FvH4_3g21020

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015195
Physical Location & Seq
Reverse (-)
14037567 .. 14038895
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21020.t1

Sequence Viewer

Length: 780 bp
ATGTCCTCCATGCTTATGGCAGCCGCTGCTAGCTCCAGCACTCTTCTTAGACCAAACACCAACTCTCTTAGGGATGTTGTTCCTATGGGACCTGGGAAATACACCATGGGGAATGAATTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGACCCTTTTCTGCTCAGACTCCTTCATACCTGACCGGAGAATTCCCCGGCGACTACGGATGGGACACTGCAGGGTTGTCAGCTGACCCAGAAGCCTTTGCTAAGAACAGGGCTCTTGAGGTTATCCACGGGCGATGGGCAATGCTTGGAGCATTCGGGTGCATCACCCCAGAAGTACTTGAGAAATGGGTGAGAGTGGACTTCAAAGAACCAGTCTGGTTCAAAGCCGGAGCTCAAATCTTTTCAGAGGGTGGTCTTGACTATTTGGGCAACCCCAACCTTGTTCATGCTCAGAGCATCCTAGCAGTTCTTGGCTCCCAAGTCCTTCTCATGGGACTTGTTGAGGGATTCAGAATCAACGGCCTCGACGGAGTAGGGGAGGGCAATGATCTGTACCCCGGCGGCCAGTACTTTGACCCACTTGGCCTTGCTGATGACCCTGTCACATTTGCTGAGCTCAAGGTGAAGGAGATCAAGAATGGAAGACTAGCCATGTTCTCCATGTTTGGTTTCTTTGTCCAAGCCATTGTCACTGGCAAAGGTCCCCTAGAGAACCTCTTGGACCATCTTGACAACCCTGTAGCCAACAACGCTTGGGTCTACGCCACCAAGTTTGTGCCTGGATCGTAA

Protein Analysis

260

Amino Acids

28.05

Weight (kDa)

4.89

Isoelectric Point (pI)

