Rh5AG279300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018401
Physical Location & Seq
Forward (+)
37756077 .. 37756875
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG279300.1

Sequence Viewer

Length: 534 bp
ATGGGTAGGAGTCTCCTCTGCTTTCGGCAATTTTCAAGCCCTGGTAGATTGCCTAAGCAAGACTCCGATGATGGTCGAAGAATTAGCTTCACAACATCGATTGTCGAGTTCATGAAGCCATCATGCTTATGGAGAGAAAAGAGCGTGAGGCGGAAAACGTTAGTGCAGCTGGCCAAAAGGCAGAAGAAGCAGCAGAAGGTGAAAATGGTGAAGGAGCTCACTCTAGAGGAGTGGTTTTCAATAACGTCGCCATGCAGAGATGACAATAATAGCCTTCGCATCAATGGATCAGCTGAACACAACACCTGGGTTTTTCCATCTCCAGATGATGATGATGTTATGTCAAATTCTAGGCACAGTTTTTCTCAGCAGAGGCTGGTGATTGAAGTGGTTGACTGTGGAAGAAGAAGAAGTGATGTTTCTTGTTTGAGCTCAAGGAAGAGTGGGAAGGTGAAGAAAAGGGTCAGCTTTAGATTACCAGAAGAGGCTGATATAATCATTTTCTGTTCTCCAAAAGCAGATTATGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.54

Weight (kDa)

9.56

Isoelectric Point (pI)

