DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g23871 |
| rosa_chinensis | RchiOBHm_Chr5g0042221 |
| rosa_laevigata | RLG00000034113 |
| rosa_multiflora | Rmu_sc0000698.1_g000044 Rmu_sc0001715.1_g000029 Rmu_sc0034428.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00038410 |
| rosa_samantha | Rh5AG284000 Rh5AG285000 Rh5BG289400 Rh5CG320800 Rh5CG321600 Rh5DG298700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 168 |
| AciI | CCGC | 1 cut(s) | 269 |
| AcuI | CTGAAG | 1 cut(s) | 81 |
| AflIII | ACRYGT | 1 cut(s) | 54 |
| AgsI | TTSAA | 1 cut(s) | 361 |
| AjnI | CCWGG | 2 cut(s) | 390, 431 |
| Alw26I | GTCTC | 3 cut(s) | 50, 422, 422 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 438 |
| AoxI | GGCC | 3 cut(s) | 25, 89, 375 |
| ApaI | GGGCCC | 1 cut(s) | 29 |
| ApeKI | GCWGC | 1 cut(s) | 112 |
| AspLEI | GCGC | 1 cut(s) | 168 |
| AspS9I | GGNCC | 5 cut(s) | 25, 26, 89, 314, 375 |
| AsuC2I | CCSGG | 2 cut(s) | 109, 326 |
| AsuHPI | GGTGA | 3 cut(s) | 89, 97, 167 |
| AvaII | GGWCC | 1 cut(s) | 314 |
| BaeGI | GKGCMC | 1 cut(s) | 29 |
| BanII | GRGCYC | 1 cut(s) | 29 |
| BbsI | GAAGAC | 1 cut(s) | 69 |
| BbvI | GCAGC | 1 cut(s) | 124 |
| BccI | CCATC | 3 cut(s) | 154, 278, 290 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 227, 261 |
| BciT130I | CCWGG | 2 cut(s) | 392, 433 |
| BcnI | CCSGG | 2 cut(s) | 109, 326 |
| BcoDI | GTCTC | 3 cut(s) | 50, 422, 422 |
| BisI | GCNGC | 2 cut(s) | 113, 270 |
| BlsI | GCNGC | 2 cut(s) | 114, 271 |
| Bme1390I | CCNGG | 4 cut(s) | 109, 326, 392, 433 |
| Bme18I | GGWCC | 1 cut(s) | 314 |
| BmgT120I | GGNCC | 5 cut(s) | 25, 26, 89, 314, 375 |
| BmiI | GGNNCC | 3 cut(s) | 27, 315, 376 |
| BmrFI | CCNGG | 4 cut(s) | 109, 326, 392, 433 |
| BmrI | ACTGGG | 1 cut(s) | 96 |
| BmsI | GCATC | 1 cut(s) | 200 |
| BmuI | ACTGGG | 1 cut(s) | 96 |
| BpiI | GAAGAC | 1 cut(s) | 69 |
| BpuEI | CTTGAG | 1 cut(s) | 404 |
| BpuMI | CCSGG | 2 cut(s) | 109, 326 |
| BsaI | GGTCTC | 1 cut(s) | 422 |
| BsaJI | CCNNGG | 1 cut(s) | 184 |
| Bse1I | ACTGG | 3 cut(s) | 91, 92, 116 |
| BseBI | CCWGG | 2 cut(s) | 392, 433 |
| BseDI | CCNNGG | 1 cut(s) | 184 |
| BseNI | ACTGG | 3 cut(s) | 91, 92, 116 |
| BseRI | GAGGAG | 1 cut(s) | 223 |
| BseSI | GKGCMC | 1 cut(s) | 29 |
| BseXI | GCAGC | 1 cut(s) | 124 |
| Bsh1236I | CGCG | 1 cut(s) | 168 |
| BshFI | GGCC | 3 cut(s) | 27, 91, 377 |
| BsiSI | CCGG | 2 cut(s) | 109, 325 |
| BsmAI | GTCTC | 3 cut(s) | 50, 422, 422 |
| BsmBI | CGTCTC | 1 cut(s) | 50 |
| BsnI | GGCC | 3 cut(s) | 27, 91, 377 |
| Bso31I | GGTCTC | 1 cut(s) | 422 |
| Bsp120I | GGGCCC | 1 cut(s) | 25 |
| Bsp1286I | GDGCHC | 1 cut(s) | 29 |
| BspACI | CCGC | 1 cut(s) | 269 |
| BspANI | GGCC | 3 cut(s) | 27, 91, 377 |
| BspFNI | CGCG | 1 cut(s) | 168 |
