Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015195

Physical Location & Seq

Genomic Coordinates Forward (+)

30339429 .. 30341036

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1218900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCAGCAGCTGCTAGCTCGAGCACTCTTCTAAGAACAACCCCATTTCTTGGCCAAAGCCGAGGACCAAGCTTCAACACTCTTAAGGATGTTGTGCCAATGGGAACTGGCAAATACACCATGGGCAATGATTTGTGGTATGGACCGGACAGAGTGAAGTATTTGGGACCCTTTTCTGCTCAGACTCCTTCGTACCTGAACGGAGAATTCCCCGGTGATTACGGATGGGACACCGCAGGGTTGTCAGCTGACCCCGAGGCCTTTGCTAAGAACAGGGCTCTTGAGGTGATCCATGGCCGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACCCCAGAAGTTCTCGAGAAATGGGTGAGAGTGGACTTCAAAGAGCCAGTGTGGTTCAAAGCAGGAGCTCAAATCTTCTCCGAAGGCGGCCTCGACTATTTGGGTAACCCCAACTTAGTCCATGCTCAGAGCATCCTAGCGGTGCTTGGGTTCCAAGTCATCCTCATGGGTCTCGTTGAAGGATTCCGCATCAATGGTCTTGATGGTGTCGGAGAGGGCAACAACCTCTACCCGGGTGGGCAATACTTCGACCCTCTCGGCCTTGCCGATGACCCCGTCACCTTCGCCGAGCTCAAGGTGAAGGAAATCAAGAATGGGAGGCTAGCCATGTTCTCCATGTTTGGGTTCTTTGTCCAAGCCATTGTGACCGGGAAGGGTCCCCTAGAGAACCTCTTGGACCACCTTGACAACCCTGTAGCCAACAATGCATGGGTCTATGCCACCAAGTTTGTGCCCGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009765 GO:0009768 GO:0009769 GO:0009941 GO:0009987 GO:0010033 GO:0010119 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0019904 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097159 GO:0097305 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

265

Amino Acids

28.58

Weight (kDa)

5.1

Isoelectric Point (pI)

