86, 349, 603
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	3 cut(s)	139, 210, 582
ApeKI	GCWGC	1 cut(s)	78
ApoI	RAATTY	3 cut(s)	38, 71, 312
AsiGI	ACCGGT	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	197
Asp718I	GGTACC	1 cut(s)	328
AsuC2I	CCSGG	2 cut(s)	482, 586
AsuHPI	GGTGA	3 cut(s)	386, 530, 568
AsuII	TTCGAA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	206
BanI	GGYRCC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	3 cut(s)	226, 382, 610
BciT130I	CCWGG	3 cut(s)	160, 398, 581
BcnI	CCSGG	2 cut(s)	482, 586
BcoDI	GTCTC	3 cut(s)	27, 131, 553
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	1 cut(s)	7
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
BmcAI	AGTACT	1 cut(s)	447
Bme1390I	CCNGG	5 cut(s)	160, 398, 482, 581, 586
BmeT110I	CYCGRG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	5 cut(s)	160, 398, 482, 581, 586
BpmI	CTGGAG	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	482, 586
BsaI	GGTCTC	2 cut(s)	131, 553
BsaJI	CCNNGG	2 cut(s)	172, 579
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	5 cut(s)	148, 487, 512, 585, 657
Bse118I	RCCGGY	2 cut(s)	505, 641
Bse1I	ACTGG	1 cut(s)	549
BseBI	CCWGG	3 cut(s)	160, 398, 581
BseDI	CCNNGG	2 cut(s)	172, 579
BseGI	GGATG	2 cut(s)	385, 594
BseLI	CCNNNNNNNGG	5 cut(s)	148, 487, 512, 585, 657
BseNI	ACTGG	1 cut(s)	549
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	622
BshFI	GGCC	3 cut(s)	141, 212, 584
BshNI	GGYRCC	1 cut(s)	328
BshTI	ACCGGT	1 cut(s)	641
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	4 cut(s)	482, 506, 585, 642
BslFI	GGGAC	2 cut(s)	164, 245
BslI	CCNNNNNNNGG	5 cut(s)	148, 487, 512, 585, 657
BsmAI	GTCTC	3 cut(s)	27, 131, 553
BsmFI	GGGAC	2 cut(s)	164, 245
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	141, 212, 584
Bso31I	GGTCTC	2 cut(s)	131, 553
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	91, 354, 595
BspACI	CCGC	2 cut(s)	130, 554
BspANI	GGCC	3 cut(s)	141, 212, 584
BspLI	GGNNCC	1 cut(s)	330
BspPI	GGATC	3 cut(s)	86, 349, 603
BspT104I	TTCGAA	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	2 cut(s)	131, 553
BsrFI	RCCGGY	2 cut(s)	505, 641
BsrI	ACTGG	1 cut(s)	549
BssAI	RCCGGY	2 cut(s)	505, 641
BssECI	CCNNGG	2 cut(s)	172, 579
BssMI	GATC	3 cut(s)	91, 354, 595
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	3 cut(s)	160, 398, 581
Bst4CI	ACNGT	4 cut(s)	281, 386, 408, 422
Bst6I	CTCTTC	2 cut(s)	25, 188
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	82, 286
BstF5I	GGATG	2 cut(s)	385, 594
BstKTI	GATC	3 cut(s)	94, 357, 598
BstMAI	GTCTC	3 cut(s)	27, 131, 553
BstMBI	GATC	3 cut(s)	91, 354, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 497
BstNI	CCWGG	3 cut(s)	160, 398, 581
BstSCI	CCNGG	5 cut(s)	158, 396, 480, 579, 584
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	141, 212, 584
BtsCI	GGATG	2 cut(s)	385, 594
BtsIMutI	CAGTG	3 cut(s)	286, 542, 661
Cac8I	GCNNGC	1 cut(s)	115
Cfr10I	RCCGGY	2 cut(s)	505, 641
Csp6I	GTAC	3 cut(s)	329, 446, 529
CspAI	ACCGGT	1 cut(s)	641
CviAII	CATG	2 cut(s)	228, 502
CviQI	GTAC	3 cut(s)	329, 446, 529
DdeI	CTNAG	2 cut(s)	82, 286
DpnI	GATC	3 cut(s)	93, 356, 597
DpnII	GATC	3 cut(s)	91, 354, 595
Eam1104I	CTCTTC	2 cut(s)	25, 188
EarI	CTCTTC	2 cut(s)	25, 188
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	172
Eco31I	GGTCTC	2 cut(s)	131, 553
Eco57I	CTGAAG	2 cut(s)	156, 637
