MD11G1236900.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015195
Physical Location & Seq
Forward (+)
34455547 .. 34457139
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1236900.v1.1.491

Sequence Viewer

Length: 795 bp
ATGGCAGCAGCTGCTAGCTCAAGCACGCTTCTAAGAACCACCCCATTTCTTGGCCAAAGCCGAGGGCCAAGTTTTAACACTCTCAGAGATGTTGTCCCAGTGGGAACTGGCAAATACACCATGGGGAATGATTTGTGGTATGGACCAGACAGAGTGAAGTATTTGGGACCCTTTTCTGCTCAGACTCCTTCGTACCTGAACGGAGAATTTCCTGGTGATTACGGATGGGATACTGCAGGGTTGTCAGCTGACCCAGAGGCCTTTGCTAAGAACCGGGCTCTTGAGGTAATCCATAGCCGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACCCCAGAAGTTCTCGAGAAATGGGTGAGAGTGGACTTCAAAGAGCCAGTGTGGTTCAAAGCCGGAGCTCAAATCTTCTCAGAAGGAGGCCTCGACTATTTGGGCAACCCCAACCTAGTCCACGCTCAGAGCATCCTAGCAGTGCTTGGGTTCCAAGTCATCCTCATGGGTCTCGTTGAAGGATTCCGTATCAACGGTCTTGATGGCGTAGGAGAGGGCAACAACCTCTACCCCGGAGGGCAATACTTCGACCCCCTCGGCCTTGCCGATGACCCTGTCACCTTTGCCGAGCTCAAGGTGAAGGAAATCAAGAATGGGAGGCTAGCCATGTTCTCCATGTTTGGGTTCTTTGTCCAAGCCATTGTGACTGGGAAGGGTCCCCTAGAGAACCTCTTGGACCACCTTGACAACCCTGTAGCTAACAATGCATGGGTCTATGCCACCAAGTTTGTGCCCGGATCATAA

Protein Analysis

265

Amino Acids

28.6

Weight (kDa)

5.1

Isoelectric Point (pI)