19.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	63 - 231	2.7e-51	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54270
fragaria_vesca	FvH4_3g21020
malus_domestica	MD03G1218900.v1.1 MD11G1236900.v1.1
prunus_persica	Prupe.4G190500_v2.0.a1
pyrus_communis	pycom03g16800 pycom11g20830
rosa_chinensis	RchiOBHm_Chr5g0036051
rosa_laevigata	RLG00000033661
rosa_multiflora	Rmu_sc0001493.1_g000005
rosa_roxburghii	Rroxscaffold_1G00044710
rosa_rugosa	Rorug05G0152000
rosa_samantha	Rh5AG246400 Rh5BG246700 Rh5DG255100
rosa_wichuraiana	Rw5G022620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AciI	CCGC	4 cut(s)	234, 417, 470, 517
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	2 cut(s)	52, 295
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	3 cut(s)	50, 562, 672
AflII	CTTAAG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	76, 370, 388, 509
AluBI	AGCT	6 cut(s)	11, 18, 72, 248, 398, 622
AluI	AGCT	6 cut(s)	11, 18, 72, 248, 398, 622
Alw21I	GWGCWC	4 cut(s)	26, 319, 400, 624
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	4 cut(s)	19, 254, 344, 562
AoxI	GGCC	5 cut(s)	52, 258, 295, 418, 589
ApeKI	GCWGC	4 cut(s)	5, 8, 11, 324
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	5 cut(s)	65, 143, 167, 707, 727
AsuC2I	CCSGG	5 cut(s)	213, 563, 564, 700, 786
AsuHPI	GGTGA	6 cut(s)	227, 298, 322, 367, 601, 640
AsuNHI	GCTAGC	2 cut(s)	14, 652
AvaI	CYCGRG	4 cut(s)	19, 254, 344, 562
AvaII	GGWCC	5 cut(s)	65, 143, 167, 707, 727
BaeGI	GKGCMC	1 cut(s)	786
BalI	TGGCCA	1 cut(s)	54
BanII	GRGCYC	3 cut(s)	280, 400, 624
Bbv12I	GWGCWC	4 cut(s)	26, 319, 400, 624
BbvI	GCAGC	3 cut(s)	17, 20, 311
BccI	CCATC	2 cut(s)	219, 527
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BcnI	CCSGG	5 cut(s)	213, 563, 564, 700, 786
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	5 cut(s)	15, 320, 467, 653, 713
BfmI	CTRYAG	1 cut(s)	744
BfrI	CTTAAG	1 cut(s)	83
BisI	GCNGC	5 cut(s)	6, 9, 12, 325, 418
BlsI	GCNGC	5 cut(s)	7, 10, 13, 326, 419
Bme1390I	CCNGG	5 cut(s)	213, 563, 564, 700, 786
Bme18I	GGWCC	5 cut(s)	65, 143, 167, 707, 727
BmeT110I	CYCGRG	4 cut(s)	19, 254, 344, 562
BmgT120I	GGNCC	5 cut(s)	65, 143, 167, 707, 727
BmiI	GGNNCC	5 cut(s)	168, 169, 482, 708, 709
BmrFI	CCNGG	5 cut(s)	213, 563, 564, 700, 786
BmsI	GCATC	3 cut(s)	336, 471, 528
BmtI	GCTAGC	2 cut(s)	18, 656
BpuEI	CTTGAG	2 cut(s)	302, 608
BpuMI	CCSGG	5 cut(s)	213, 563, 564, 700, 786
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	6 cut(s)	61, 120, 211, 255, 292, 562
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 562, 672
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	2 cut(s)	112, 377
Bse3DI	GCAATG	1 cut(s)	133
BseDI	CCNNGG	6 cut(s)	61, 120, 211, 255, 292, 562
BseGI	GGATG	4 cut(s)	94, 230, 462, 489
BseLI	CCNNNNNNNGG	3 cut(s)	50, 562, 672
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	194, 470
BseNI	ACTGG	2 cut(s)	112, 377
BseSI	GKGCMC	1 cut(s)	786
BseXI	GCAGC	3 cut(s)	17, 20, 311
BshFI	GGCC	5 cut(s)	54, 260, 297, 420, 591
BsiHKAI	GWGCWC	4 cut(s)	26, 319, 400, 624
BsiHKCI	CYCGRG	4 cut(s)	19, 254, 344, 562
BsiSI	CCGG	6 cut(s)	146, 213, 298, 563, 699, 786
BslFI	GGGAC	3 cut(s)	180, 242, 693
BslI	CCNNNNNNNGG	3 cut(s)	50, 562, 672
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	3 cut(s)	180, 242, 693
BsnI	GGCC	5 cut(s)	54, 260, 297, 420, 591
Bso31I	GGTCTC	1 cut(s)	506
BsoBI	CYCGRG	4 cut(s)	19, 254, 344, 562
Bsp1286I	GDGCHC	6 cut(s)	26, 280, 319, 400, 624, 786
