Rroxscaffold_1G00043540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004475
Physical Location & Seq
Forward (+)
62160077 .. 62162195
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043540.1

Sequence Viewer

Length: 753 bp
ATGGATAGAATTGAGGGAAAAGAAACCTATGCCAACTCAATAGTTCCAAATGATGGTTGGCTTAAGGTTCTATTTGGTTCCCACTTCTCTGGTTCAGGCATGGCTTCATTATTCCCACAATTCCTCTCCCATCCTAACCCTCACCCACAAAACCATCTCCTCTCCTCCCAAACCACCAAAAACCCATCACGGCATTACATTCGTATACCACCCAGAAAACACTGCATGTTCATCACCAAATGCACTGAACCAAACTCTACTCAATCCGACTTCCCAAGTCCAAACTCTGAAACCACCACCAGCGCAGAGAAATTCCCAATCGAAAAGCGAAGAAAATCGGAAATCACTCGAGACAGGAAGTCCTCAACTGGCCTGGAAAAGCCCGAGCCACCCAACTTTGAGATTGGTTGGAAGAGAACCAAAGAGATTCCACTGGAGAAGCCAGTAGGGTATGTCATAGCTGACTTCCTGGAGAAGTTGGAAGGCTTAATGGGGCGAGAATTCGGGTCCAGAGAGTTGCTGGTGAAGGCTGCAGAGATTGTGGCTGAGAGAGCAAGAGAGGAAGCAGAAGTGTTGAGAGATGAAGGTAAGGTGGAAGATAGAATGGTGACCGAATTGTTCAGGGTGCTGAAGCTGATGGAGATGGACATGGTTATGGTAAAGGCTGCAGTGAAGGACGAGACTTTGAGTGAGAGGCTTGAGCAGGCTAAAGCAAGGTGCAGGCAAGCTATACTTGTTGCTTTATCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.5

Weight (kDa)