20.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 58 - 226 1.5e-50 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54270
fragaria_vesca FvH4_3g21020
malus_domestica MD03G1218900.v1.1 MD11G1236900.v1.1
prunus_persica Prupe.4G190500_v2.0.a1
pyrus_communis pycom03g16800 pycom11g20830
rosa_chinensis RchiOBHm_Chr5g0036051
rosa_laevigata RLG00000033661
rosa_multiflora Rmu_sc0001493.1_g000005
rosa_roxburghii Rroxscaffold_1G00044710
rosa_rugosa Rorug05G0152000
rosa_samantha Rh5AG246400 Rh5BG246700 Rh5DG255100
rosa_wichuraiana Rw5G022620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 750
AciI CCGC 2 cut(s) 24, 552
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 4 cut(s) 146, 327, 545, 560
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 2 cut(s) 355, 373
AjnI CCWGG 2 cut(s) 91, 769
AluBI AGCT 4 cut(s) 33, 233, 383, 607
AluI AGCT 4 cut(s) 33, 233, 383, 607
Alw21I GWGCWC 2 cut(s) 385, 609
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 3 cut(s) 511, 553, 574
ApeKI GCWGC 2 cut(s) 20, 26
ApoI RAATTY 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AspS9I GGNCC 5 cut(s) 89, 128, 152, 692, 712
AsuC2I CCSGG 2 cut(s) 198, 549
AsuHPI GGTGA 3 cut(s) 307, 352, 625
AsuNHI GCTAGC 1 cut(s) 29
AvaII GGWCC 5 cut(s) 89, 128, 152, 692, 712
BanII GRGCYC 3 cut(s) 265, 385, 609
BbsI GAAGAC 1 cut(s) 640
Bbv12I GWGCWC 2 cut(s) 385, 609
BbvI GCAGC 2 cut(s) 13, 32
BccI CCATC 3 cut(s) 204, 279, 723
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 2 cut(s) 93, 771
BcnI CCSGG 2 cut(s) 198, 549
BfaI CTAG 4 cut(s) 30, 452, 638, 698
BfmI CTRYAG 2 cut(s) 219, 729
BisI GCNGC 4 cut(s) 21, 24, 27, 553
BlpI GCTNAGC 1 cut(s) 603
BlsI GCNGC 4 cut(s) 22, 25, 28, 554
BmcAI AGTACT 3 cut(s) 146, 327, 560
Bme1390I CCNGG 4 cut(s) 93, 198, 549, 771
Bme18I GGWCC 5 cut(s) 89, 128, 152, 692, 712
BmgT120I GGNCC 5 cut(s) 89, 128, 152, 692, 712
BmiI GGNNCC 5 cut(s) 90, 153, 154, 466, 694
BmrFI CCNGG 4 cut(s) 93, 198, 549, 771
BmsI GCATC 2 cut(s) 321, 456
BmtI GCTAGC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 640
BpmI CTGGAG 1 cut(s) 19
Bpu1102I GCTNAGC 1 cut(s) 603
BpuEI CTTGAG 3 cut(s) 287, 350, 593
BpuMI CCSGG 2 cut(s) 198, 549
BsaJI CCNNGG 5 cut(s) 92, 105, 196, 277, 547
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 3 cut(s) 362, 556, 688
Bse3DI GCAATG 2 cut(s) 297, 541
BseBI CCWGG 2 cut(s) 93, 771
BseDI CCNNGG 5 cut(s) 92, 105, 196, 277, 547
BseGI GGATG 3 cut(s) 79, 215, 447
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 2 cut(s) 297, 541
BseMII CTCAG 3 cut(s) 179, 455, 594
BseNI ACTGG 3 cut(s) 362, 556, 688
BseXI GCAGC 2 cut(s) 13, 32
BshFI GGCC 3 cut(s) 513, 555, 576
BsiHKAI GWGCWC 2 cut(s) 385, 609
BsiSI CCGG 4 cut(s) 186, 198, 378, 549
BslFI GGGAC 5 cut(s) 102, 165, 227, 498, 678
BslI CCNNNNNNNGG 1 cut(s) 481
BsmFI GGGAC 5 cut(s) 102, 165, 227, 498, 678
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 3 cut(s) 513, 555, 576
Bsp1286I GDGCHC 3 cut(s) 265, 385, 609
Bsp143I GATC 3 cut(s) 538, 621, 773
Bsp1720I GCTNAGC 1 cut(s) 603
Bsp19I CCATGG 1 cut(s) 105
