Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004475

Physical Location & Seq

Genomic Coordinates Reverse (-)

12601015 .. 12601678

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G202500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTTCCATATTCCCACAATTCCTCTCAACTCCAAACTCTCACCCACTAAACCATCTCCTCCCAACCCAAACCACCACAAACCCACCTCAGCTTTCCACCCACAGACCACACAGAAAACACTTGTCCCTCACCACATGCACTCCTCCAAACTCCACTCAACCAGATTTTCCAAGTCCAGACTCTGAAACCACCACCAGTGCAGAGACATTTCCGATCGAAAAGCGCAGAAAATCGGAAATCACCCGGGACAGGAGGAGGTCAGAAACTGGCCTTGTAAAGCCTGAGCCACCCAACTTTGAGATTGGTTGGAAGAGAACCAAAGAGATAAAGCTAGAGAAGCCAATAGGGTATGTGATAGCTGACTTCTTGGAGAAGTTGGAGAGCTTAATGGGAAAAGAATTTGGTTCCGCTGACTTGTTGGTGAAAGTTGCAGAGATTGTGGCTGAGAGAGCAAGAGAGGAAGCAGAGGTGTTGAGAGATGAAGGCAAAGTGGAAGACAGAATGGTGACCGAGTTGTTTAGGGTGTTGAAGTTGATAGAAATGGACATGGTTATGATAAAGGCTGCAGTGAAGGAAGAGACTTTGAATGAGAGGCTTGAGCAGGCCAAGGCACGCTGCAGGCAAGCTATACTTGTTGCTTTGTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.73

Weight (kDa)

