Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002521.1

Orthogroup ID

OG0004475

Physical Location & Seq

Genomic Coordinates Reverse (-)

113591 .. 114780

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002521.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgaggcttccacgacatcggccacaggggatccaatcgtccaaagcccaattcggtggttgtagcttgctccgcataaaaccagaagtctgccatcgttcctcaccatcccagcctctaccctacctcagaccgtcatcggtggactcagaatccaggactacccgcatggcttcattattcccacaattcctctcccatcctaaccctcacctacgaaaccatctcctctcctcccaaaccaccaaaaacccatcacagcattacatccgtataccacccagaaaacactacttgttcgtcaccaaatgcactgcaccaaactctactcaacctgatttcccaagtccaaactctgaaaccaccaccagtgcagagaaattcccaatcgaaaagcgaagaaaatcggaaatcacccgagacaggaagtcctcaactggcctggaaaagcccgagccacccaactttgagattggctggaagagaaccaaagagattccactggagaagccagtagggtatgtcatagctgacttcctggagaagttggaaggcttaatggggcgagaattcgggtccagagagttgctggtgaaggctgcagagattgtggctgagagagcaagagaggaagcagaagtgttgagagatgatggtaaggtggaagatagaatggtgaccgaattgttcagggtgctgaagctgatggagatggacatggttatggtaaaggctgcagtgaaggacgagactttgagtgagaggcttgagcaggctaaagcaaggtgcaggcaagctatacttgttgctttatcgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

273

Amino Acids

31.19

Weight (kDa)

