Rorug05G0193600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018401
Physical Location & Seq
Forward (+)
19040689 .. 19041852
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0193600.1

Sequence Viewer

Length: 867 bp
ATGTCATCGTCTCAGTTCTCCATGCCCAAGCTTCTCAAGGCCACCCAAAACTTCTCGCCAGACATGATCATCGGCCATGGGGACTCCTTCCTGCTTTACAAGGCTCATCTCTCCAACGGTCTCACCGTCGCCGTCAAGAAGCTTGATCCCAGAGAGTTCCCAGGGTTTAGGGAATTCCGAGCTGAAGCCCAAACACTTGGAAAGCTTCTACACCCAAATATCAACAAGCTCTTGGGATACAGCTCTGATGGACATTTCGTGTACGAGTACATTGAGAGAGGTGATCTTCAGTGCTTGCTACATGACTCCGATAACCCGTTACCATGGTCAACCAGGTTAGGGATTGTTAGAGGTGTGGCTAATGGGCTCGCATATTTGCATGGCTTGAAAAGCCCTATTGTTCATAGGGACATCAGAGCCAAAAATGTGTTACTTGACTTGGAGTATGAGCCACATATTACTAGCTTTGGGCTCGCTCGACAGATCGAATCATCGCATGTCTCAACTATTGATGATGGCGCCATGGGGTACATGCCACCGGAGTACCTAGCGGGGAACAATGTGGCTACCTTGAGAGGAGATGTGTTTAGTTTTGGGATTCTGATGCTGGAAATCGCAACTGCGAAATGGCCCAACCTGCCGATCATGTTTGATGACAAGAAAATGAGGATTGTGGAATGGGCCAGGAAAATGGTCATGGGTGATCGGCAGATAGAAATGATGGATTCTTGTATTCCGATGCAGGATTTGGATGAAGACATAGTTAAGAAGTATTTTTCCATTGCTTGTTCGTGTTCTCATGAGATTGCAAGAGAGAGACCTCCTATGATCGAGGTCGTCAAGCTTTTAAATGAGCTTTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.55

Weight (kDa)