6.99

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51100
fragaria_vesca	FvH4_3g21830
malus_domestica	MD03G1211500.v1.1
prunus_persica	Prupe.4G202500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0410121 RchiOBHm_Chr5g0037571
rosa_laevigata	RLG00000008454 RLG00000008457 RLG00000008460 RLG00000008463 RLG00000008466 RLG00000008470 RLG00000008473 RLG00000008476 RLG00000008479 RLG00000008482 RLG00000008485 RLG00000008488 RLG00000033788
rosa_multiflora	Rmu_sc0000365.1_g000041 Rmu_sc0002521.1_g000033
rosa_roxburghii	Rroxscaffold_1G00043470 Rroxscaffold_1G00043540 Rroxscaffold_5G00354920
rosa_rugosa	Rorug05G0165500
rosa_samantha	Rh4DG154400 Rh5BG256600 Rh5CG290200 Rh5DG265000
rosa_wichuraiana	Rw4G013240 Rw4G013280 Rw5G023600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	411
AcsI	RAATTY	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	532, 589
AluBI	AGCT	5 cut(s)	94, 334, 362, 387, 629
AluI	AGCT	5 cut(s)	94, 334, 362, 387, 629
Alw26I	GTCTC	2 cut(s)	200, 575
AlwNI	CAGNNNCTG	2 cut(s)	185, 269
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	2 cut(s)	271, 606
ApeKI	GCWGC	2 cut(s)	566, 618
ApoI	RAATTY	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	228
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	5 cut(s)	35, 124, 235, 436, 520
AvaI	CYCGRG	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	504
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	553, 605
BccI	CCATC	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	2 cut(s)	200, 575
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	2 cut(s)	567, 619
BisI	GCNGC	2 cut(s)	567, 619
BlsI	GCNGC	2 cut(s)	568, 620
Bme1390I	CCNGG	2 cut(s)	247, 248
BmeT110I	CYCGRG	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	247, 248
BpiI	GAAGAC	1 cut(s)	504
Bpu10I	CCTNAGC	2 cut(s)	90, 285
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	2 cut(s)	247, 248
BsaJI	CCNNGG	2 cut(s)	246, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	198, 274
BseDI	CCNNGG	2 cut(s)	246, 609
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	3 cut(s)	104, 276, 438
BseNI	ACTGG	2 cut(s)	198, 274
BseRI	GAGGAG	3 cut(s)	50, 135, 271
BseXI	GCAGC	2 cut(s)	553, 605
BsgI	GTGCAG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	273, 608
BsiEI	CGRYCG	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	2 cut(s)	112, 263
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	200, 575
BsmFI	GGGAC	2 cut(s)	112, 263
BsnI	GGCC	2 cut(s)	273, 608
BsoBI	CYCGRG	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	273, 608
BspCNI	CTCAG	3 cut(s)	103, 277, 439
BspLI	GGNNCC	1 cut(s)	409
BspMAI	CTGCAG	2 cut(s)	571, 623
BsrI	ACTGG	2 cut(s)	198, 274
BssECI	CCNNGG	2 cut(s)	246, 609
BssMI	GATC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	609
Bst6I	CTCTTC	2 cut(s)	308, 573
BstC8I	GCNNGC	4 cut(s)	606, 616, 623, 627
BstDEI	CTNAG	3 cut(s)	90, 285, 447
BstEII	GGTNACC	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	200, 575
BstMBI	GATC	1 cut(s)	216
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 452
BstNSI	RCATGY	1 cut(s)	141
BstPI	GGTNACC	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	245, 246
BstSFI	CTRYAG	2 cut(s)	567, 619
BstV1I	GCAGC	2 cut(s)	553, 605
BstV2I	GAAGAC	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	273, 608
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	205, 576
Cac8I	GCNNGC	4 cut(s)	606, 616, 623, 627
CaiI	CAGNNNCTG	2 cut(s)	185, 269
CfoI	GCGC	1 cut(s)	228
Cfr9I	CCCGGG	1 cut(s)	246
CviAII	CATG	2 cut(s)	138, 550
DdeI	CTNAG	3 cut(s)	90, 285, 447
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	308, 573
EarI	CTCTTC	2 cut(s)	308, 573
Eco130I	CCWWGG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	246
Eco91I	GGTNACC	1 cut(s)	508
EcoO65I	GGTNACC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	2 cut(s)	141, 553
FaiI	YATR	6 cut(s)	11, 139, 354, 551, 557, 632
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	2 cut(s)	112, 263
FatI	CATG	2 cut(s)	137, 549
Fnu4HI	GCNGC	2 cut(s)	567, 619
Fsp4HI	GCNGC	2 cut(s)	567, 619
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	567, 619
HaeIII	GGCC	2 cut(s)	273, 608
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	141, 553
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	5 cut(s)	35, 124, 235, 436, 520
Hpy188I	TCNGA	4 cut(s)	187, 216, 238, 265
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	479, 568
HpyCH4V	TGCA	5 cut(s)	141, 203, 434, 569, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 452
HpyF3I	CTNAG	3 cut(s)	90, 285, 447
Hsp92II	CATG	2 cut(s)	141, 553
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	216
LpnPI	CCDG	9 cut(s)	177, 192, 211, 238, 255, 260, 297, 590, 607
Lsp1109I	GCAGC	2 cut(s)	553, 605
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	3 cut(s)	325, 509, 590
MluCI	AATT	2 cut(s)	20, 401
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	2 cut(s)	290, 360
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	247, 248
MwoI	GCNNNNNNNGC	2 cut(s)	340, 452
NciI	CCSGG	2 cut(s)	247, 248
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	2 cut(s)	141, 553
NlaIV	GGNNCC	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	568, 620
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PspEI	GGTNACC	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	409
PstI	CTGCAG	2 cut(s)	571, 623
PstNI	CAGNNNCTG	2 cut(s)	185, 269
PvuI	CGATCG	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	554
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	2 cut(s)	567, 619
Sau3AI	GATC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	247, 248
SetI	ASST	8 cut(s)	91, 96, 263, 336, 364, 389, 474, 631
SfcI	CTRYAG	2 cut(s)	567, 619
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	2 cut(s)	20, 401
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	245, 246
StyI	CCWWGG	1 cut(s)	609
TaqI	TCGA	1 cut(s)	219
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	2 cut(s)	20, 401
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	205, 576
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	566, 618
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	1 cut(s)	498
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	2 cut(s)	205, 576
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	141
XmaI	CCCGGG	1 cut(s)	246
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.