Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015195

Physical Location & Seq

Genomic Coordinates Reverse (-)

11367294 .. 11369253

Gene Structure 1960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G190500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCATCTACACTAATGGCAGCAACTGCTAGCTCCAGCACTCTTCTTAGACCAACCCCATTTCTTGGCCAAACCAGAGGGCCAAGTTTCAACACTCTTAGAGATGTTGCCCCAATGGGAACTGGGAAATACACCATGGGAAATGAGTTGTGGTATGGGCCAGACAGAGTGAAGTATTTGGGACCCTTTTCTGCTCAGACTCCATCGTACCTCACCGGAGAATTTCCCGGTGATTACGGATGGGACACTGCAGGGTTATCAGCTGACCCAGAGGCCTTTGCTAAGAACAGGGCTCTTGAGGTGATCCACGGCCGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACCCCAGAGGTGCTTGAAAAATGGGTTAGAGTGGACTTCAAAGAGCCAGTGTGGTTCAAGGCCGGAGCTCAAATTTTCTCAGAAGGTGGCCTTGACTATTTAGGCAACCCTAACCTTGTCCATGCTCAGAGCATCCTAGCAGTGCTAGGATTCCAAGTCATTCTCATGGGGCTTGTTGAGGGATTTCGCATCAACGGTCTTGACGGCGTAGGAGAGGGCAACAACCTCTACCCTGGAGGGCAATACTTCGACCCTCTCGGCCTTGCCGATGACCCTGTGACATTTGCTGAGCTCAAGGTCAAGGAAATCAAGAATGGGAGACTAGCCATGTTCTCCATGTTTGGCTTCTTTGTCCAAGCCATTGTCACTGGGAAGGGTCCTCTTGAGAACCTCTTGGACCACCTTGACAACCCTGTGGCCAACAATGCATGGGTCTATGCCACCAAGTTTGTGCCTGGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009941 GO:0009987 GO:0010033 GO:0010119 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

270

Amino Acids

29.12

Weight (kDa)

5.11

Isoelectric Point (pI)