BspACI CCGC 2 cut(s) 24, 552
BspANI GGCC 3 cut(s) 513, 555, 576
BspCNI CTCAG 3 cut(s) 178, 454, 595
BspLI GGNNCC 5 cut(s) 90, 153, 154, 466, 694
BspMAI CTGCAG 1 cut(s) 223
BspOI GCTAGC 1 cut(s) 33
BsrDI GCAATG 2 cut(s) 297, 541
BsrI ACTGG 3 cut(s) 362, 556, 688
BssECI CCNNGG 5 cut(s) 92, 105, 196, 277, 547
BssMI GATC 3 cut(s) 538, 621, 773
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 93, 771
Bst6I CTCTTC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 6 cut(s) 47, 68, 165, 252, 441, 603
BstDSI CCRYGG 2 cut(s) 105, 277
BstF5I GGATG 3 cut(s) 79, 215, 447
BstKTI GATC 3 cut(s) 541, 624, 776
BstMBI GATC 3 cut(s) 538, 621, 773
BstMWI GCNNNNNNNGC 2 cut(s) 26, 740
BstNI CCWGG 2 cut(s) 93, 771
BstSCI CCNGG 4 cut(s) 91, 196, 547, 769
BstSFI CTRYAG 2 cut(s) 219, 729
BstV1I GCAGC 2 cut(s) 13, 32
BstV2I GAAGAC 1 cut(s) 640
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 3 cut(s) 513, 555, 576
BtgI CCRYGG 2 cut(s) 105, 277
BtgZI GCGATG 1 cut(s) 298
BtsCI GGATG 3 cut(s) 79, 215, 447
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 216, 681
Cac8I GCNNGC 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 5 cut(s) 89, 128, 152, 692, 712
Csp6I GTAC 4 cut(s) 145, 326, 544, 559
CspCI CAANNNNNGTGG 2 cut(s) 745, 780
CviAII CATG 6 cut(s) 10, 106, 437, 481, 643, 652
CviQI GTAC 4 cut(s) 145, 326, 544, 559
DdeI CTNAG 6 cut(s) 47, 68, 165, 252, 441, 603
DpnI GATC 3 cut(s) 540, 623, 775
DpnII GATC 3 cut(s) 538, 621, 773
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Ecl136II GAGCTC 2 cut(s) 383, 607
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 3 cut(s) 265, 385, 609
Eco47I GGWCC 5 cut(s) 89, 128, 152, 692, 712
Eco53kI GAGCTC 2 cut(s) 383, 607
EcoICRI GAGCTC 2 cut(s) 383, 607
EcoO109I RGGNCCY 3 cut(s) 89, 152, 692
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 91, 769
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 3 cut(s) 265, 385, 609
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 6 cut(s) 13, 109, 440, 484, 646, 655
FaqI GGGAC 5 cut(s) 102, 165, 227, 498, 678
FatI CATG 6 cut(s) 9, 105, 436, 480, 642, 651
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 4 cut(s) 21, 24, 27, 553
FokI GGATG 3 cut(s) 86, 222, 434
FriOI GRGCYC 3 cut(s) 265, 385, 609
Fsp4HI GCNGC 4 cut(s) 21, 24, 27, 553
FspBI CTAG 4 cut(s) 30, 452, 638, 698
GluI GCNGC 4 cut(s) 21, 24, 27, 553
GsuI CTGGAG 1 cut(s) 19
HaeIII GGCC 3 cut(s) 513, 555, 576
HapII CCGG 4 cut(s) 186, 198, 378, 549
Hin1II CATG 6 cut(s) 13, 109, 440, 484, 646, 655
HinfI GANTC 3 cut(s) 169, 498, 504
HpaII CCGG 4 cut(s) 186, 198, 378, 549
HphI GGTGA 3 cut(s) 307, 352, 625
Hpy166II GTNNAC 2 cut(s) 349, 751
Hpy188I TCNGA 4 cut(s) 168, 397, 444, 503
Hpy188III TCNNGA 4 cut(s) 266, 407, 625, 719
Hpy8I GTNNAC 2 cut(s) 349, 751
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 3 cut(s) 183, 485, 610
HpyCH4V TGCA 2 cut(s) 221, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 740
HpyF3I CTNAG 6 cut(s) 47, 68, 165, 252, 441, 603
Hsp92II CATG 6 cut(s) 13, 109, 440, 484, 646, 655