6.06

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 21 - 213 1.4e-29 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 25 - 244 1.1e-34 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018401)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23561
pyrus_communis pycom11g18480
rosa_laevigata RLG00000034079
rosa_roxburghii Rroxscaffold_1G00038950
rosa_rugosa Rorug05G0193600
rosa_samantha Rh5AG279300 Rh5BG283700 Rh5BG284600 Rh5CG316500 Rh5DG293400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 645
AccB1I GGYRCC 1 cut(s) 518
AciI CCGC 1 cut(s) 551
AclWI GGATC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 2 cut(s) 204, 272
AcyI GRCGYC 1 cut(s) 519
AfaI GTAC 4 cut(s) 263, 269, 530, 545
AfiI CCNNNNNNNGG 1 cut(s) 339
AgsI TTSAA 2 cut(s) 388, 861
AjnI CCWGG 3 cut(s) 160, 332, 683
AluBI AGCT 9 cut(s) 31, 142, 182, 205, 229, 243, 465, 844, 856
AluI AGCT 9 cut(s) 31, 142, 182, 205, 229, 243, 465, 844, 856
Alw26I GTCTC 4 cut(s) 15, 125, 505, 811
AlwI GGATC 1 cut(s) 140
AoxI GGCC 4 cut(s) 39, 73, 629, 681
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 2 cut(s) 630, 681
AsuHPI GGTGA 3 cut(s) 115, 293, 713
BaeI ACNNNNGTAYC 2 cut(s) 527, 560
BanI GGYRCC 1 cut(s) 518
BanII GRGCYC 2 cut(s) 369, 474
BbsI GAAGAC 1 cut(s) 762
BccI CCATC 3 cut(s) 242, 509, 715
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 3 cut(s) 162, 334, 685
BciVI GTATCC 1 cut(s) 230
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 4 cut(s) 15, 125, 505, 811
BfaI CTAG 2 cut(s) 462, 548
BfoI RGCGCY 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 645
BfuI GTATCC 1 cut(s) 230
Bme1390I CCNGG 3 cut(s) 162, 334, 685
BmgT120I GGNCC 2 cut(s) 630, 681
BmiI GGNNCC 1 cut(s) 520
BmrFI CCNGG 3 cut(s) 162, 334, 685
BmsI GCATC 2 cut(s) 594, 729
BpiI GAAGAC 1 cut(s) 762
BpuEI CTTGAG 2 cut(s) 20, 592
BsaHI GRCGYC 1 cut(s) 519
BsaI GGTCTC 2 cut(s) 125, 811
BsaJI CCNNGG 5 cut(s) 76, 160, 161, 323, 522
BsaWI WCCGGW 1 cut(s) 538
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 780
BseBI CCWGG 3 cut(s) 162, 334, 685
BseDI CCNNGG 5 cut(s) 76, 160, 161, 323, 522
BseGI GGATG 1 cut(s) 757
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 591
BshFI GGCC 4 cut(s) 41, 75, 631, 683
BshNI GGYRCC 1 cut(s) 518
BsiSI CCGG 1 cut(s) 539
BslFI GGGAC 2 cut(s) 95, 422
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 4 cut(s) 15, 125, 505, 811
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 95, 422
BsnI GGCC 4 cut(s) 41, 75, 631, 683
Bso31I GGTCTC 2 cut(s) 125, 811
Bsp1286I GDGCHC 2 cut(s) 369, 474
Bsp143I GATC 7 cut(s) 66, 145, 283, 483, 642, 703, 828
Bsp19I CCATGG 3 cut(s) 76, 323, 522
BspACI CCGC 1 cut(s) 551
BspANI GGCC 4 cut(s) 41, 75, 631, 683
BspCNI CTCAG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 1 cut(s) 520
BspMI ACCTGC 1 cut(s) 645
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 518
BspTNI GGTCTC 2 cut(s) 125, 811
BsrDI GCAATG 1 cut(s) 780
BssECI CCNNGG 5 cut(s) 76, 160, 161, 323, 522
BssMI GATC 7 cut(s) 66, 145, 283, 483, 642, 703, 828
BssNI GRCGYC 1 cut(s) 519
BssT1I CCWWGG 3 cut(s) 76, 323, 522
Bst2UI CCWGG 3 cut(s) 162, 334, 685
Bst4CI ACNGT 2 cut(s) 119, 127
BstACI GRCGYC 1 cut(s) 519
BstC8I GCNNGC 3 cut(s) 296, 369, 474
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 3 cut(s) 76, 323, 522
BstF5I GGATG 1 cut(s) 757
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 7 cut(s) 69, 148, 286, 486, 645, 706, 831
BstMAI GTCTC 4 cut(s) 15, 125, 505, 811
BstMBI GATC 7 cut(s) 66, 145, 283, 483, 642, 703, 828
BstMWI GCNNNNNNNGC 2 cut(s) 390, 637
BstNI CCWGG 3 cut(s) 162, 334, 685
BstNSI RCATGY 2 cut(s) 500, 535
BstSCI CCNGG 3 cut(s) 160, 332, 683
BstV2I GAAGAC 1 cut(s) 762
BstXI CCANNNNNNTGG 2 cut(s) 197, 691
BsuI GTATCC 1 cut(s) 230
BsuRI GGCC 4 cut(s) 41, 75, 631, 683
BtgI CCRYGG 3 cut(s) 76, 323, 522
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 757
BtsIMutI CAGTG 1 cut(s) 296
BveI ACCTGC 1 cut(s) 645
Cac8I GCNNGC 3 cut(s) 296, 369, 474
CciI TCATGA 1 cut(s) 799
