DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g23871 |
| rosa_chinensis | RchiOBHm_Chr5g0042221 |
| rosa_laevigata | RLG00000034113 |
| rosa_multiflora | Rmu_sc0000698.1_g000044 Rmu_sc0001715.1_g000029 Rmu_sc0034428.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00038410 |
| rosa_samantha | Rh5AG284000 Rh5AG285000 Rh5BG289400 Rh5CG320800 Rh5CG321600 Rh5DG298700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 311 |
| AccI | GTMKAC | 1 cut(s) | 139 |
| AciI | CCGC | 3 cut(s) | 15, 50, 133 |
| AcyI | GRCGYC | 1 cut(s) | 136 |
| AfaI | GTAC | 2 cut(s) | 57, 113 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 71, 291, 311 |
| AgsI | TTSAA | 1 cut(s) | 328 |
| AjnI | CCWGG | 2 cut(s) | 357, 398 |
| AluBI | AGCT | 1 cut(s) | 84 |
| AluI | AGCT | 1 cut(s) | 84 |
| Alw26I | GTCTC | 3 cut(s) | 69, 389, 389 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 405 |
| AoxI | GGCC | 3 cut(s) | 124, 192, 342 |
| ApeKI | GCWGC | 1 cut(s) | 215 |
| AspS9I | GGNCC | 3 cut(s) | 192, 281, 342 |
| AsuC2I | CCSGG | 1 cut(s) | 293 |
| AsuHPI | GGTGA | 1 cut(s) | 192 |
| AvaII | GGWCC | 1 cut(s) | 281 |
| BbvI | GCAGC | 1 cut(s) | 227 |
| BccI | CCATC | 2 cut(s) | 141, 305 |
| BciT130I | CCWGG | 2 cut(s) | 359, 400 |
| BcnI | CCSGG | 1 cut(s) | 293 |
| BcoDI | GTCTC | 3 cut(s) | 69, 389, 389 |
| BisI | GCNGC | 3 cut(s) | 15, 134, 216 |
| BlsI | GCNGC | 3 cut(s) | 16, 135, 217 |
| Bme1390I | CCNGG | 3 cut(s) | 293, 359, 400 |
| Bme18I | GGWCC | 1 cut(s) | 281 |
| BmgT120I | GGNCC | 3 cut(s) | 192, 281, 342 |
| BmiI | GGNNCC | 3 cut(s) | 282, 283, 343 |
| BmrFI | CCNGG | 3 cut(s) | 293, 359, 400 |
| BmrI | ACTGGG | 1 cut(s) | 199 |
| BmuI | ACTGGG | 1 cut(s) | 199 |
| BpuEI | CTTGAG | 1 cut(s) | 100 |
| BpuMI | CCSGG | 1 cut(s) | 293 |
| BsaHI | GRCGYC | 1 cut(s) | 136 |
| BsaI | GGTCTC | 1 cut(s) | 389 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 121, 151 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 71, 291, 311 |
| Bse1I | ACTGG | 4 cut(s) | 194, 195, 219, 305 |
| BseBI | CCWGG | 2 cut(s) | 359, 400 |
| BseGI | GGATG | 2 cut(s) | 152, 208 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 71, 291, 311 |
| BseNI | ACTGG | 4 cut(s) | 194, 195, 219, 305 |
| BseXI | GCAGC | 1 cut(s) | 227 |
| BseYI | CCCAGC | 1 cut(s) | 106 |
| BshFI | GGCC | 3 cut(s) | 126, 194, 344 |
| BsiSI | CCGG | 3 cut(s) | 127, 212, 292 |
| BslFI | GGGAC | 1 cut(s) | 267 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 71, 291, 311 |
| BsmAI | GTCTC | 3 cut(s) | 69, 389, 389 |
| BsmFI | GGGAC | 1 cut(s) | 267 |
| BsnI | GGCC | 3 cut(s) | 126, 194, 344 |