75.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018401)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23561
pyrus_communis pycom11g18480
rosa_laevigata RLG00000034079
rosa_roxburghii Rroxscaffold_1G00038950
rosa_rugosa Rorug05G0193600
rosa_samantha Rh5AG279300 Rh5BG283700 Rh5BG284600 Rh5CG316500 Rh5DG293400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 151
AclI AACGTT 1 cut(s) 158
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 1 cut(s) 346
AgsI TTSAA 3 cut(s) 36, 240, 386
AjnI CCWGG 2 cut(s) 40, 305
AluBI AGCT 6 cut(s) 87, 169, 217, 293, 432, 468
AluI AGCT 6 cut(s) 87, 169, 217, 293, 432, 468
Alw21I GWGCWC 2 cut(s) 219, 434
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 376
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 166, 190
ApoI RAATTY 1 cut(s) 346
AsuHPI GGTGA 4 cut(s) 211, 220, 391, 463
BalI TGGCCA 1 cut(s) 173
BanII GRGCYC 2 cut(s) 219, 434
Bbv12I GWGCWC 2 cut(s) 219, 434
BbvI GCAGC 2 cut(s) 178, 202
BccI CCATC 3 cut(s) 65, 127, 325
BciT130I CCWGG 2 cut(s) 42, 307
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 2 cut(s) 224, 351
BisI GCNGC 2 cut(s) 167, 191
BlsI GCNGC 2 cut(s) 168, 192
Bme1390I CCNGG 2 cut(s) 42, 307
BmrFI CCNGG 2 cut(s) 42, 307
BmsI GCATC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 418
Bsa29I ATCGAT 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 40, 306
BseBI CCWGG 2 cut(s) 42, 307
BseCI ATCGAT 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 40, 306
BseMII CTCAG 1 cut(s) 380
BseRI GAGGAG 2 cut(s) 5, 242
BseXI GCAGC 2 cut(s) 178, 202
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 173
BshVI ATCGAT 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 219, 434
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 219, 434
Bsp143I GATC 1 cut(s) 287
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 379
BspDI ATCGAT 1 cut(s) 98
BspHI TCATGA 1 cut(s) 111
BspPI GGATC 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 40, 306
BssMI GATC 1 cut(s) 287
Bst2UI CCWGG 2 cut(s) 42, 307
Bst4CI ACNGT 2 cut(s) 359, 398
Bst6I CTCTTC 2 cut(s) 434, 477
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 2 cut(s) 54, 366
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 1 cut(s) 287
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNI CCWGG 2 cut(s) 42, 307
BstSCI CCNGG 2 cut(s) 40, 305
BstV1I GCAGC 2 cut(s) 178, 202
Bsu15I ATCGAT 1 cut(s) 98
BsuRI GGCC 1 cut(s) 173
BsuTUI ATCGAT 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 171
CaiI CAGNNNCTG 1 cut(s) 376
CciI TCATGA 1 cut(s) 111
ClaI ATCGAT 1 cut(s) 98
CviAII CATG 3 cut(s) 112, 123, 252
DdeI CTNAG 2 cut(s) 54, 366
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 434, 477
EarI CTCTTC 2 cut(s) 434, 477
EciI GGCGGA 1 cut(s) 166
Ecl136II GAGCTC 2 cut(s) 217, 432
Eco24I GRGCYC 2 cut(s) 219, 434
Eco53kI GAGCTC 2 cut(s) 217, 432
EcoICRI GAGCTC 2 cut(s) 217, 432
EcoRII CCWGG 2 cut(s) 40, 305
EcoT38I GRGCYC 2 cut(s) 219, 434
FaeI CATG 3 cut(s) 115, 126, 255
FaiI YATR 7 cut(s) 113, 124, 130, 253, 341, 494, 525
FatI CATG 3 cut(s) 111, 122, 251
Fnu4HI GCNGC 2 cut(s) 167, 191
FriOI GRGCYC 2 cut(s) 219, 434
Fsp4HI GCNGC 2 cut(s) 167, 191
FspBI CTAG 2 cut(s) 224, 351
GluI GCNGC 2 cut(s) 167, 191
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 3 cut(s) 115, 126, 255
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 2 cut(s) 10, 62
HphI GGTGA 4 cut(s) 211, 220, 391, 463
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 3 cut(s) 112, 224, 323
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 4 cut(s) 190, 205, 284, 442
HpyCH4III ACNGT 2 cut(s) 359, 398
HpyCH4IV ACGT 2 cut(s) 158, 245
HpyCH4V TGCA 2 cut(s) 166, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 2 cut(s) 54, 366
HpySE526I ACGT 2 cut(s) 158, 245
Hsp92II CATG 3 cut(s) 115, 126, 255
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 8 cut(s) 27, 54, 155, 292, 319, 336, 362, 492
Lsp1109I GCAGC 2 cut(s) 178, 202
LweI GCATC 1 cut(s) 288
MaeI CTAG 2 cut(s) 224, 351
MaeII ACGT 2 cut(s) 158, 245
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 8 cut(s) 90, 196, 414, 417, 420, 451, 466, 494
MhlI GDGCHC 2 cut(s) 219, 434
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 3 cut(s) 29, 81, 346
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 2 cut(s) 19, 56
MnlI CCTC 5 cut(s) 26, 141, 220, 366, 478
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 127
Msp20I TGGCCA 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 169, 293
MspR9I CCNGG 2 cut(s) 42, 307
MvaI CCWGG 2 cut(s) 42, 307
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeII GATC 1 cut(s) 287
NlaIII CATG 3 cut(s) 115, 126, 255
PagI TCATGA 1 cut(s) 111
PkrI GCNGC 2 cut(s) 168, 192
PleI GAGTC 2 cut(s) 18, 56
PpsI GAGTC 2 cut(s) 18, 56
Psp124BI GAGCTC 2 cut(s) 219, 434
Psp1406I AACGTT 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 40, 305
PspGI CCWGG 2 cut(s) 40, 305
PstNI CAGNNNCTG 1 cut(s) 376
PvuII CAGCTG 2 cut(s) 169, 293
RseI CAYNNNNRTG 1 cut(s) 127
SacI GAGCTC 2 cut(s) 219, 434
SatI GCNGC 2 cut(s) 167, 191
Sau3AI GATC 1 cut(s) 287
SchI GAGTC 2 cut(s) 19, 56
ScrFI CCNGG 2 cut(s) 42, 307
SduI GDGCHC 2 cut(s) 219, 434
SfaNI GCATC 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 3 cut(s) 29, 81, 346
SsiI CCGC 1 cut(s) 151
SspMI CTAG 2 cut(s) 224, 351
SstI GAGCTC 2 cut(s) 219, 434
StyD4I CCNGG 2 cut(s) 40, 305
TaaI ACNGT 2 cut(s) 359, 398
TaiI ACGT 2 cut(s) 161, 248
TaqI TCGA 3 cut(s) 76, 98, 105
TasI AATT 3 cut(s) 29, 81, 346
TseI GCWGC 2 cut(s) 166, 190
TspDTI ATGAA 2 cut(s) 100, 128
XapI RAATTY 1 cut(s) 346
XbaI TCTAGA 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XspI CTAG 2 cut(s) 224, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.