CfoI GCGC 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 630, 681
CsiI ACCWGGT 1 cut(s) 332
Csp6I GTAC 4 cut(s) 262, 268, 529, 544
CviQI GTAC 4 cut(s) 262, 268, 529, 544
DdeI CTNAG 1 cut(s) 12
DinI GGCGCC 1 cut(s) 520
DpnI GATC 7 cut(s) 68, 147, 285, 485, 644, 705, 830
DpnII GATC 7 cut(s) 66, 145, 283, 483, 642, 703, 828
DraI TTTAAA 1 cut(s) 849
EaeI YGGCCR 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 76, 323, 522
Eco24I GRGCYC 2 cut(s) 369, 474
Eco31I GGTCTC 2 cut(s) 125, 811
Eco57I CTGAAG 2 cut(s) 204, 272
EcoRI GAATTC 1 cut(s) 173
EcoRII CCWGG 3 cut(s) 160, 332, 683
EcoT14I CCWWGG 3 cut(s) 76, 323, 522
EcoT38I GRGCYC 2 cut(s) 369, 474
EgeI GGCGCC 1 cut(s) 520
EheI GGCGCC 1 cut(s) 520
ErhI CCWWGG 3 cut(s) 76, 323, 522
Esp3I CGTCTC 1 cut(s) 15
FaqI GGGAC 2 cut(s) 95, 422
FauI CCCGC 1 cut(s) 544
FbaI TGATCA 1 cut(s) 66
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 2 cut(s) 369, 474
FspBI CTAG 2 cut(s) 462, 548
GlaI GCGC 1 cut(s) 520
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 4 cut(s) 41, 75, 631, 683
HapII CCGG 1 cut(s) 539
HhaI GCGC 1 cut(s) 521
Hin1I GRCGYC 1 cut(s) 519
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HindIII AAGCTT 4 cut(s) 29, 140, 203, 842
HinfI GANTC 5 cut(s) 83, 305, 488, 598, 725
HpaII CCGG 1 cut(s) 539
HphI GGTGA 3 cut(s) 115, 293, 713
Hpy166II GTNNAC 2 cut(s) 262, 330
Hpy188I TCNGA 6 cut(s) 179, 247, 310, 416, 603, 738
Hpy188III TCNNGA 2 cut(s) 136, 800
Hpy8I GTNNAC 2 cut(s) 262, 330
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 119, 127
HpyCH4V TGCA 3 cut(s) 379, 742, 809
HpyF10VI GCNNNNNNNGC 2 cut(s) 390, 637
HpyF3I CTNAG 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 519
HspAI GCGC 1 cut(s) 519
KasI GGCGCC 1 cut(s) 518
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 7 cut(s) 66, 145, 283, 483, 642, 703, 828
LweI GCATC 2 cut(s) 594, 729
MabI ACCWGGT 1 cut(s) 332
MaeI CTAG 2 cut(s) 462, 548
MaeIII GTNAC 2 cut(s) 318, 429
MalI GATC 7 cut(s) 68, 147, 285, 485, 644, 705, 830
MboI GATC 7 cut(s) 66, 145, 283, 483, 642, 703, 828
MboII GAAGA 2 cut(s) 278, 767
MhlI GDGCHC 2 cut(s) 369, 474
MluCI AATT 1 cut(s) 173
Mly113I GGCGCC 1 cut(s) 519
MlyI GAGTC 2 cut(s) 77, 299
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 6 cut(s) 272, 344, 569, 660, 826, 831
MseI TTAA 2 cut(s) 765, 848
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 3 cut(s) 162, 334, 685
MvaI CCWGG 3 cut(s) 162, 334, 685
MwoI GCNNNNNNNGC 2 cut(s) 390, 637
NarI GGCGCC 1 cut(s) 519
NcoI CCATGG 3 cut(s) 76, 323, 522
NdeII GATC 7 cut(s) 66, 145, 283, 483, 642, 703, 828
NlaIV GGNNCC 1 cut(s) 520
NspI RCATGY 2 cut(s) 500, 535
PagI TCATGA 1 cut(s) 799
PasI CCCWGGG 1 cut(s) 161
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 3 cut(s) 488, 598, 725
PleI GAGTC 2 cut(s) 77, 299
PluTI GGCGCC 1 cut(s) 522
PpsI GAGTC 2 cut(s) 77, 299
Psp6I CCWGG 3 cut(s) 160, 332, 683
PspGI CCWGG 3 cut(s) 160, 332, 683
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 2 cut(s) 630, 681
RsaI GTAC 4 cut(s) 263, 269, 530, 545
RsaNI GTAC 4 cut(s) 262, 268, 529, 544
SaqAI TTAA 2 cut(s) 765, 848
Sau3AI GATC 7 cut(s) 66, 145, 283, 483, 642, 703, 828
Sau96I GGNCC 2 cut(s) 630, 681
SchI GAGTC 2 cut(s) 77, 299
ScrFI CCNGG 3 cut(s) 162, 334, 685
SduI GDGCHC 2 cut(s) 369, 474
SexAI ACCWGGT 1 cut(s) 332
SfaNI GCATC 2 cut(s) 594, 729
SfoI GGCGCC 1 cut(s) 520
SmlI CTYRAG 2 cut(s) 35, 571
SmoI CTYRAG 2 cut(s) 35, 571
Sse9I AATT 1 cut(s) 173
SsiI CCGC 1 cut(s) 551
SspDI GGCGCC 1 cut(s) 518
SspMI CTAG 2 cut(s) 462, 548
StyD4I CCNGG 3 cut(s) 160, 332, 683
StyI CCWWGG 3 cut(s) 76, 323, 522
TaaI ACNGT 2 cut(s) 119, 127
TaqI TCGA 3 cut(s) 478, 486, 831
TasI AATT 1 cut(s) 173
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 3 cut(s) 488, 598, 725
Tru1I TTAA 2 cut(s) 765, 848
Tru9I TTAA 2 cut(s) 765, 848
TscAI CASTG 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 392, 768
TspRI CASTG 1 cut(s) 296
XapI RAATTY 1 cut(s) 173
XceI RCATGY 2 cut(s) 500, 535
XspI CTAG 2 cut(s) 462, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.