22.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 63 - 231 2.4e-50 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54270
fragaria_vesca FvH4_3g21020
malus_domestica MD03G1218900.v1.1 MD11G1236900.v1.1
prunus_persica Prupe.4G190500_v2.0.a1
pyrus_communis pycom03g16800 pycom11g20830
rosa_chinensis RchiOBHm_Chr5g0036051
rosa_laevigata RLG00000033661
rosa_multiflora Rmu_sc0001493.1_g000005
rosa_roxburghii Rroxscaffold_1G00044710
rosa_rugosa Rorug05G0152000
rosa_samantha Rh5AG246400 Rh5BG246700 Rh5DG255100
rosa_wichuraiana Rw5G022620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 50, 672
AgsI TTSAA 3 cut(s) 370, 388, 509
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 6 cut(s) 11, 18, 248, 398, 622, 749
AluI AGCT 6 cut(s) 11, 18, 248, 398, 622, 749
Alw21I GWGCWC 3 cut(s) 319, 400, 624
Alw26I GTCTC 1 cut(s) 506
AlwNI CAGNNNCTG 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 5 cut(s) 52, 65, 258, 418, 589
ApeKI GCWGC 4 cut(s) 5, 8, 11, 324
ApoI RAATTY 1 cut(s) 206
AspS9I GGNCC 5 cut(s) 65, 143, 167, 707, 727
AsuC2I CCSGG 3 cut(s) 275, 564, 786
AsuHPI GGTGA 5 cut(s) 227, 322, 367, 601, 640
AsuNHI GCTAGC 2 cut(s) 14, 652
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 4 cut(s) 143, 167, 707, 727
BaeGI GKGCMC 1 cut(s) 786
BalI TGGCCA 1 cut(s) 54
BanII GRGCYC 3 cut(s) 280, 400, 624
Bbv12I GWGCWC 3 cut(s) 319, 400, 624
BbvI GCAGC 3 cut(s) 17, 20, 311
BccI CCATC 2 cut(s) 219, 527
BciT130I CCWGG 1 cut(s) 213
BciVI GTATCC 1 cut(s) 223
BcnI CCSGG 3 cut(s) 275, 564, 786
BcoDI GTCTC 1 cut(s) 506
BfaI CTAG 6 cut(s) 15, 320, 446, 467, 653, 713
BfmI CTRYAG 2 cut(s) 234, 744
BfuI GTATCC 1 cut(s) 223
BisI GCNGC 4 cut(s) 6, 9, 12, 325
BlsI GCNGC 4 cut(s) 7, 10, 13, 326
Bme1390I CCNGG 4 cut(s) 213, 275, 564, 786
Bme18I GGWCC 4 cut(s) 143, 167, 707, 727
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 5 cut(s) 65, 143, 167, 707, 727
BmiI GGNNCC 5 cut(s) 168, 169, 482, 708, 709
BmrFI CCNGG 4 cut(s) 213, 275, 564, 786
BmrI ACTGGG 2 cut(s) 92, 708
BmsI GCATC 2 cut(s) 336, 471
BmtI GCTAGC 2 cut(s) 18, 656
BmuI ACTGGG 2 cut(s) 92, 708
BpuEI CTTGAG 3 cut(s) 4, 302, 608
BpuMI CCSGG 3 cut(s) 275, 564, 786
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 4 cut(s) 61, 120, 562, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 672
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 4 cut(s) 98, 112, 377, 703
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 4 cut(s) 61, 120, 562, 586
BseGI GGATG 3 cut(s) 230, 462, 489
BseLI CCNNNNNNNGG 2 cut(s) 50, 672
BseMII CTCAG 4 cut(s) 97, 194, 423, 470
BseNI ACTGG 4 cut(s) 98, 112, 377, 703
BseSI GKGCMC 1 cut(s) 786
BseXI GCAGC 3 cut(s) 17, 20, 311
BshFI GGCC 5 cut(s) 54, 67, 260, 420, 591
BsiHKAI GWGCWC 3 cut(s) 319, 400, 624
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 5 cut(s) 274, 298, 393, 564, 786
BslFI GGGAC 3 cut(s) 80, 180, 693
BslI CCNNNNNNNGG 2 cut(s) 50, 672
BsmAI GTCTC 1 cut(s) 506
BsmFI GGGAC 3 cut(s) 80, 180, 693
BsnI GGCC 5 cut(s) 54, 67, 260, 420, 591
Bso31I GGTCTC 1 cut(s) 506
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 5 cut(s) 280, 319, 400, 624, 786
Bsp143I GATC 1 cut(s) 788
Bsp19I CCATGG 1 cut(s) 120
BspANI GGCC 5 cut(s) 54, 67, 260, 420, 591
BspCNI CTCAG 4 cut(s) 96, 193, 422, 469
BspLI GGNNCC 5 cut(s) 168, 169, 482, 708, 709
BspMAI CTGCAG 1 cut(s) 238
BspOI GCTAGC 2 cut(s) 18, 656
BspTNI GGTCTC 1 cut(s) 506
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 4 cut(s) 98, 112, 377, 703
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 4 cut(s) 61, 120, 562, 586
BssMI GATC 1 cut(s) 788
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 16, 26, 654
BstDEI CTNAG 6 cut(s) 32, 83, 180, 267, 409, 456
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 3 cut(s) 230, 462, 489
BstKTI GATC 1 cut(s) 791
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 1 cut(s) 788
BstMWI GCNNNNNNNGC 2 cut(s) 11, 755
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 4 cut(s) 211, 273, 562, 784
BstSFI CTRYAG 2 cut(s) 234, 744
BstSLI GKGCMC 1 cut(s) 786
BstV1I GCAGC 3 cut(s) 17, 20, 311
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 5 cut(s) 54, 67, 260, 420, 591
BtgI CCRYGG 1 cut(s) 120
BtsCI GGATG 3 cut(s) 230, 462, 489
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 3 cut(s) 105, 384, 477
Cac8I GCNNGC 3 cut(s) 16, 26, 654
CaiI CAGNNNCTG 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 5 cut(s) 65, 143, 167, 707, 727
Csp6I GTAC 1 cut(s) 193
CspCI CAANNNNNGTGG 2 cut(s) 760, 795
CviAII CATG 5 cut(s) 121, 496, 658, 667, 759
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 6 cut(s) 32, 83, 180, 267, 409, 456
DpnI GATC 1 cut(s) 790
DpnII GATC 1 cut(s) 788
EaeI YGGCCR 1 cut(s) 52
Ecl136II GAGCTC 2 cut(s) 398, 622
Eco130I CCWWGG 1 cut(s) 120