KflI GGGWCCC 1 cut(s) 152
Kzo9I GATC 3 cut(s) 538, 621, 773
LmnI GCTCC 4 cut(s) 38, 299, 380, 470
Lsp1109I GCAGC 2 cut(s) 13, 32
LweI GCATC 2 cut(s) 321, 456
MaeI CTAG 4 cut(s) 30, 452, 638, 698
MaeIII GTNAC 2 cut(s) 592, 679
MalI GATC 3 cut(s) 540, 623, 775
MboI GATC 3 cut(s) 538, 621, 773
MboII GAAGA 2 cut(s) 35, 645
MhlI GDGCHC 3 cut(s) 265, 385, 609
MluCI AATT 2 cut(s) 116, 191
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 7 cut(s) 16, 262, 391, 487, 523, 524, 716
MslI CAYNNNNRTG 2 cut(s) 14, 307
MspA1I CMGCKG 2 cut(s) 26, 233
MspI CCGG 4 cut(s) 186, 198, 378, 549
MspR9I CCNGG 4 cut(s) 93, 198, 549, 771
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 2 cut(s) 93, 771
MwoI GCNNNNNNNGC 2 cut(s) 26, 740
NciI CCSGG 2 cut(s) 198, 549
NcoI CCATGG 1 cut(s) 105
NdeII GATC 3 cut(s) 538, 621, 773
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 6 cut(s) 13, 109, 440, 484, 646, 655
NlaIV GGNNCC 5 cut(s) 90, 153, 154, 466, 694
NmuCI GTSAC 2 cut(s) 592, 679
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 498, 504
PflFI GACNNNGTC 1 cut(s) 590
PkrI GCNGC 4 cut(s) 22, 25, 28, 554
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PpuMI RGGWCCY 3 cut(s) 89, 152, 692
Psp124BI GAGCTC 2 cut(s) 385, 609
Psp5II RGGWCCY 3 cut(s) 89, 152, 692
Psp6I CCWGG 2 cut(s) 91, 769
PspGI CCWGG 2 cut(s) 91, 769
PspN4I GGNNCC 5 cut(s) 90, 153, 154, 466, 694
PspPI GGNCC 5 cut(s) 89, 128, 152, 692, 712
PspPPI RGGWCCY 3 cut(s) 89, 152, 692
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 26
PsyI GACNNNGTC 1 cut(s) 590
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 4 cut(s) 146, 327, 545, 560
RsaNI GTAC 4 cut(s) 145, 326, 544, 559
RseI CAYNNNNRTG 2 cut(s) 14, 307
SacI GAGCTC 2 cut(s) 385, 609
SatI GCNGC 4 cut(s) 21, 24, 27, 553
Sau3AI GATC 3 cut(s) 538, 621, 773
Sau96I GGNCC 5 cut(s) 89, 128, 152, 692, 712
ScaI AGTACT 3 cut(s) 146, 327, 560
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 4 cut(s) 93, 198, 549, 771
SduI GDGCHC 3 cut(s) 265, 385, 609
SfaNI GCATC 2 cut(s) 321, 456
SfcI CTRYAG 2 cut(s) 219, 729
SinI GGWCC 5 cut(s) 89, 128, 152, 692, 712
SmiMI CAYNNNNRTG 2 cut(s) 14, 307
SmlI CTYRAG 3 cut(s) 266, 329, 608
SmoI CTYRAG 3 cut(s) 266, 329, 608
Sse9I AATT 2 cut(s) 116, 191
SsiI CCGC 2 cut(s) 24, 552
SspMI CTAG 4 cut(s) 30, 452, 638, 698
SstI GAGCTC 2 cut(s) 385, 609
StyD4I CCNGG 4 cut(s) 91, 196, 547, 769
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 1 cut(s) 516
TasI AATT 2 cut(s) 116, 191
TatI WGTACW 3 cut(s) 144, 325, 558
TauI GCSGC 2 cut(s) 26, 555
TfiI GAWTC 2 cut(s) 498, 504
TscAI CASTG 2 cut(s) 223, 688
TseFI GTSAC 2 cut(s) 592, 679
TseI GCWGC 2 cut(s) 20, 26
Tsp45I GTSAC 2 cut(s) 592, 679
TspDTI ATGAA 3 cut(s) 129, 165, 425
TspGWI ACGGA 2 cut(s) 222, 534
TspRI CASTG 2 cut(s) 223, 688
Tth111I GACNNNGTC 1 cut(s) 590
VpaK11BI GGWCC 5 cut(s) 89, 128, 152, 692, 712
XapI RAATTY 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 750
XspI CTAG 4 cut(s) 30, 452, 638, 698
ZrmI AGTACT 3 cut(s) 146, 327, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.