| Bso31I | GGTCTC | 1 cut(s) | 389 |
| Bsp143I | GATC | 1 cut(s) | 265 |
| BspACI | CCGC | 3 cut(s) | 15, 50, 133 |
| BspANI | GGCC | 3 cut(s) | 126, 194, 344 |
| BspLI | GGNNCC | 3 cut(s) | 282, 283, 343 |
| BspTNI | GGTCTC | 1 cut(s) | 389 |
| BsrI | ACTGG | 4 cut(s) | 194, 195, 219, 305 |
| BssMI | GATC | 1 cut(s) | 265 |
| BssNI | GRCGYC | 1 cut(s) | 136 |
| Bst2UI | CCWGG | 2 cut(s) | 359, 400 |
| Bst4CI | ACNGT | 1 cut(s) | 116 |
| Bst6I | CTCTTC | 1 cut(s) | 228 |
| BstACI | GRCGYC | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 1 cut(s) | 104 |
| BstDEI | CTNAG | 1 cut(s) | 170 |
| BstF5I | GGATG | 2 cut(s) | 152, 208 |
| BstKTI | GATC | 1 cut(s) | 268 |
| BstMAI | GTCTC | 3 cut(s) | 69, 389, 389 |
| BstMBI | GATC | 1 cut(s) | 265 |
| BstNI | CCWGG | 2 cut(s) | 359, 400 |
| BstSCI | CCNGG | 3 cut(s) | 291, 357, 398 |
| BstV1I | GCAGC | 1 cut(s) | 227 |
| BsuRI | GGCC | 3 cut(s) | 126, 194, 344 |
| BtsCI | GGATG | 2 cut(s) | 152, 208 |
| BtsIMutI | CAGTG | 3 cut(s) | 36, 187, 226 |
| Cac8I | GCNNGC | 1 cut(s) | 104 |
| CaiI | CAGNNNCTG | 1 cut(s) | 405 |
| Cfr13I | GGNCC | 3 cut(s) | 192, 281, 342 |
| CseI | GACGC | 1 cut(s) | 125 |
| Csp6I | GTAC | 2 cut(s) | 56, 112 |
| CviJI | RGCY | 8 cut(s) | 84, 106, 126, 194, 218, 304, 344, 403 |
| CviKI_1 | RGCY | 8 cut(s) | 84, 106, 126, 194, 218, 304, 344, 403 |
| CviQI | GTAC | 2 cut(s) | 56, 112 |
| DdeI | CTNAG | 1 cut(s) | 170 |
| DpnI | GATC | 1 cut(s) | 267 |
| DpnII | GATC | 1 cut(s) | 265 |
| Eam1104I | CTCTTC | 1 cut(s) | 228 |
| EarI | CTCTTC | 1 cut(s) | 228 |
| Eco31I | GGTCTC | 1 cut(s) | 389 |
| Eco47I | GGWCC | 1 cut(s) | 281 |
| EcoO109I | RGGNCCY | 1 cut(s) | 281 |
| EcoRII | CCWGG | 2 cut(s) | 357, 398 |
| FaiI | YATR | 2 cut(s) | 337, 339 |
| FaqI | GGGAC | 1 cut(s) | 267 |
| FauI | CCCGC | 1 cut(s) | 43 |
| FauNDI | CATATG | 1 cut(s) | 337 |
| FblI | GTMKAC | 1 cut(s) | 139 |
| Fnu4HI | GCNGC | 3 cut(s) | 15, 134, 216 |
| FokI | GGATG | 2 cut(s) | 159, 195 |
| Fsp4HI | GCNGC | 3 cut(s) | 15, 134, 216 |
| GluI | GCNGC | 3 cut(s) | 15, 134, 216 |
| GsaI | CCCAGC | 1 cut(s) | 110 |
| HaeIII | GGCC | 3 cut(s) | 126, 194, 344 |
| HapII | CCGG | 3 cut(s) | 127, 212, 292 |
| HgaI | GACGC | 1 cut(s) | 125 |
| Hin1I | GRCGYC | 1 cut(s) | 136 |
| HincII | GTYRAC | 1 cut(s) | 140 |
| HindII | GTYRAC | 1 cut(s) | 140 |
| HinfI | GANTC | 3 cut(s) | 251, 258, 273 |
| HpaII | CCGG | 3 cut(s) | 127, 212, 292 |
| HphI | GGTGA | 1 cut(s) | 192 |
| Hpy166II | GTNNAC | 2 cut(s) | 140, 200 |
| Hpy188I | TCNGA | 1 cut(s) | 43 |
| Hpy188III | TCNNGA | 2 cut(s) | 182, 255 |
| Hpy8I | GTNNAC | 2 cut(s) | 140, 200 |