9.59

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51100
fragaria_vesca	FvH4_3g21830
malus_domestica	MD03G1211500.v1.1
prunus_persica	Prupe.4G202500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0410121 RchiOBHm_Chr5g0037571
rosa_laevigata	RLG00000008454 RLG00000008457 RLG00000008460 RLG00000008463 RLG00000008466 RLG00000008470 RLG00000008473 RLG00000008476 RLG00000008479 RLG00000008482 RLG00000008485 RLG00000008488 RLG00000033788
rosa_multiflora	Rmu_sc0000365.1_g000041 Rmu_sc0002521.1_g000033
rosa_roxburghii	Rroxscaffold_1G00043470 Rroxscaffold_1G00043540 Rroxscaffold_5G00354920
rosa_rugosa	Rorug05G0165500
rosa_samantha	Rh4DG154400 Rh5BG256600 Rh5CG290200 Rh5DG265000
rosa_wichuraiana	Rw4G013240 Rw4G013280 Rw5G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	274
AciI	CCGC	2 cut(s)	73, 166
AclWI	GGATC	2 cut(s)	25, 38
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	2 cut(s)	380, 569
AcuI	CTGAAG	1 cut(s)	719
AfiI	CCNNNNNNNGG	1 cut(s)	423
AhdI	GACNNNNNGTC	1 cut(s)	427
AjnI	CCWGG	3 cut(s)	155, 441, 537
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	4 cut(s)	66, 530, 703, 797
AluI	AGCT	4 cut(s)	66, 530, 703, 797
Alw26I	GTCTC	2 cut(s)	414, 743
AlwI	GGATC	2 cut(s)	25, 38
Ama87I	CYCGRG	2 cut(s)	417, 452
AoxI	GGCC	2 cut(s)	20, 439
ApeKI	GCWGC	2 cut(s)	599, 734
ApoI	RAATTY	2 cut(s)	380, 569
AspS9I	GGNCC	1 cut(s)	576
AsuHPI	GGTGA	6 cut(s)	96, 203, 295, 406, 604, 688
AvaI	CYCGRG	2 cut(s)	417, 452
AvaII	GGWCC	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	586, 721
BccI	CCATC	8 cut(s)	102, 115, 207, 231, 262, 647, 700, 706
BciT130I	CCWGG	3 cut(s)	157, 443, 539
BcoDI	GTCTC	2 cut(s)	414, 743
BfmI	CTRYAG	2 cut(s)	600, 735
BisI	GCNGC	2 cut(s)	600, 735
BlsI	GCNGC	2 cut(s)	601, 736
Bme1390I	CCNGG	3 cut(s)	157, 443, 539
Bme18I	GGWCC	1 cut(s)	576
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmeT110I	CYCGRG	2 cut(s)	417, 452
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	32, 577
BmrFI	CCNGG	3 cut(s)	157, 443, 539
BpmI	CTGGAG	2 cut(s)	524, 560
BpuEI	CTTGAG	1 cut(s)	788
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	4 cut(s)	369, 442, 507, 512
BseBI	CCWGG	3 cut(s)	157, 443, 539
BseGI	GGATG	3 cut(s)	107, 199, 267
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	142, 162, 606
BseNI	ACTGG	4 cut(s)	369, 442, 507, 512
BseRI	GAGGAG	2 cut(s)	218, 223
BseXI	GCAGC	2 cut(s)	586, 721
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	3 cut(s)	300, 393, 808
BshFI	GGCC	2 cut(s)	22, 441
BsiHKCI	CYCGRG	2 cut(s)	417, 452
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	2 cut(s)	414, 743
BsnI	GGCC	2 cut(s)	22, 441
BsoBI	CYCGRG	2 cut(s)	417, 452
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	2 cut(s)	73, 166
BspANI	GGCC	2 cut(s)	22, 441
BspCNI	CTCAG	3 cut(s)	141, 161, 607
BspLI	GGNNCC	2 cut(s)	32, 577
BspMAI	CTGCAG	2 cut(s)	604, 739
BspPI	GGATC	2 cut(s)	25, 38
BsrI	ACTGG	4 cut(s)	369, 442, 507, 512
BssMI	GATC	1 cut(s)	30
BssNAI	GTATAC	1 cut(s)	275
Bst1107I	GTATAC	1 cut(s)	275
Bst2UI	CCWGG	3 cut(s)	157, 443, 539
Bst4CI	ACNGT	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	68, 774, 791, 795
BstDEI	CTNAG	3 cut(s)	128, 148, 615
BstEII	GGTNACC	1 cut(s)	676
BstF5I	GGATG	3 cut(s)	107, 199, 267
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	2 cut(s)	414, 743
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 620
BstNI	CCWGG	3 cut(s)	157, 443, 539
BstPI	GGTNACC	1 cut(s)	676
BstSCI	CCNGG	3 cut(s)	155, 441, 537
BstSFI	CTRYAG	2 cut(s)	600, 735
BstV1I	GCAGC	2 cut(s)	586, 721
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	30
BstZ17I	GTATAC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	22, 441
BtsCI	GGATG	3 cut(s)	107, 199, 267
BtsI	GCAGTG	2 cut(s)	312, 744
BtsIMutI	CAGTG	4 cut(s)	312, 376, 500, 744
Cac8I	GCNNGC	4 cut(s)	68, 774, 791, 795
Cfr13I	GGNCC	1 cut(s)	576
CviAII	CATG	2 cut(s)	169, 718
DdeI	CTNAG	3 cut(s)	128, 148, 615
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DriI	GACNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	20
Eam1104I	CTCTTC	1 cut(s)	476
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	719
Eco88I	CYCGRG	2 cut(s)	417, 452
Eco91I	GGTNACC	1 cut(s)	676
EcoO65I	GGTNACC	1 cut(s)	676
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	155, 441, 537
FaeI	CATG	2 cut(s)	172, 721
FaiI	YATR	8 cut(s)	77, 170, 275, 522, 527, 719, 725, 800
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FatI	CATG	2 cut(s)	168, 717
FauI	CCCGC	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	600, 735
FokI	GGATG	3 cut(s)	94, 186, 254
Fsp4HI	GCNGC	2 cut(s)	600, 735
GluI	GCNGC	2 cut(s)	600, 735
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	2 cut(s)	524, 560
HaeIII	GGCC	2 cut(s)	22, 441
Hin1II	CATG	2 cut(s)	172, 721
HinfI	GANTC	3 cut(s)	146, 152, 496
HphI	GGTGA	6 cut(s)	96, 203, 295, 406, 604, 688
Hpy166II	GTNNAC	2 cut(s)	145, 275
Hpy188I	TCNGA	4 cut(s)	131, 151, 358, 409
Hpy188III	TCNNGA	1 cut(s)	579
Hpy8I	GTNNAC	2 cut(s)	145, 275
HpyAV	CCTTC	3 cut(s)	545, 589, 736
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4V	TGCA	6 cut(s)	312, 317, 374, 602, 737, 789
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 620
HpyF3I	CTNAG	3 cut(s)	128, 148, 615
Hsp92II	CATG	2 cut(s)	172, 721
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	2 cut(s)	586, 721
MaeIII	GTNAC	2 cut(s)	301, 676
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	411, 493, 677
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	5 cut(s)	50, 188, 380, 569, 683
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	528
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	722
MspR9I	CCNGG	3 cut(s)	157, 443, 539
MvaI	CCWGG	3 cut(s)	157, 443, 539
MwoI	GCNNNNNNNGC	2 cut(s)	72, 620
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	2 cut(s)	172, 721
NlaIV	GGNNCC	2 cut(s)	32, 577
NmuCI	GTSAC	2 cut(s)	301, 676
PfeI	GAWTC	2 cut(s)	152, 496
PfoI	TCCNGGA	2 cut(s)	155, 537
PkrI	GCNGC	2 cut(s)	601, 736
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Psp6I	CCWGG	3 cut(s)	155, 441, 537
PspEI	GGTNACC	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	3 cut(s)	155, 441, 537
PspN4I	GGNNCC	2 cut(s)	32, 577
PspPI	GGNCC	1 cut(s)	576
PstI	CTGCAG	2 cut(s)	604, 739
PsuI	RGATCY	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	722
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	2 cut(s)	600, 735
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	576
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	3 cut(s)	157, 443, 539
SetI	ASST	9 cut(s)	68, 129, 216, 337, 532, 663, 705, 788, 799
SfcI	CTRYAG	2 cut(s)	600, 735
SinI	GGWCC	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	5 cut(s)	50, 188, 380, 569, 683
SsiI	CCGC	2 cut(s)	73, 166
StyD4I	CCNGG	3 cut(s)	155, 441, 537
TaaI	ACNGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	390
TaqII	GACCGA	1 cut(s)	695
TasI	AATT	5 cut(s)	50, 188, 380, 569, 683
TfiI	GAWTC	2 cut(s)	152, 496
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	4 cut(s)	319, 376, 507, 744
TseFI	GTSAC	2 cut(s)	301, 676
TseI	GCWGC	2 cut(s)	599, 734
Tsp45I	GTSAC	2 cut(s)	301, 676
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	4 cut(s)	319, 376, 507, 744
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	2 cut(s)	380, 569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.