Eco147I AGGCCT 2 cut(s) 260, 420
Eco24I GRGCYC 3 cut(s) 280, 400, 624
Eco31I GGTCTC 1 cut(s) 506
Eco47I GGWCC 4 cut(s) 143, 167, 707, 727
Eco53kI GAGCTC 2 cut(s) 398, 622
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 2 cut(s) 398, 622
EcoO109I RGGNCCY 2 cut(s) 167, 707
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 760
EcoT38I GRGCYC 3 cut(s) 280, 400, 624
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 5 cut(s) 124, 499, 661, 670, 762
FaqI GGGAC 3 cut(s) 80, 180, 693
FatI CATG 5 cut(s) 120, 495, 657, 666, 758
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 325
FokI GGATG 3 cut(s) 237, 449, 476
FriOI GRGCYC 3 cut(s) 280, 400, 624
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 325
FspBI CTAG 6 cut(s) 15, 320, 446, 467, 653, 713
GluI GCNGC 4 cut(s) 6, 9, 12, 325
HaeIII GGCC 5 cut(s) 54, 67, 260, 420, 591
HapII CCGG 5 cut(s) 274, 298, 393, 564, 786
Hin1II CATG 5 cut(s) 124, 499, 661, 670, 762
HinfI GANTC 2 cut(s) 184, 513
HpaII CCGG 5 cut(s) 274, 298, 393, 564, 786
HphI GGTGA 5 cut(s) 227, 322, 367, 601, 640
Hpy166II GTNNAC 2 cut(s) 364, 451
Hpy188I TCNGA 4 cut(s) 86, 183, 412, 459
Hpy188III TCNNGA 5 cut(s) 281, 344, 346, 530, 640
Hpy8I GTNNAC 2 cut(s) 364, 451
HpyAV CCTTC 5 cut(s) 198, 407, 503, 625, 697
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4V TGCA 3 cut(s) 236, 327, 758
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 755
HpyF3I CTNAG 6 cut(s) 32, 83, 180, 267, 409, 456
Hsp92II CATG 5 cut(s) 124, 499, 661, 670, 762
KflI GGGWCCC 2 cut(s) 167, 707
Kzo9I GATC 1 cut(s) 788
LmnI GCTCC 2 cut(s) 314, 395
Lsp1109I GCAGC 3 cut(s) 17, 20, 311
LweI GCATC 2 cut(s) 336, 471
MaeI CTAG 6 cut(s) 15, 320, 446, 467, 653, 713
MaeIII GTNAC 2 cut(s) 607, 694
MalI GATC 1 cut(s) 790
MboI GATC 1 cut(s) 788
MboII GAAGA 1 cut(s) 397
MhlI GDGCHC 5 cut(s) 280, 319, 400, 624, 786
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 1 cut(s) 206
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 1 cut(s) 178
Mox20I TGGCCA 1 cut(s) 54
Mph1103I ATGCAT 1 cut(s) 760
MscI TGGCCA 1 cut(s) 54
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 494
Msp20I TGGCCA 1 cut(s) 54
MspA1I CMGCKG 2 cut(s) 11, 248
MspI CCGG 5 cut(s) 274, 298, 393, 564, 786
MspR9I CCNGG 4 cut(s) 213, 275, 564, 786
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 11, 755
NciI CCSGG 3 cut(s) 275, 564, 786
NcoI CCATGG 1 cut(s) 120
NdeII GATC 1 cut(s) 788
NheI GCTAGC 2 cut(s) 14, 652
NlaIII CATG 5 cut(s) 124, 499, 661, 670, 762
NlaIV GGNNCC 5 cut(s) 168, 169, 482, 708, 709
NmeAIII GCCGAG 3 cut(s) 86, 567, 643
NmuCI GTSAC 2 cut(s) 607, 694
NsiI ATGCAT 1 cut(s) 760
PaeR7I CTCGAG 1 cut(s) 344
PceI AGGCCT 2 cut(s) 260, 420
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PfeI GAWTC 1 cut(s) 513
PflFI GACNNNGTC 1 cut(s) 605
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 4 cut(s) 7, 10, 13, 326
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 2 cut(s) 167, 707
Psp124BI GAGCTC 2 cut(s) 400, 624
Psp5II RGGWCCY 2 cut(s) 167, 707
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 5 cut(s) 168, 169, 482, 708, 709
PspPI GGNCC 5 cut(s) 65, 143, 167, 707, 727
PspPPI RGGWCCY 2 cut(s) 167, 707
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 11
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 2 cut(s) 11, 248
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 2 cut(s) 400, 624
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 4 cut(s) 6, 9, 12, 325
Sau3AI GATC 1 cut(s) 788
Sau96I GGNCC 5 cut(s) 65, 143, 167, 707, 727
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 4 cut(s) 213, 275, 564, 786
SduI GDGCHC 5 cut(s) 280, 319, 400, 624, 786
SfaNI GCATC 2 cut(s) 336, 471
SfcI CTRYAG 2 cut(s) 234, 744
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 4 cut(s) 143, 167, 707, 727
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 4 cut(s) 19, 281, 344, 623
SmoI CTYRAG 4 cut(s) 19, 281, 344, 623
Sse9I AATT 1 cut(s) 206
SseBI AGGCCT 2 cut(s) 260, 420
SspMI CTAG 6 cut(s) 15, 320, 446, 467, 653, 713
SstI GAGCTC 2 cut(s) 400, 624
StuI AGGCCT 2 cut(s) 260, 420
StyD4I CCNGG 4 cut(s) 211, 273, 562, 784
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 527
TaqI TCGA 3 cut(s) 345, 423, 579
TasI AATT 1 cut(s) 206
TfiI GAWTC 1 cut(s) 513
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 3 cut(s) 105, 384, 477
TseFI GTSAC 2 cut(s) 607, 694
TseI GCWGC 4 cut(s) 5, 8, 11, 324
Tsp45I GTSAC 2 cut(s) 607, 694
TspGWI ACGGA 3 cut(s) 216, 237, 506
TspRI CASTG 3 cut(s) 105, 384, 477
Tth111I GACNNNGTC 1 cut(s) 605
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 4 cut(s) 143, 167, 707, 727
XapI RAATTY 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 344
XspI CTAG 6 cut(s) 15, 320, 446, 467, 653, 713
Zsp2I ATGCAT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.