Rmu_sc0000698.1_g000044

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000698.1
OG0017267
Physical Location & Seq
Forward (+)
217250 .. 217561
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000698.1_g000044.1.cds

Sequence Viewer

Length: 312 bp
atgtttggtgagatcgaccactgccttatagcccatggagcatcagcaaacttatatgaacaccctttgactcttagtgactcctcccaaacgcatgcttgccagaaatgcaaaaatgcggctaatgtgatagatggaatagttgatggcagtagaatcaggggtccatattgccgggtctgtaagtgtgttgatgacattgtcaggttgaatgttccatatggggccaagttaggggtcgtcaacgggccgggccaggcccggccaggcccattcatagcgggcttgggccgggccttgctatatttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

103

Amino Acids

10.98

Weight (kDa)

8.26

Isoelectric Point (pI)

14.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 119, 281
AcoI YGGCCR 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 2 cut(s) 255, 265
AoxI GGCC 8 cut(s) 225, 248, 253, 258, 263, 268, 289, 294
AspS9I GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
AsuC2I CCSGG 4 cut(s) 176, 252, 262, 293
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 164
BccI CCATC 2 cut(s) 128, 140
BciT130I CCWGG 2 cut(s) 257, 267
BcnI CCSGG 4 cut(s) 176, 252, 262, 293
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 6 cut(s) 176, 252, 257, 262, 267, 293
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
BmiI GGNNCC 2 cut(s) 165, 226
BmrFI CCNGG 6 cut(s) 176, 252, 257, 262, 267, 293
BmsI GCATC 1 cut(s) 50
BpuMI CCSGG 4 cut(s) 176, 252, 262, 293
BsaJI CCNNGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 257, 267
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 73
BshFI GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
BsiSI CCGG 4 cut(s) 175, 251, 262, 292
BslI CCNNNNNNNGG 1 cut(s) 234
BsnI GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
Bsp143I GATC 1 cut(s) 12
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 2 cut(s) 119, 281
BspANI GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
BspLI GGNNCC 2 cut(s) 165, 226
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 257, 267
BstC8I GCNNGC 3 cut(s) 96, 100, 283
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 34
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 38, 108
BstNI CCWGG 2 cut(s) 257, 267
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 6 cut(s) 174, 250, 255, 260, 265, 291
BsuRI GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
BtgI CCRYGG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 3 cut(s) 96, 100, 283
Cfr13I GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
CviAII CATG 2 cut(s) 35, 95
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 255, 265
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 38, 98
FatI CATG 2 cut(s) 34, 94
FauI CCCGC 1 cut(s) 274
FauNDI CATATG 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 8 cut(s) 227, 250, 255, 260, 265, 270, 291, 296
HapII CCGG 4 cut(s) 175, 251, 262, 292
Hin1II CATG 2 cut(s) 38, 98
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 70, 80, 156
HpaII CCGG 4 cut(s) 175, 251, 262, 292
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4V TGCA 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 108
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 2 cut(s) 38, 98
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 38
LweI GCATC 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 64, 74
MnlI CCTC 1 cut(s) 94
MseI TTAA 1 cut(s) 310
MspI CCGG 4 cut(s) 175, 251, 262, 292
MspR9I CCNGG 6 cut(s) 176, 252, 257, 262, 267, 293
MvaI CCWGG 2 cut(s) 257, 267
MwoI GCNNNNNNNGC 2 cut(s) 38, 108
NciI CCSGG 4 cut(s) 176, 252, 262, 293
NcoI CCATGG 1 cut(s) 34
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 12
NlaIII CATG 2 cut(s) 38, 98
NlaIV GGNNCC 2 cut(s) 165, 226
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 64, 74
PpsI GAGTC 2 cut(s) 64, 74
Psp6I CCWGG 2 cut(s) 255, 265
PspGI CCWGG 2 cut(s) 255, 265
PspN4I GGNNCC 2 cut(s) 165, 226
PspPI GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
PsyI GACNNNGTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 8 cut(s) 164, 225, 248, 253, 259, 269, 289, 294
SchI GAGTC 2 cut(s) 64, 74
ScrFI CCNGG 6 cut(s) 176, 252, 257, 262, 267, 293
SetI ASST 1 cut(s) 209
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 1 cut(s) 164
SphI GCATGC 1 cut(s) 98
SsiI CCGC 2 cut(s) 119, 281
StyD4I CCNGG 6 cut(s) 174, 250, 255, 260, 265, 291
StyI CCWWGG 1 cut(s) 34
TaqI TCGA 1 cut(s) 15
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 72, 265
TspRI CASTG 1 cut(s) 26
Tth111I GACNNNGTC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 164
XceI RCATGY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.