Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0015195

Physical Location & Seq

Genomic Coordinates Forward (+)

17982232 .. 17982553

Gene Structure 322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGCAGCAGCTGCTAGCTCTAGCACTCTTCTAAGAACAACCCCATTTCTTGGCCAAAGCCGAGGACCAAGCTTCAACACTCTTAGAGATGTTGTGCCAATGGGCACTGGCAAATACACCATGAGTGAAGTATTTGGGACCCTTTTCTGCTCAGACTCCTTCGTACCTGAACGGAGAATTCCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009941 GO:0009987 GO:0010033 GO:0010119 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

63

Amino Acids

6.74

Weight (kDa)

10.02

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54270
fragaria_vesca	FvH4_3g21020
malus_domestica	MD03G1218900.v1.1 MD11G1236900.v1.1
prunus_persica	Prupe.4G190500_v2.0.a1
pyrus_communis	pycom03g16800 pycom11g20830
rosa_chinensis	RchiOBHm_Chr5g0036051
rosa_laevigata	RLG00000033661
rosa_multiflora	Rmu_sc0001493.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044710
rosa_rugosa	Rorug05G0152000
rosa_samantha	Rh5AG246400 Rh5BG246700 Rh5DG255100
rosa_wichuraiana	Rw5G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	177
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	3 cut(s)	11, 18, 72
AluI	AGCT	3 cut(s)	11, 18, 72
AlwNI	CAGNNNCTG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	5, 8, 11
ApoI	RAATTY	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	65, 138
AsuC2I	CCSGG	1 cut(s)	184
AsuNHI	GCTAGC	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	65, 138
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	17, 20
BcnI	CCSGG	1 cut(s)	184
BfaI	CTAG	2 cut(s)	15, 21
BisI	GCNGC	3 cut(s)	6, 9, 12
BlsI	GCNGC	3 cut(s)	7, 10, 13
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	65, 138
BmgT120I	GGNCC	2 cut(s)	65, 138
BmiI	GGNNCC	2 cut(s)	139, 140
BmrFI	CCNGG	1 cut(s)	184
BmtI	GCTAGC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	61, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	2 cut(s)	61, 182
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	17, 20
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	139, 140
BspOI	GCTAGC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	61, 182
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	32, 83, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	17, 20
BsuRI	GGCC	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	65, 138
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	5 cut(s)	11, 18, 54, 60, 72
CviKI_1	RGCY	5 cut(s)	11, 18, 54, 60, 72
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	3 cut(s)	32, 83, 151
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco47I	GGWCC	2 cut(s)	65, 138
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	177
FaeI	CATG	1 cut(s)	124
FaiI	YATR	1 cut(s)	122
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	6, 9, 12
Fsp4HI	GCNGC	3 cut(s)	6, 9, 12
FspBI	CTAG	2 cut(s)	15, 21
GluI	GCNGC	3 cut(s)	6, 9, 12
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	184
Hin1II	CATG	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	32, 83, 151
Hsp92II	CATG	1 cut(s)	124
KflI	GGGWCCC	1 cut(s)	138
LpnPI	CCDG	2 cut(s)	93, 180
Lsp1109I	GCAGC	2 cut(s)	17, 20
MaeI	CTAG	2 cut(s)	15, 21
MboII	GAAGA	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	1 cut(s)	177
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	1 cut(s)	56
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	184
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	139, 140
NmeAIII	GCCGAG	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	7, 10, 13
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	139, 140
PspPI	GGNCC	2 cut(s)	65, 138
PspPPI	RGGWCCY	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SatI	GCNGC	3 cut(s)	6, 9, 12
Sau96I	GGNCC	2 cut(s)	65, 138
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	4 cut(s)	13, 20, 74, 169
SgeI	CNNG	8 cut(s)	27, 33, 62, 74, 81, 120, 133, 179
SinI	GGWCC	2 cut(s)	65, 138
Sse9I	AATT	1 cut(s)	177
SspMI	CTAG	2 cut(s)	15, 21
StyD4I	CCNGG	1 cut(s)	182
TasI	AATT	1 cut(s)	177
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	3 cut(s)	5, 8, 11
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	65, 138
XapI	RAATTY	1 cut(s)	177
XspI	CTAG	2 cut(s)	15, 21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.