| BspLI | GGNNCC | 3 cut(s) | 27, 315, 376 |
| BspTNI | GGTCTC | 1 cut(s) | 422 |
| BsrI | ACTGG | 3 cut(s) | 91, 92, 116 |
| BssECI | CCNNGG | 1 cut(s) | 184 |
| Bst2UI | CCWGG | 2 cut(s) | 392, 433 |
| Bst4CI | ACNGT | 3 cut(s) | 173, 292, 387 |
| Bst6I | CTCTTC | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 2 cut(s) | 246, 250 |
| BstDEI | CTNAG | 1 cut(s) | 224 |
| BstDSI | CCRYGG | 1 cut(s) | 184 |
| BstFNI | CGCG | 1 cut(s) | 168 |
| BstHHI | GCGC | 1 cut(s) | 168 |
| BstMAI | GTCTC | 3 cut(s) | 50, 422, 422 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 258 |
| BstNI | CCWGG | 2 cut(s) | 392, 433 |
| BstNSI | RCATGY | 2 cut(s) | 58, 248 |
| BstSCI | CCNGG | 4 cut(s) | 107, 324, 390, 431 |
| BstSLI | GKGCMC | 1 cut(s) | 29 |
| BstUI | CGCG | 1 cut(s) | 168 |
| BstV1I | GCAGC | 1 cut(s) | 124 |
| BstV2I | GAAGAC | 1 cut(s) | 69 |
| BsuRI | GGCC | 3 cut(s) | 27, 91, 377 |
| BtgI | CCRYGG | 1 cut(s) | 184 |
| BtsIMutI | CAGTG | 2 cut(s) | 84, 123 |
| Cac8I | GCNNGC | 2 cut(s) | 246, 250 |
| CaiI | CAGNNNCTG | 1 cut(s) | 438 |
| CfoI | GCGC | 1 cut(s) | 168 |
| Cfr13I | GGNCC | 5 cut(s) | 25, 26, 89, 314, 375 |
| CviAII | CATG | 4 cut(s) | 55, 206, 245, 406 |
| CviJI | RGCY | 7 cut(s) | 27, 91, 115, 182, 272, 377, 436 |
| CviKI_1 | RGCY | 7 cut(s) | 27, 91, 115, 182, 272, 377, 436 |
| DdeI | CTNAG | 1 cut(s) | 224 |
| Eam1104I | CTCTTC | 1 cut(s) | 125 |
| EarI | CTCTTC | 1 cut(s) | 125 |
| Eco24I | GRGCYC | 1 cut(s) | 29 |
| Eco31I | GGTCTC | 1 cut(s) | 422 |
| Eco47I | GGWCC | 1 cut(s) | 314 |
| Eco57I | CTGAAG | 1 cut(s) | 81 |
| EcoRII | CCWGG | 2 cut(s) | 390, 431 |
| EcoT22I | ATGCAT | 1 cut(s) | 246 |
| EcoT38I | GRGCYC | 1 cut(s) | 29 |
| Esp3I | CGTCTC | 1 cut(s) | 50 |
| FaeI | CATG | 4 cut(s) | 58, 209, 248, 409 |
| FatI | CATG | 4 cut(s) | 54, 205, 244, 405 |
| FauNDI | CATATG | 1 cut(s) | 370 |
| Fnu4HI | GCNGC | 2 cut(s) | 113, 270 |
| FriOI | GRGCYC | 1 cut(s) | 29 |
| Fsp4HI | GCNGC | 2 cut(s) | 113, 270 |
| GlaI | GCGC | 1 cut(s) | 167 |
| GluI | GCNGC | 2 cut(s) | 113, 270 |
| HaeIII | GGCC | 3 cut(s) | 27, 91, 377 |
| HapII | CCGG | 2 cut(s) | 109, 325 |
| HhaI | GCGC | 1 cut(s) | 168 |
| Hin1II | CATG | 4 cut(s) | 58, 209, 248, 409 |
| Hin6I | GCGC | 1 cut(s) | 166 |
| HinP1I | GCGC | 1 cut(s) | 166 |
| HinfI | GANTC | 2 cut(s) | 230, 306 |
| HpaII | CCGG | 2 cut(s) | 109, 325 |
| HphI | GGTGA | 3 cut(s) | 89, 97, 167 |
| Hpy166II | GTNNAC | 1 cut(s) | 97 |
| Hpy188I | TCNGA | 2 cut(s) | 61, 238 |
| Hpy188III | TCNNGA | 1 cut(s) | 79 |
| Hpy8I | GTNNAC | 1 cut(s) | 97 |
| HpyCH4III | ACNGT | 3 cut(s) | 173, 292, 387 |
| HpyCH4IV | ACGT | 1 cut(s) | 43 |
| HpyCH4V | TGCA | 2 cut(s) | 244, 261 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 258 |