| Hpy99I | CGWCG | 2 cut(s) | 102, 141 |
| HpyAV | CCTTC | 1 cut(s) | 75 |
| HpyCH4III | ACNGT | 1 cut(s) | 116 |
| HpyCH4IV | ACGT | 2 cut(s) | 58, 97 |
| HpyF3I | CTNAG | 1 cut(s) | 170 |
| HpySE526I | ACGT | 2 cut(s) | 58, 97 |
| Hsp92I | GRCGYC | 1 cut(s) | 136 |
| KflI | GGGWCCC | 1 cut(s) | 281 |
| Kzo9I | GATC | 1 cut(s) | 265 |
| Lsp1109I | GCAGC | 1 cut(s) | 227 |
| MaeII | ACGT | 2 cut(s) | 58, 97 |
| MalI | GATC | 1 cut(s) | 267 |
| MboI | GATC | 1 cut(s) | 265 |
| MboII | GAAGA | 1 cut(s) | 245 |
| MluCI | AATT | 1 cut(s) | 388 |
| MlyI | GAGTC | 1 cut(s) | 267 |
| MmeI | TCCRAC | 1 cut(s) | 21 |
| MnlI | CCTC | 5 cut(s) | 37, 116, 123, 144, 214 |
| MspI | CCGG | 3 cut(s) | 127, 212, 292 |
| MspR9I | CCNGG | 3 cut(s) | 293, 359, 400 |
| MvaI | CCWGG | 2 cut(s) | 359, 400 |
| NciI | CCSGG | 1 cut(s) | 293 |
| NdeI | CATATG | 1 cut(s) | 337 |
| NdeII | GATC | 1 cut(s) | 265 |
| NlaIV | GGNNCC | 3 cut(s) | 282, 283, 343 |
| PfeI | GAWTC | 2 cut(s) | 251, 273 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 311 |
| PkrI | GCNGC | 3 cut(s) | 16, 135, 217 |
| PleI | GAGTC | 1 cut(s) | 266 |
| PpsI | GAGTC | 1 cut(s) | 266 |
| PpuMI | RGGWCCY | 1 cut(s) | 281 |
| Psp5II | RGGWCCY | 1 cut(s) | 281 |
| Psp6I | CCWGG | 2 cut(s) | 357, 398 |
| PspFI | CCCAGC | 1 cut(s) | 106 |
| PspGI | CCWGG | 2 cut(s) | 357, 398 |
| PspN4I | GGNNCC | 3 cut(s) | 282, 283, 343 |
| PspPI | GGNCC | 3 cut(s) | 192, 281, 342 |
| PspPPI | RGGWCCY | 1 cut(s) | 281 |
| PstNI | CAGNNNCTG | 1 cut(s) | 405 |
| RsaI | GTAC | 2 cut(s) | 57, 113 |
| RsaNI | GTAC | 2 cut(s) | 56, 112 |
| SalI | GTCGAC | 1 cut(s) | 138 |
| SatI | GCNGC | 3 cut(s) | 15, 134, 216 |
| Sau3AI | GATC | 1 cut(s) | 265 |
| Sau96I | GGNCC | 3 cut(s) | 192, 281, 342 |
| SchI | GAGTC | 1 cut(s) | 267 |
| ScrFI | CCNGG | 3 cut(s) | 293, 359, 400 |
| SetI | ASST | 5 cut(s) | 48, 61, 86, 100, 326 |
| SinI | GGWCC | 1 cut(s) | 281 |
| SmlI | CTYRAG | 1 cut(s) | 79 |
| SmoI | CTYRAG | 1 cut(s) | 79 |
| Sse9I | AATT | 1 cut(s) | 388 |
| SsiI | CCGC | 3 cut(s) | 15, 50, 133 |
| StyD4I | CCNGG | 3 cut(s) | 291, 357, 398 |
| TaaI | ACNGT | 1 cut(s) | 116 |
| TaiI | ACGT | 2 cut(s) | 61, 100 |
| TaqI | TCGA | 4 cut(s) | 68, 121, 139, 261 |
| TasI | AATT | 1 cut(s) | 388 |
| TauI | GCSGC | 2 cut(s) | 17, 136 |
| TfiI | GAWTC | 2 cut(s) | 251, 273 |
| TscAI | CASTG | 3 cut(s) | 36, 194, 226 |
| TseI | GCWGC | 1 cut(s) | 215 |
| TspDTI | ATGAA | 1 cut(s) | 15 |
| TspRI | CASTG | 3 cut(s) | 36, 194, 226 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 311 |
| VpaK11BI | GGWCC | 1 cut(s) | 281 |
| XmiI | GTMKAC | 1 cut(s) | 139 |