Bsp143I	GATC	2 cut(s)	288, 788
Bsp19I	CCATGG	2 cut(s)	120, 292
BspACI	CCGC	4 cut(s)	234, 417, 470, 517
BspANI	GGCC	5 cut(s)	54, 260, 297, 420, 591
BspCNI	CTCAG	2 cut(s)	193, 469
BspLI	GGNNCC	5 cut(s)	168, 169, 482, 708, 709
BspOI	GCTAGC	2 cut(s)	18, 656
BspPI	GGATC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	112, 377
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	6 cut(s)	61, 120, 211, 255, 292, 562
BssMI	GATC	2 cut(s)	288, 788
BssT1I	CCWWGG	2 cut(s)	120, 292
Bst6I	CTCTTC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	16, 654
BstDEI	CTNAG	5 cut(s)	32, 180, 267, 445, 456
BstDSI	CCRYGG	2 cut(s)	120, 292
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	4 cut(s)	94, 230, 462, 489
BstKTI	GATC	2 cut(s)	291, 791
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	288, 788
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 755
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	5 cut(s)	211, 561, 562, 698, 784
BstSFI	CTRYAG	1 cut(s)	744
BstSLI	GKGCMC	1 cut(s)	786
BstV1I	GCAGC	3 cut(s)	17, 20, 311
BsuRI	GGCC	5 cut(s)	54, 260, 297, 420, 591
BtgI	CCRYGG	2 cut(s)	120, 292
BtsCI	GGATG	4 cut(s)	94, 230, 462, 489
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	16, 654
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	5 cut(s)	65, 143, 167, 707, 727
Cfr9I	CCCGGG	1 cut(s)	562
Csp6I	GTAC	1 cut(s)	193
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	7 cut(s)	121, 293, 452, 496, 658, 667, 759
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	5 cut(s)	32, 180, 267, 445, 456
DpnI	GATC	2 cut(s)	290, 790
DpnII	GATC	2 cut(s)	288, 788
EaeI	YGGCCR	2 cut(s)	52, 295
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Ecl136II	GAGCTC	2 cut(s)	398, 622
Eco130I	CCWWGG	2 cut(s)	120, 292
Eco147I	AGGCCT	1 cut(s)	260
Eco24I	GRGCYC	3 cut(s)	280, 400, 624
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	5 cut(s)	65, 143, 167, 707, 727
Eco53kI	GAGCTC	2 cut(s)	398, 622
Eco88I	CYCGRG	4 cut(s)	19, 254, 344, 562
Eco91I	GGTNACC	1 cut(s)	434
EcoICRI	GAGCTC	2 cut(s)	398, 622
EcoO109I	RGGNCCY	2 cut(s)	167, 707
EcoO65I	GGTNACC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	206
EcoT14I	CCWWGG	2 cut(s)	120, 292
EcoT22I	ATGCAT	1 cut(s)	760
EcoT38I	GRGCYC	3 cut(s)	280, 400, 624
ErhI	CCWWGG	2 cut(s)	120, 292
FaeI	CATG	7 cut(s)	124, 296, 455, 499, 661, 670, 762
FaqI	GGGAC	3 cut(s)	180, 242, 693
FatI	CATG	7 cut(s)	120, 292, 451, 495, 657, 666, 758
Fnu4HI	GCNGC	5 cut(s)	6, 9, 12, 325, 418
FokI	GGATG	4 cut(s)	101, 237, 449, 476
FriOI	GRGCYC	3 cut(s)	280, 400, 624
Fsp4HI	GCNGC	5 cut(s)	6, 9, 12, 325, 418
FspBI	CTAG	5 cut(s)	15, 320, 467, 653, 713
GluI	GCNGC	5 cut(s)	6, 9, 12, 325, 418
HaeIII	GGCC	5 cut(s)	54, 260, 297, 420, 591
HapII	CCGG	6 cut(s)	146, 213, 298, 563, 699, 786
Hin1II	CATG	7 cut(s)	124, 296, 455, 499, 661, 670, 762
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	2 cut(s)	184, 513
HpaII	CCGG	6 cut(s)	146, 213, 298, 563, 699, 786
HphI	GGTGA	6 cut(s)	227, 298, 322, 367, 601, 640
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	4 cut(s)	183, 412, 459, 542
Hpy188III	TCNNGA	5 cut(s)	281, 344, 346, 530, 640
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	6 cut(s)	198, 407, 503, 622, 625, 697
HpyCH4V	TGCA	2 cut(s)	327, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 755
HpyF3I	CTNAG	5 cut(s)	32, 180, 267, 445, 456
Hsp92II	CATG	7 cut(s)	124, 296, 455, 499, 661, 670, 762