| HpyF3I | CTNAG | 1 cut(s) | 224 |
| HpySE526I | ACGT | 1 cut(s) | 43 |
| Hsp92II | CATG | 4 cut(s) | 58, 209, 248, 409 |
| HspAI | GCGC | 1 cut(s) | 166 |
| LmnI | GCTCC | 2 cut(s) | 163, 188 |
| Lsp1109I | GCAGC | 1 cut(s) | 124 |
| LweI | GCATC | 1 cut(s) | 200 |
| MaeII | ACGT | 1 cut(s) | 43 |
| MaeIII | GTNAC | 2 cut(s) | 227, 381 |
| MboII | GAAGA | 2 cut(s) | 74, 142 |
| MhlI | GDGCHC | 1 cut(s) | 29 |
| MlyI | GAGTC | 1 cut(s) | 224 |
| MnlI | CCTC | 2 cut(s) | 111, 244 |
| Mph1103I | ATGCAT | 1 cut(s) | 246 |
| MslI | CAYNNNNRTG | 1 cut(s) | 53 |
| MspI | CCGG | 2 cut(s) | 109, 325 |
| MspR9I | CCNGG | 4 cut(s) | 109, 326, 392, 433 |
| MvaI | CCWGG | 2 cut(s) | 392, 433 |
| MvnI | CGCG | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 258 |
| NciI | CCSGG | 2 cut(s) | 109, 326 |
| NdeI | CATATG | 1 cut(s) | 370 |
| NlaIII | CATG | 4 cut(s) | 58, 209, 248, 409 |
| NlaIV | GGNNCC | 3 cut(s) | 27, 315, 376 |
| NmuCI | GTSAC | 1 cut(s) | 227 |
| NsiI | ATGCAT | 1 cut(s) | 246 |
| NspI | RCATGY | 2 cut(s) | 58, 248 |
| PaeI | GCATGC | 1 cut(s) | 248 |
| PciI | ACATGT | 1 cut(s) | 54 |
| PfeI | GAWTC | 1 cut(s) | 306 |
| PflFI | GACNNNGTC | 1 cut(s) | 350 |
| PkrI | GCNGC | 2 cut(s) | 114, 271 |
| PleI | GAGTC | 1 cut(s) | 224 |
| PpsI | GAGTC | 1 cut(s) | 224 |
| PscI | ACATGT | 1 cut(s) | 54 |
| Psp6I | CCWGG | 2 cut(s) | 390, 431 |
| PspGI | CCWGG | 2 cut(s) | 390, 431 |
| PspN4I | GGNNCC | 3 cut(s) | 27, 315, 376 |
| PspOMI | GGGCCC | 1 cut(s) | 25 |
| PspPI | GGNCC | 5 cut(s) | 25, 26, 89, 314, 375 |
| PstNI | CAGNNNCTG | 1 cut(s) | 438 |
| PsyI | GACNNNGTC | 1 cut(s) | 350 |
| RseI | CAYNNNNRTG | 1 cut(s) | 53 |
| SatI | GCNGC | 2 cut(s) | 113, 270 |
| Sau96I | GGNCC | 5 cut(s) | 25, 26, 89, 314, 375 |
| SchI | GAGTC | 1 cut(s) | 224 |
| ScrFI | CCNGG | 4 cut(s) | 109, 326, 392, 433 |
| SduI | GDGCHC | 1 cut(s) | 29 |
| SetI | ASST | 2 cut(s) | 46, 359 |
| SfaNI | GCATC | 1 cut(s) | 200 |
| SinI | GGWCC | 1 cut(s) | 314 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 53 |
| SmlI | CTYRAG | 1 cut(s) | 419 |
| SmoI | CTYRAG | 1 cut(s) | 419 |
| SphI | GCATGC | 1 cut(s) | 248 |
| SsiI | CCGC | 1 cut(s) | 269 |
| StyD4I | CCNGG | 4 cut(s) | 107, 324, 390, 431 |
| TaaI | ACNGT | 3 cut(s) | 173, 292, 387 |
| TaiI | ACGT | 1 cut(s) | 46 |
| TauI | GCSGC | 1 cut(s) | 272 |
| TfiI | GAWTC | 1 cut(s) | 306 |
| TscAI | CASTG | 2 cut(s) | 91, 123 |
| TseFI | GTSAC | 1 cut(s) | 227 |
| TseI | GCWGC | 1 cut(s) | 112 |
| Tsp45I | GTSAC | 1 cut(s) | 227 |
| TspDTI | ATGAA | 1 cut(s) | 222 |
| TspRI | CASTG | 2 cut(s) | 91, 123 |
| Tth111I | GACNNNGTC | 1 cut(s) | 350 |
| VpaK11BI | GGWCC | 1 cut(s) | 314 |
| XceI | RCATGY | 2 cut(s) | 58, 248 |
| Zsp2I | ATGCAT | 1 cut(s) | 246 |