8.36

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 53
AccI GTMKAC 1 cut(s) 205
AcsI RAATTY 2 cut(s) 311, 500
AcuI CTGAAG 1 cut(s) 650
AfiI CCNNNNNNNGG 1 cut(s) 53
AflII CTTAAG 1 cut(s) 62
AhdI GACNNNNNGTC 1 cut(s) 358
AjnI CCWGG 2 cut(s) 372, 468
AluBI AGCT 3 cut(s) 461, 634, 728
AluI AGCT 3 cut(s) 461, 634, 728
Alw26I GTCTC 2 cut(s) 345, 674
Ama87I CYCGRG 2 cut(s) 348, 383
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 2 cut(s) 530, 665
ApoI RAATTY 2 cut(s) 311, 500
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 4 cut(s) 134, 226, 535, 619
AvaI CYCGRG 2 cut(s) 348, 383
AvaII GGWCC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 517, 652
BccI CCATC 6 cut(s) 47, 138, 162, 193, 631, 637
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BciT130I CCWGG 2 cut(s) 374, 470
BcoDI GTCTC 2 cut(s) 345, 674
BfmI CTRYAG 2 cut(s) 531, 666
BfrI CTTAAG 1 cut(s) 62
BisI GCNGC 2 cut(s) 531, 666
BlsI GCNGC 2 cut(s) 532, 667
Bme1390I CCNGG 2 cut(s) 374, 470
Bme18I GGWCC 1 cut(s) 507
BmeRI GACNNNNNGTC 1 cut(s) 358
BmeT110I CYCGRG 2 cut(s) 348, 383
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 2 cut(s) 79, 508
BmrFI CCNGG 2 cut(s) 374, 470
BpmI CTGGAG 2 cut(s) 455, 491
BpuEI CTTGAG 1 cut(s) 719
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 373, 438, 443
BseBI CCWGG 2 cut(s) 374, 470
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 3 cut(s) 373, 438, 443
BseRI GAGGAG 2 cut(s) 149, 154
BseXI GCAGC 2 cut(s) 517, 652
BsgI GTGCAG 1 cut(s) 739
BshFI GGCC 1 cut(s) 372
BsiHKCI CYCGRG 2 cut(s) 348, 383
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 345, 674
BsnI GGCC 1 cut(s) 372
BsoBI CYCGRG 2 cut(s) 348, 383
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 538
BspLI GGNNCC 2 cut(s) 79, 508
BspMAI CTGCAG 2 cut(s) 535, 670
BspTI CTTAAG 1 cut(s) 62
BsrI ACTGG 3 cut(s) 373, 438, 443
BssNAI GTATAC 1 cut(s) 206
Bst1107I GTATAC 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 374, 470
Bst6I CTCTTC 1 cut(s) 407
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 705, 722, 726
BstDEI CTNAG 1 cut(s) 546
BstEII GGTNACC 1 cut(s) 607
BstF5I GGATG 1 cut(s) 130
BstHHI GCGC 1 cut(s) 305
BstMAI GTCTC 2 cut(s) 345, 674
BstMWI GCNNNNNNNGC 1 cut(s) 551
BstNI CCWGG 2 cut(s) 374, 470
BstNSI RCATGY 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 372, 468
BstSFI CTRYAG 2 cut(s) 531, 666
BstV1I GCAGC 2 cut(s) 517, 652
BstXI CCANNNNNNTGG 1 cut(s) 89
BstZ17I GTATAC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 2 cut(s) 220, 675
BtsIMutI CAGTG 4 cut(s) 220, 243, 431, 675
Cac8I GCNNGC 3 cut(s) 705, 722, 726
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 507
CviAII CATG 3 cut(s) 100, 226, 649
DdeI CTNAG 1 cut(s) 546
DriI GACNNNNNGTC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 407
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 650
Eco88I CYCGRG 2 cut(s) 348, 383
Eco91I GGTNACC 1 cut(s) 607
EcoO65I GGTNACC 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 500
EcoRII CCWGG 2 cut(s) 372, 468
FaeI CATG 3 cut(s) 103, 229, 652
FaiI YATR 9 cut(s) 30, 101, 206, 227, 453, 458, 650, 656, 731
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FatI CATG 3 cut(s) 99, 225, 648
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 531, 666
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 531, 666
GlaI GCGC 1 cut(s) 304
GluI GCNGC 2 cut(s) 531, 666
GsuI CTGGAG 2 cut(s) 455, 491
HaeIII GGCC 1 cut(s) 372
HhaI GCGC 1 cut(s) 305
Hin1II CATG 3 cut(s) 103, 229, 652
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HinfI GANTC 1 cut(s) 427
HphI GGTGA 4 cut(s) 134, 226, 535, 619
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 3 cut(s) 268, 289, 340
Hpy188III TCNNGA 2 cut(s) 350, 510
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 4 cut(s) 476, 520, 578, 667
HpyCH4V TGCA 5 cut(s) 225, 243, 533, 668, 720
HpyF10VI GCNNNNNNNGC 1 cut(s) 551
HpyF3I CTNAG 1 cut(s) 546
Hsp92II CATG 3 cut(s) 103, 229, 652
HspAI GCGC 1 cut(s) 303
Lsp1109I GCAGC 2 cut(s) 517, 652
MaeIII GTNAC 1 cut(s) 607
MboII GAAGA 3 cut(s) 342, 424, 608
MluCI AATT 5 cut(s) 9, 119, 311, 500, 614
MmeI TCCRAC 3 cut(s) 291, 389, 459
MnlI CCTC 8 cut(s) 7, 134, 150, 170, 175, 373, 553, 687
MseI TTAA 2 cut(s) 63, 488
MslI CAYNNNNRTG 1 cut(s) 653
MspCI CTTAAG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 374, 470
MvaI CCWGG 2 cut(s) 374, 470
MwoI GCNNNNNNNGC 1 cut(s) 551
NlaIII CATG 3 cut(s) 103, 229, 652
NlaIV GGNNCC 2 cut(s) 79, 508
NmuCI GTSAC 1 cut(s) 607
NspI RCATGY 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 348
PfeI GAWTC 1 cut(s) 427
PflMI CCANNNNNTGG 1 cut(s) 53
PfoI TCCNGGA 1 cut(s) 468
PkrI GCNGC 2 cut(s) 532, 667
Psp6I CCWGG 2 cut(s) 372, 468
PspEI GGTNACC 1 cut(s) 607
PspGI CCWGG 2 cut(s) 372, 468
PspN4I GGNNCC 2 cut(s) 79, 508
PspPI GGNCC 1 cut(s) 507
PstI CTGCAG 2 cut(s) 535, 670
RseI CAYNNNNRTG 1 cut(s) 653
SaqAI TTAA 2 cut(s) 63, 488
SatI GCNGC 2 cut(s) 531, 666
Sau96I GGNCC 1 cut(s) 507
ScrFI CCNGG 2 cut(s) 374, 470
SetI ASST 8 cut(s) 29, 69, 463, 589, 594, 636, 719, 730
SfcI CTRYAG 2 cut(s) 531, 666
Sfr274I CTCGAG 1 cut(s) 348
SinI GGWCC 1 cut(s) 507
SlaI CTCGAG 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 3 cut(s) 62, 348, 698
SmoI CTYRAG 3 cut(s) 62, 348, 698
Sse9I AATT 5 cut(s) 9, 119, 311, 500, 614
StyD4I CCNGG 2 cut(s) 372, 468
TaqI TCGA 2 cut(s) 321, 349
TaqII GACCGA 1 cut(s) 626
TasI AATT 5 cut(s) 9, 119, 311, 500, 614
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 2 cut(s) 63, 488
Tru9I TTAA 2 cut(s) 63, 488
TscAI CASTG 4 cut(s) 227, 250, 438, 675
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 2 cut(s) 530, 665
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 3 cut(s) 96, 220, 597
TspRI CASTG 4 cut(s) 227, 250, 438, 675
Van91I CCANNNNNTGG 1 cut(s) 53
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 507
XapI RAATTY 2 cut(s) 311, 500
XceI RCATGY 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 2 cut(s) 54, 517
XhoI CTCGAG 1 cut(s) 348
XmiI GTMKAC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.