Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004475

Physical Location & Seq

Genomic Coordinates Reverse (-)

14897514 .. 14898167

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTTCATTATTCCCACTATACCTCTCCCATCCTAACCCTCACCCACTAAATCAACTCCTCTCCTCCCAAACCTCCAAAAACCCATCACAGTATTACATCCGTTTCCAACCCAGAAAACACTACTTGTTCATCACCAAATGCACTGAACCAAGCTCTACTGAACCCGACTTCCCAAGTCCAAACTCTGAAACCACCATCAGTGCAGAGAAATTCCCGATCGAAAAGCGAAGAAAATCAGAAATCACCCGAGACAGGAAGTCCTCAACTGGCCTGGTAAAGCCCGAGCCACCCAACTTTGAGATTGGTTGGAAGAGAACCAAAAAGATTCCACTAGAGAAGCCAGTAGGGTATGTCATAGCTGACTTCCTCGAGAAGTTGGAGGGCTTAATGGGGCGAGAATTCGGGTCGAGAGAATTGCTGGTGAAGGCTGCAGAGATTGTGGCTGAGAGAGCAAGAGAAGAAGCAGAAGTGTTGAGAGATGAAGGAAAGGTGGAAGATAGACTGGTGACTGAATTGTTTAGGGTGCTGAAGCTGATGGAGATGGACATGGTTATGGTGAAGGCTGCAGTCAAGGACGAGACTTTGAGTGAGAGGCTGGAGCAGGCTAAGGCAAGGTGCAGGCAAGCCATACTTGTCGCTTTATCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.92

Weight (kDa)

8.97

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51100
fragaria_vesca	FvH4_3g21830
malus_domestica	MD03G1211500.v1.1
prunus_persica	Prupe.4G202500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0410121 RchiOBHm_Chr5g0037571
rosa_laevigata	RLG00000008454 RLG00000008457 RLG00000008460 RLG00000008463 RLG00000008466 RLG00000008470 RLG00000008473 RLG00000008476 RLG00000008479 RLG00000008482 RLG00000008485 RLG00000008488 RLG00000033788
rosa_multiflora	Rmu_sc0000365.1_g000041 Rmu_sc0002521.1_g000033
rosa_roxburghii	Rroxscaffold_1G00043470 Rroxscaffold_1G00043540 Rroxscaffold_5G00354920
rosa_rugosa	Rorug05G0165500
rosa_samantha	Rh4DG154400 Rh5BG256600 Rh5CG290200 Rh5DG265000
rosa_wichuraiana	Rw4G013240 Rw4G013280 Rw5G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	212, 401
AcuI	CTGAAG	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	255
AhdI	GACNNNNNGTC	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	273
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	3 cut(s)	156, 362, 535
AluI	AGCT	3 cut(s)	156, 362, 535
Alw26I	GTCTC	2 cut(s)	246, 575
Ama87I	CYCGRG	3 cut(s)	249, 284, 371
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	2 cut(s)	431, 566
ApoI	RAATTY	2 cut(s)	212, 401
AsuHPI	GGTGA	6 cut(s)	35, 127, 238, 436, 520, 571
AvaI	CYCGRG	3 cut(s)	249, 284, 371
BbvI	GCAGC	2 cut(s)	418, 553
BccI	CCATC	5 cut(s)	39, 94, 206, 532, 538
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	246, 575
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	2 cut(s)	432, 567
BisI	GCNGC	2 cut(s)	432, 567
BlsI	GCNGC	2 cut(s)	433, 568
Bme1390I	CCNGG	1 cut(s)	275
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmeT110I	CYCGRG	3 cut(s)	249, 284, 371
BmrFI	CCNGG	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	3 cut(s)	274, 344, 510
BseBI	CCWGG	1 cut(s)	275
BseGI	GGATG	2 cut(s)	31, 99
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	3 cut(s)	274, 344, 510
BseRI	GAGGAG	2 cut(s)	50, 55
BseXI	GCAGC	2 cut(s)	418, 553
BsgI	GTGCAG	2 cut(s)	225, 640
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	273
BsiEI	CGRYCG	1 cut(s)	222
BsiHKCI	CYCGRG	3 cut(s)	249, 284, 371
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	246, 575
BsnI	GGCC	1 cut(s)	273
BsoBI	CYCGRG	3 cut(s)	249, 284, 371
Bsp143I	GATC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	439
BspMAI	CTGCAG	2 cut(s)	436, 571
BsrI	ACTGG	3 cut(s)	274, 344, 510
BssMI	GATC	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	3 cut(s)	606, 623, 627
BstDEI	CTNAG	2 cut(s)	447, 609
BstF5I	GGATG	2 cut(s)	31, 99
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	2 cut(s)	246, 575
BstMBI	GATC	1 cut(s)	219
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	2 cut(s)	432, 567
BstV1I	GCAGC	2 cut(s)	418, 553
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	31, 99
BtsIMutI	CAGTG	2 cut(s)	144, 208
Cac8I	GCNNGC	3 cut(s)	606, 623, 627
CviAII	CATG	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	447, 609
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
DriI	GACNNNNNGTC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	308
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	3 cut(s)	249, 284, 371
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	553
FaiI	YATR	6 cut(s)	22, 354, 359, 551, 557, 632
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FatI	CATG	1 cut(s)	549
Fnu4HI	GCNGC	2 cut(s)	432, 567
FokI	GGATG	2 cut(s)	18, 86
Fsp4HI	GCNGC	2 cut(s)	432, 567
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	2 cut(s)	432, 567
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	553
HinfI	GANTC	1 cut(s)	328
HphI	GGTGA	6 cut(s)	35, 127, 238, 436, 520, 571
Hpy188I	TCNGA	2 cut(s)	190, 241
Hpy188III	TCNNGA	3 cut(s)	217, 373, 411
HpyAV	CCTTC	3 cut(s)	421, 479, 556
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	5 cut(s)	144, 206, 434, 569, 621
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	447, 609
Hsp92II	CATG	1 cut(s)	553
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	2 cut(s)	418, 553
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	4 cut(s)	243, 325, 473, 509
MluCI	AATT	4 cut(s)	212, 401, 416, 515
MmeI	TCCRAC	3 cut(s)	133, 290, 360
MnlI	CCTC	9 cut(s)	35, 51, 71, 76, 85, 274, 376, 380, 588
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	452
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	433, 568
Ple19I	CGATCG	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PstI	CTGCAG	2 cut(s)	436, 571
PvuI	CGATCG	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	554
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	2 cut(s)	432, 567
Sau3AI	GATC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	7 cut(s)	27, 77, 158, 364, 495, 537, 620
SfcI	CTRYAG	2 cut(s)	432, 567
Sfr274I	CTCGAG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	4 cut(s)	212, 401, 416, 515
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	3 cut(s)	222, 372, 410
TasI	AATT	4 cut(s)	212, 401, 416, 515
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	151, 208
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	431, 566
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	121, 498
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	151, 208
XapI	RAATTY	2 cut(s)	212, 401
XhoI	CTCGAG	1 cut(s)	371
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.