FvH4_3g23561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018401
Physical Location & Seq
Forward (+)
16646834 .. 16647867
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23561.t1

Sequence Viewer

Length: 690 bp
ATGGATTTGTACCTGTTGATGAAGTTACCAAACAAATGGTGGTGTCCCGGTGAAAAGGAGGATAATCCAAGAGTTATCTTAAATGACTTTTACAATTTACAGTCATCATCTCTAGATCTGTCCCAGAATCTTTTACTACAGACAGAGATCAAGATACTGTTAGACCTCTACAACGATAGGAGTTTCTTTTGCTTTCGGAAATTTTCAAGCCCTCGGAGATTGCCTAAGCAAGACTCCAATGATGATCGAAGTATTAGCTTGACTACATCGATTGTCGAGTTCATGAAGCCATCATGCTTATGGAGAGAAAAGAGCATGATGTGGAAAAGGTTGGTGCAGCAGCCCAAAAGGCAGAAGAAGCAGCAGAAGGTGAAAATGGTGAAGGAGCTCACTCTAGAGGAGTGGTTCTCAACATCGTCGCCATGCAGAGATGAATCAGCTGAACACAACACCTGGGTTTTTCCCTTTTCTCATGGTGATAATGATGATGATGCTAAGTTTAATTCTAGGCACAGTTTTTCTCAGCAGAGACTGTTGATCGAAGTGGTTGACTGTGGAAGAAGAAGAAGTGATGTTTCTTGTTTGAGCTCAAGGAAGAGTTCGAAGGTGAAGAAAAGGGTCAGCTTTAGATTACCAGAAGAGGCTGATATATTCATTTTCTGTTCACCAAATGCAGATTCTGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

27.11

Weight (kDa)

8.79

Isoelectric Point (pI)