Eco88I	CYCGRG	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	158, 396, 579
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	2 cut(s)	231, 505
FaiI	YATR	3 cut(s)	156, 229, 503
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	2 cut(s)	164, 245
FatI	CATG	2 cut(s)	227, 501
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	2 cut(s)	392, 601
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	3 cut(s)	141, 212, 584
HapII	CCGG	4 cut(s)	482, 506, 585, 642
Hin1II	CATG	2 cut(s)	231, 505
HinfI	GANTC	5 cut(s)	163, 177, 188, 414, 605
HpaII	CCGG	4 cut(s)	482, 506, 585, 642
HphI	GGTGA	3 cut(s)	386, 530, 568
Hpy166II	GTNNAC	1 cut(s)	576
Hpy188I	TCNGA	5 cut(s)	63, 91, 379, 413, 600
Hpy188III	TCNNGA	2 cut(s)	475, 609
Hpy8I	GTNNAC	1 cut(s)	576
HpyAV	CCTTC	5 cut(s)	50, 131, 434, 447, 661
HpyCH4III	ACNGT	4 cut(s)	281, 386, 408, 422
HpyCH4V	TGCA	2 cut(s)	639, 675
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 497
HpyF3I	CTNAG	2 cut(s)	82, 286
Hsp92II	CATG	2 cut(s)	231, 505
KpnI	GGTACC	1 cut(s)	332
Kzo9I	GATC	3 cut(s)	91, 354, 595
Lsp1109I	GCAGC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	632
MaeIII	GTNAC	3 cut(s)	289, 334, 644
MalI	GATC	3 cut(s)	93, 356, 597
MboI	GATC	3 cut(s)	91, 354, 595
MboII	GAAGA	3 cut(s)	42, 175, 356
MflI	RGATCY	1 cut(s)	354
MluCI	AATT	4 cut(s)	38, 71, 312, 361
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	493, 573
MnlI	CCTC	5 cut(s)	110, 191, 202, 255, 509
MroXI	GAANNNNTTC	1 cut(s)	197
MspI	CCGG	4 cut(s)	482, 506, 585, 642
MspR9I	CCNGG	5 cut(s)	160, 398, 482, 581, 586
Mva1269I	GAATGC	1 cut(s)	30
MvaI	CCWGG	3 cut(s)	160, 398, 581
MwoI	GCNNNNNNNGC	2 cut(s)	138, 497
NciI	CCSGG	2 cut(s)	482, 586
NdeII	GATC	3 cut(s)	91, 354, 595
NlaIII	CATG	2 cut(s)	231, 505
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	289, 334
NspV	TTCGAA	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	206
PctI	GAATGC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	4 cut(s)	163, 188, 414, 605
PinAI	ACCGGT	1 cut(s)	641
PkrI	GCNGC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp6I	CCWGG	3 cut(s)	158, 396, 579
PspGI	CCWGG	3 cut(s)	158, 396, 579
PspN4I	GGNNCC	1 cut(s)	330
PspXI	VCTCGAGB	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	3 cut(s)	330, 447, 530
RsaNI	GTAC	3 cut(s)	329, 446, 529
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	3 cut(s)	91, 354, 595
ScaI	AGTACT	1 cut(s)	447
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	5 cut(s)	160, 398, 482, 581, 586
SfcI	CTRYAG	1 cut(s)	7
Sfr274I	CTCGAG	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	38, 71, 312, 361
SsiI	CCGC	2 cut(s)	130, 554
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	5 cut(s)	158, 396, 480, 579, 584
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	4 cut(s)	281, 386, 408, 422
TaqI	TCGA	4 cut(s)	186, 191, 207, 269
TasI	AATT	4 cut(s)	38, 71, 312, 361
TatI	WGTACW	2 cut(s)	445, 528
TfiI	GAWTC	4 cut(s)	163, 188, 414, 605
TscAI	CASTG	3 cut(s)	286, 549, 661
TseFI	GTSAC	2 cut(s)	289, 334
TseI	GCWGC	1 cut(s)	78
Tsp45I	GTSAC	2 cut(s)	289, 334
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	3 cut(s)	80, 617, 639
TspRI	CASTG	3 cut(s)	286, 549, 661
XapI	RAATTY	3 cut(s)	38, 71, 312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XhoI	CTCGAG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	632
ZrmI	AGTACT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.