19.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54270
fragaria_vesca	FvH4_3g21020
malus_domestica	MD03G1218900.v1.1 MD11G1236900.v1.1
prunus_persica	Prupe.4G190500_v2.0.a1
pyrus_communis	pycom03g16800 pycom11g20830
rosa_chinensis	RchiOBHm_Chr5g0036051
rosa_laevigata	RLG00000033661
rosa_multiflora	Rmu_sc0001493.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044710
rosa_rugosa	Rorug05G0152000
rosa_samantha	Rh5AG246400 Rh5BG246700 Rh5DG255100
rosa_wichuraiana	Rw5G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	3 cut(s)	67, 310, 762
AcsI	RAATTY	2 cut(s)	221, 417
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	4 cut(s)	91, 362, 385, 403
AjnI	CCWGG	2 cut(s)	577, 799
AluBI	AGCT	4 cut(s)	33, 263, 413, 637
AluI	AGCT	4 cut(s)	33, 263, 413, 637
Alw21I	GWGCWC	3 cut(s)	334, 415, 639
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	1 cut(s)	298
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	9 cut(s)	67, 80, 158, 273, 310, 405, 433, 604, 762
ApeKI	GCWGC	2 cut(s)	20, 339
ApoI	RAATTY	2 cut(s)	221, 417
AspS9I	GGNCC	5 cut(s)	80, 158, 182, 722, 742
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	4 cut(s)	205, 242, 313, 337
AsuNHI	GCTAGC	1 cut(s)	29
AvaII	GGWCC	3 cut(s)	182, 722, 742
BalI	TGGCCA	2 cut(s)	69, 764
BanII	GRGCYC	3 cut(s)	295, 415, 639
Bbv12I	GWGCWC	3 cut(s)	334, 415, 639
BbvI	GCAGC	2 cut(s)	32, 326
BccI	CCATC	2 cut(s)	211, 234
BceAI	ACGGC	2 cut(s)	325, 565
BciT130I	CCWGG	2 cut(s)	579, 801
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	5 cut(s)	30, 335, 482, 491, 668
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	21, 340
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	2 cut(s)	22, 341
Bme1390I	CCNGG	3 cut(s)	228, 579, 801
Bme18I	GGWCC	3 cut(s)	182, 722, 742
BmgT120I	GGNCC	5 cut(s)	80, 158, 182, 722, 742
BmiI	GGNNCC	3 cut(s)	183, 184, 723
BmrFI	CCNGG	3 cut(s)	228, 579, 801
BmrI	ACTGGG	2 cut(s)	132, 723
BmsI	GCATC	4 cut(s)	14, 351, 486, 543
BmtI	GCTAGC	1 cut(s)	33
BmuI	ACTGGG	2 cut(s)	132, 723
BpmI	CTGGAG	2 cut(s)	19, 600
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	3 cut(s)	317, 623, 749
BpuMI	CCSGG	1 cut(s)	228
BsaJI	CCNNGG	4 cut(s)	135, 307, 577, 800
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	3 cut(s)	127, 392, 718
BseBI	CCWGG	2 cut(s)	579, 801
BseDI	CCNNGG	4 cut(s)	135, 307, 577, 800
BseGI	GGATG	2 cut(s)	245, 477
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	4 cut(s)	209, 438, 485, 624
BseNI	ACTGG	3 cut(s)	127, 392, 718
BseX3I	CGGCCG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	32, 326
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	9 cut(s)	69, 82, 160, 275, 312, 407, 435, 606, 764
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	3 cut(s)	334, 415, 639
BsiSI	CCGG	4 cut(s)	216, 228, 313, 408
BslFI	GGGAC	2 cut(s)	195, 257
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	2 cut(s)	195, 257
BsnI	GGCC	9 cut(s)	69, 82, 160, 275, 312, 407, 435, 606, 764
Bsp1286I	GDGCHC	4 cut(s)	295, 334, 415, 639
Bsp143I	GATC	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	633
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	9 cut(s)	69, 82, 160, 275, 312, 407, 435, 606, 764
BspCNI	CTCAG	4 cut(s)	208, 437, 484, 625
BspLI	GGNNCC	3 cut(s)	183, 184, 723
BspMAI	CTGCAG	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	3 cut(s)	127, 392, 718
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	4 cut(s)	135, 307, 577, 800
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	579, 801
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	7 cut(s)	47, 98, 195, 282, 424, 471, 633
BstDSI	CCRYGG	2 cut(s)	135, 307
BstF5I	GGATG	2 cut(s)	245, 477
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	1 cut(s)	303
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 770
BstNI	CCWGG	2 cut(s)	579, 801
BstSCI	CCNGG	3 cut(s)	226, 577, 799
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	32, 326
BstZI	CGGCCG	1 cut(s)	310
BsuRI	GGCC	9 cut(s)	69, 82, 160, 275, 312, 407, 435, 606, 764
BtgI	CCRYGG	2 cut(s)	135, 307
BtsCI	GGATG	2 cut(s)	245, 477
BtsI	GCAGTG	2 cut(s)	246, 492
BtsIMutI	CAGTG	4 cut(s)	246, 399, 492, 711
Cac8I	GCNNGC	1 cut(s)	31
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	5 cut(s)	80, 158, 182, 722, 742
Csp6I	GTAC	1 cut(s)	208
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	6 cut(s)	136, 467, 511, 673, 682, 774
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	7 cut(s)	47, 98, 195, 282, 424, 471, 633
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