75.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018401)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23561
pyrus_communis pycom11g18480
rosa_laevigata RLG00000034079
rosa_roxburghii Rroxscaffold_1G00038950
rosa_rugosa Rorug05G0193600
rosa_samantha Rh5AG279300 Rh5BG283700 Rh5BG284600 Rh5CG316500 Rh5DG293400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 1 cut(s) 207
AjnI CCWGG 1 cut(s) 452
AjuI GAANNNNNNNTTGG 1 cut(s) 661
AluBI AGCT 5 cut(s) 258, 388, 440, 588, 624
AluI AGCT 5 cut(s) 258, 388, 440, 588, 624
Alw21I GWGCWC 2 cut(s) 390, 590
Alw26I GTCTC 1 cut(s) 523
AlwNI CAGNNNCTG 2 cut(s) 532, 680
ApeKI GCWGC 3 cut(s) 337, 340, 361
ApoI RAATTY 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 6 cut(s) 62, 382, 391, 488, 619, 657
AsuII TTCGAA 1 cut(s) 602
BanII GRGCYC 2 cut(s) 390, 590
Bbv12I GWGCWC 2 cut(s) 390, 590
BbvI GCAGC 3 cut(s) 349, 352, 373
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 454
BcnI CCSGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 3 cut(s) 113, 395, 507
BfmI CTRYAG 1 cut(s) 137
BglI GCCNNNNNGGC 1 cut(s) 349
BglII AGATCT 1 cut(s) 115
BisI GCNGC 3 cut(s) 338, 341, 362
BlsI GCNGC 3 cut(s) 339, 342, 363
Bme1390I CCNGG 2 cut(s) 48, 454
BmrFI CCNGG 2 cut(s) 48, 454
BmsI GCATC 1 cut(s) 481
BplI GAGNNNNNCTC 2 cut(s) 392, 424
Bpu10I CCTNAGC 1 cut(s) 225
Bpu14I TTCGAA 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 574
BpuMI CCSGG 1 cut(s) 48
Bsa29I ATCGAT 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 212, 453
BseBI CCWGG 1 cut(s) 454
BseCI ATCGAT 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 212, 453
BseMII CTCAG 1 cut(s) 536
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 349, 352, 373
BsgI GTGCAG 1 cut(s) 356
BshVI ATCGAT 1 cut(s) 269
BsiHKAI GWGCWC 2 cut(s) 390, 590
BsiSI CCGG 1 cut(s) 48
BslFI GGGAC 2 cut(s) 30, 106
BsmAI GTCTC 1 cut(s) 523
BsmFI GGGAC 2 cut(s) 30, 106
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 2 cut(s) 390, 590
Bsp143I GATC 4 cut(s) 115, 147, 244, 537
BspCNI CTCAG 1 cut(s) 535
BspDI ATCGAT 1 cut(s) 269
BspHI TCATGA 1 cut(s) 282
BspT104I TTCGAA 1 cut(s) 602
BssECI CCNNGG 2 cut(s) 212, 453
BssMI GATC 4 cut(s) 115, 147, 244, 537
Bst2UI CCWGG 1 cut(s) 454
Bst4CI ACNGT 5 cut(s) 102, 159, 515, 534, 554
Bst6I CTCTTC 2 cut(s) 590, 633
BstBI TTCGAA 1 cut(s) 602
BstDEI CTNAG 3 cut(s) 225, 495, 522
BstKTI GATC 4 cut(s) 118, 150, 247, 540
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 4 cut(s) 115, 147, 244, 537
BstMWI GCNNNNNNNGC 2 cut(s) 349, 358
BstNI CCWGG 1 cut(s) 454
BstSCI CCNGG 2 cut(s) 46, 452
BstSFI CTRYAG 1 cut(s) 137
BstV1I GCAGC 3 cut(s) 349, 352, 373
BstX2I RGATCY 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 36
BstYI RGATCY 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 269
BsuTUI ATCGAT 1 cut(s) 269
CaiI CAGNNNCTG 2 cut(s) 532, 680
CciI TCATGA 1 cut(s) 282
ClaI ATCGAT 1 cut(s) 269
Csp6I GTAC 1 cut(s) 10
CviAII CATG 5 cut(s) 283, 294, 316, 423, 473
CviJI RGCY 9 cut(s) 210, 258, 289, 343, 388, 440, 588, 624, 644
CviKI_1 RGCY 9 cut(s) 210, 258, 289, 343, 388, 440, 588, 624, 644
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 3 cut(s) 225, 495, 522
DpnI GATC 4 cut(s) 117, 149, 246, 539
DpnII GATC 4 cut(s) 115, 147, 244, 537
Eam1104I CTCTTC 2 cut(s) 590, 633
EarI CTCTTC 2 cut(s) 590, 633
Ecl136II GAGCTC 2 cut(s) 388, 588