KflI	GGGWCCC	2 cut(s)	167, 707
Kzo9I	GATC	2 cut(s)	288, 788
LmnI	GCTCC	2 cut(s)	314, 395
Lsp1109I	GCAGC	3 cut(s)	17, 20, 311
LweI	GCATC	3 cut(s)	336, 471, 528
MaeI	CTAG	5 cut(s)	15, 320, 467, 653, 713
MaeIII	GTNAC	3 cut(s)	434, 607, 694
MalI	GATC	2 cut(s)	290, 790
MboI	GATC	2 cut(s)	288, 788
MboII	GAAGA	2 cut(s)	20, 397
MhlI	GDGCHC	6 cut(s)	26, 280, 319, 400, 624, 786
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	1 cut(s)	206
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	520
Mox20I	TGGCCA	1 cut(s)	54
Mph1103I	ATGCAT	1 cut(s)	760
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	2 cut(s)	11, 248
MspCI	CTTAAG	1 cut(s)	83
MspI	CCGG	6 cut(s)	146, 213, 298, 563, 699, 786
MspR9I	CCNGG	5 cut(s)	213, 563, 564, 700, 786
MwoI	GCNNNNNNNGC	2 cut(s)	11, 755
NciI	CCSGG	5 cut(s)	213, 563, 564, 700, 786
NcoI	CCATGG	2 cut(s)	120, 292
NdeII	GATC	2 cut(s)	288, 788
NheI	GCTAGC	2 cut(s)	14, 652
NlaIII	CATG	7 cut(s)	124, 296, 455, 499, 661, 670, 762
NlaIV	GGNNCC	5 cut(s)	168, 169, 482, 708, 709
NmeAIII	GCCGAG	3 cut(s)	86, 567, 643
NmuCI	GTSAC	2 cut(s)	607, 694
NsiI	ATGCAT	1 cut(s)	760
PaeR7I	CTCGAG	2 cut(s)	19, 344
PceI	AGGCCT	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	513
PflFI	GACNNNGTC	1 cut(s)	605
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	7, 10, 13, 326, 419
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PpuMI	RGGWCCY	2 cut(s)	167, 707
Psp124BI	GAGCTC	2 cut(s)	400, 624
Psp5II	RGGWCCY	2 cut(s)	167, 707
PspEI	GGTNACC	1 cut(s)	434
PspN4I	GGNNCC	5 cut(s)	168, 169, 482, 708, 709
PspPI	GGNCC	5 cut(s)	65, 143, 167, 707, 727
PspPPI	RGGWCCY	2 cut(s)	167, 707
PspXI	VCTCGAGB	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	11
PsyI	GACNNNGTC	1 cut(s)	605
PvuII	CAGCTG	2 cut(s)	11, 248
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	2 cut(s)	400, 624
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	5 cut(s)	6, 9, 12, 325, 418
Sau3AI	GATC	2 cut(s)	288, 788
Sau96I	GGNCC	5 cut(s)	65, 143, 167, 707, 727
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	5 cut(s)	213, 563, 564, 700, 786
SduI	GDGCHC	6 cut(s)	26, 280, 319, 400, 624, 786
SfaNI	GCATC	3 cut(s)	336, 471, 528
SfcI	CTRYAG	1 cut(s)	744
Sfr274I	CTCGAG	2 cut(s)	19, 344
SinI	GGWCC	5 cut(s)	65, 143, 167, 707, 727
SlaI	CTCGAG	2 cut(s)	19, 344
SmaI	CCCGGG	1 cut(s)	564
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	5 cut(s)	19, 83, 281, 344, 623
SmoI	CTYRAG	5 cut(s)	19, 83, 281, 344, 623
Sse9I	AATT	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	4 cut(s)	234, 417, 470, 517
SspMI	CTAG	5 cut(s)	15, 320, 467, 653, 713
SstI	GAGCTC	2 cut(s)	400, 624
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	5 cut(s)	211, 561, 562, 698, 784
StyI	CCWWGG	2 cut(s)	120, 292
TaqI	TCGA	4 cut(s)	20, 345, 423, 579
TasI	AATT	1 cut(s)	206
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	513
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	2 cut(s)	607, 694
TseI	GCWGC	4 cut(s)	5, 8, 11, 324
Tsp45I	GTSAC	2 cut(s)	607, 694
TspGWI	ACGGA	2 cut(s)	216, 237
TspMI	CCCGGG	1 cut(s)	562
TspRI	CASTG	1 cut(s)	384
Tth111I	GACNNNGTC	1 cut(s)	605
Van91I	CCANNNNNTGG	1 cut(s)	50
Vha464I	CTTAAG	1 cut(s)	83
VpaK11BI	GGWCC	5 cut(s)	65, 143, 167, 707, 727
XapI	RAATTY	1 cut(s)	206
XhoI	CTCGAG	2 cut(s)	19, 344
XmaI	CCCGGG	1 cut(s)	562
XspI	CTAG	5 cut(s)	15, 320, 467, 653, 713
Zsp2I	ATGCAT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.