EaeI	YGGCCR	3 cut(s)	67, 310, 762
EagI	CGGCCG	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	2 cut(s)	413, 637
EclXI	CGGCCG	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	275
Eco24I	GRGCYC	3 cut(s)	295, 415, 639
Eco47I	GGWCC	3 cut(s)	182, 722, 742
Eco52I	CGGCCG	1 cut(s)	310
Eco53kI	GAGCTC	2 cut(s)	413, 637
EcoICRI	GAGCTC	2 cut(s)	413, 637
EcoO109I	RGGNCCY	2 cut(s)	182, 722
EcoRII	CCWGG	2 cut(s)	577, 799
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	775
EcoT38I	GRGCYC	3 cut(s)	295, 415, 639
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	6 cut(s)	139, 470, 514, 676, 685, 777
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FaqI	GGGAC	2 cut(s)	195, 257
FatI	CATG	6 cut(s)	135, 466, 510, 672, 681, 773
Fnu4HI	GCNGC	2 cut(s)	21, 340
FokI	GGATG	2 cut(s)	252, 464
FriOI	GRGCYC	3 cut(s)	295, 415, 639
Fsp4HI	GCNGC	2 cut(s)	21, 340
FspBI	CTAG	5 cut(s)	30, 335, 482, 491, 668
GluI	GCNGC	2 cut(s)	21, 340
GsuI	CTGGAG	2 cut(s)	19, 600
HaeIII	GGCC	9 cut(s)	69, 82, 160, 275, 312, 407, 435, 606, 764
HapII	CCGG	4 cut(s)	216, 228, 313, 408
Hin1II	CATG	6 cut(s)	139, 470, 514, 676, 685, 777
HinfI	GANTC	2 cut(s)	199, 495
HpaII	CCGG	4 cut(s)	216, 228, 313, 408
HphI	GGTGA	4 cut(s)	205, 242, 313, 337
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	198, 427, 474
Hpy188III	TCNNGA	4 cut(s)	296, 545, 655, 728
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	422, 712
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4V	TGCA	3 cut(s)	251, 342, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 770
HpyF3I	CTNAG	7 cut(s)	47, 98, 195, 282, 424, 471, 633
Hsp92II	CATG	6 cut(s)	139, 470, 514, 676, 685, 777
KflI	GGGWCCC	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	3 cut(s)	38, 329, 410
Lsp1109I	GCAGC	2 cut(s)	32, 326
LweI	GCATC	4 cut(s)	14, 351, 486, 543
MaeI	CTAG	5 cut(s)	30, 335, 482, 491, 668
MaeIII	GTNAC	2 cut(s)	622, 709
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	4 cut(s)	295, 334, 415, 639
MlsI	TGGCCA	2 cut(s)	69, 764
MluCI	AATT	2 cut(s)	221, 417
MluNI	TGGCCA	2 cut(s)	69, 764
MlyI	GAGTC	1 cut(s)	193
Mox20I	TGGCCA	2 cut(s)	69, 764
Mph1103I	ATGCAT	1 cut(s)	775
MscI	TGGCCA	2 cut(s)	69, 764
MslI	CAYNNNNRTG	1 cut(s)	509
Msp20I	TGGCCA	2 cut(s)	69, 764
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	4 cut(s)	216, 228, 313, 408
MspR9I	CCNGG	3 cut(s)	228, 579, 801
MvaI	CCWGG	2 cut(s)	579, 801
MwoI	GCNNNNNNNGC	2 cut(s)	26, 770
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	303
NheI	GCTAGC	1 cut(s)	29
NlaIII	CATG	6 cut(s)	139, 470, 514, 676, 685, 777
NlaIV	GGNNCC	3 cut(s)	183, 184, 723
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	622, 709
NsiI	ATGCAT	1 cut(s)	775
PceI	AGGCCT	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PfeI	GAWTC	1 cut(s)	495
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	22, 341
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PpuMI	RGGWCCY	2 cut(s)	182, 722
Psp124BI	GAGCTC	2 cut(s)	415, 639
Psp5II	RGGWCCY	2 cut(s)	182, 722
Psp6I	CCWGG	2 cut(s)	577, 799
PspGI	CCWGG	2 cut(s)	577, 799
PspN4I	GGNNCC	3 cut(s)	183, 184, 723
PspPI	GGNCC	5 cut(s)	80, 158, 182, 722, 742
PspPPI	RGGWCCY	2 cut(s)	182, 722
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	509
SacI	GAGCTC	2 cut(s)	415, 639
SatI	GCNGC	2 cut(s)	21, 340
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	5 cut(s)	80, 158, 182, 722, 742
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	228, 579, 801
SduI	GDGCHC	4 cut(s)	295, 334, 415, 639
SfaNI	GCATC	4 cut(s)	14, 351, 486, 543
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	3 cut(s)	182, 722, 742
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	3 cut(s)	296, 638, 728
SmoI	CTYRAG	3 cut(s)	296, 638, 728
Sse9I	AATT	2 cut(s)	221, 417
SseBI	AGGCCT	1 cut(s)	275
SspMI	CTAG	5 cut(s)	30, 335, 482, 491, 668
SstI	GAGCTC	2 cut(s)	415, 639
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	3 cut(s)	226, 577, 799
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	542
TaqI	TCGA	1 cut(s)	594
TasI	AATT	2 cut(s)	221, 417
TfiI	GAWTC	1 cut(s)	495
TscAI	CASTG	4 cut(s)	253, 399, 492, 718
TseFI	GTSAC	2 cut(s)	622, 709
TseI	GCWGC	2 cut(s)	20, 339
Tsp45I	GTSAC	2 cut(s)	622, 709
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	4 cut(s)	253, 399, 492, 718
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	3 cut(s)	182, 722, 742
XapI	RAATTY	2 cut(s)	221, 417
XspI	CTAG	5 cut(s)	30, 335, 482, 491, 668
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.