Eco24I GRGCYC 2 cut(s) 390, 590
Eco53kI GAGCTC 2 cut(s) 388, 588
EcoICRI GAGCTC 2 cut(s) 388, 588
EcoRII CCWGG 1 cut(s) 452
EcoT38I GRGCYC 2 cut(s) 390, 590
FaeI CATG 5 cut(s) 286, 297, 319, 426, 476
FaiI YATR 7 cut(s) 284, 295, 301, 317, 424, 474, 650
FaqI GGGAC 2 cut(s) 30, 106
FatI CATG 5 cut(s) 282, 293, 315, 422, 472
Fnu4HI GCNGC 3 cut(s) 338, 341, 362
FriOI GRGCYC 2 cut(s) 390, 590
Fsp4HI GCNGC 3 cut(s) 338, 341, 362
FspBI CTAG 3 cut(s) 113, 395, 507
GluI GCNGC 3 cut(s) 338, 341, 362
HapII CCGG 1 cut(s) 48
Hin1II CATG 5 cut(s) 286, 297, 319, 426, 476
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 4 cut(s) 127, 233, 434, 677
HpaII CCGG 1 cut(s) 48
HphI GGTGA 6 cut(s) 62, 382, 391, 488, 619, 657
Hpy166II GTNNAC 2 cut(s) 550, 665
Hpy188I TCNGA 3 cut(s) 198, 216, 682
Hpy188III TCNNGA 4 cut(s) 113, 151, 283, 395
Hpy8I GTNNAC 2 cut(s) 550, 665
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 3 cut(s) 361, 376, 598
HpyCH4III ACNGT 5 cut(s) 102, 159, 515, 534, 554
HpyCH4V TGCA 3 cut(s) 337, 426, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 358
HpyF3I CTNAG 3 cut(s) 225, 495, 522
Hsp92II CATG 5 cut(s) 286, 297, 319, 426, 476
Kzo9I GATC 4 cut(s) 115, 147, 244, 537
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 6 cut(s) 26, 61, 137, 439, 466, 648
Lsp1109I GCAGC 3 cut(s) 349, 352, 373
LweI GCATC 1 cut(s) 481
MaeI CTAG 3 cut(s) 113, 395, 507
MaeIII GTNAC 1 cut(s) 24
MalI GATC 4 cut(s) 117, 149, 246, 539
MboI GATC 4 cut(s) 115, 147, 244, 537
MboII GAAGA 7 cut(s) 367, 570, 573, 576, 607, 622, 650
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 390, 590
MluCI AATT 3 cut(s) 94, 200, 502
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 5 cut(s) 52, 176, 222, 391, 634
MseI TTAA 2 cut(s) 80, 501
MslI CAYNNNNRTG 1 cut(s) 298
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 2 cut(s) 48, 454
MvaI CCWGG 1 cut(s) 454
MwoI GCNNNNNNNGC 2 cut(s) 349, 358
NciI CCSGG 1 cut(s) 48
NdeII GATC 4 cut(s) 115, 147, 244, 537
NlaIII CATG 5 cut(s) 286, 297, 319, 426, 476
NspV TTCGAA 1 cut(s) 602
PagI TCATGA 1 cut(s) 282
PfeI GAWTC 3 cut(s) 127, 434, 677
PkrI GCNGC 3 cut(s) 339, 342, 363
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp124BI GAGCTC 2 cut(s) 390, 590
Psp6I CCWGG 1 cut(s) 452
PspGI CCWGG 1 cut(s) 452
PstNI CAGNNNCTG 2 cut(s) 532, 680
PsuI RGATCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 298
SacI GAGCTC 2 cut(s) 390, 590
SaqAI TTAA 2 cut(s) 80, 501
SatI GCNGC 3 cut(s) 338, 341, 362
Sau3AI GATC 4 cut(s) 115, 147, 244, 537
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 48, 454
SduI GDGCHC 2 cut(s) 390, 590
SfaNI GCATC 1 cut(s) 481
SfcI CTRYAG 1 cut(s) 137
SfuI TTCGAA 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 3 cut(s) 94, 200, 502
SspMI CTAG 3 cut(s) 113, 395, 507
SstI GAGCTC 2 cut(s) 390, 590
StyD4I CCNGG 2 cut(s) 46, 452
TaaI ACNGT 5 cut(s) 102, 159, 515, 534, 554
TaqI TCGA 5 cut(s) 247, 269, 276, 540, 602
TasI AATT 3 cut(s) 94, 200, 502
TfiI GAWTC 3 cut(s) 127, 434, 677
Tru1I TTAA 2 cut(s) 80, 501
Tru9I TTAA 2 cut(s) 80, 501
TseI GCWGC 3 cut(s) 337, 340, 361
TspDTI ATGAA 5 cut(s) 35, 271, 299, 447, 643
XapI RAATTY 1 cut(s) 200
XbaI TCTAGA 2 cut(s) 112, 394
XcmI CCANNNNNNNNNTGG 2 cut(s) 36, 297
XspI CTAG 3 cut(s) 113, 395, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.