Rh5CG321600

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017267
Physical Location & Seq
Reverse (-)
35582661 .. 35586098
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG321600.1

Sequence Viewer

Length: 1731 bp
ATGGAGGAGCTGGTAGATGATACTTCAACATCACTTCATGGGAAGAATAAAGTTTTTCTCAGTGGGGATTGGGTTGGCGTTTGTGAAGATTCCCATGATTTTGTCACGAAACTAAGGACATTGAGACGCAGGAAAAAGTTGCTACATCAGGTGGAAATCAAAAGAGATGAGCAGCTCCTGGAAGTACGCATATATTCTGATGCTGGAAGGATTCTACGTCCTTTCCTGGTAGTTAATAATTTGAATAAGATTAAAGAATCAAAAGGGAAAAAACACACGTTCCAGGATCTTCTTGGCAATGGAATAGTCGAGCTCATTGGAGCTGAAAAGAAGAGGATTGCTGTACAGCATGGGACGTCAAGCATCTATTTATGGAGGGGGAAGTCAGCAGTCAAGTACACACACTGTGAACTGGACCTATCATTTTTGTTAGGCTTAAGTTGTGGTATCATTCCGTTTTCAAACCATGATAATGCAAGGAGGGTTCTATACCAGTCTCAGAAGCACTCTCAGCAGGCCATTGGTTTTTCTGCCATGAATCCTAACCACAGAGTGGATACTCTGTCTCACCAACTACACTACCCTCAGAGGCCGCTTTTTCGTACTATGATATCTGATTGCCTTGGCCAACCAGGAAACCCAGTGAGCCATAAGAGAGTTATGCCCAAGCCTGAATACTTTAATGGCCAAAATGCAATTGTTGGGGTCAATGTGCACCTAGGATATAACCAAGAAGATTCTATTGTGATGAACCGCGCATCTGTGCAACGTGGTATGTTCAAATCTGAGCACATACGGAGCTACAAGGCTGAAGTTGAAAACAAGTTCTCATTGGGAAAAAGGAGGAAGCCAGATGACGGTATAAATTTTGGCAAAATACAGAGTAAATTTGGAAGTGTTGACAGCCTTGATGATGATGGATTCCCCTGTATAGGTGCATATCTGCAGAGTGGTGATACTATTATTGGGAGGTGCAGTGAATCTGGTACTGATCATAGCATCAAACTGAGGCATACTGAAAGAGGAAAGGTTCAGAAGGTTGTACTTTCCTCTAATGAAGAGGGAAAGAATTTTGGTGTTGTATCCTTAAGACAGGTTCGTTCTCCTTGTCTTGGAGACAAGTTCTCAAGCATGCATGGGCAGAAGGGTGTCCTAGGCTTTTTGGGGTCTGAAGAGAACTTCCCCTTCACAATACAGGGGATAGTTCCAGATATTGTAATTAATCCACATGCATTTCCTTCACGACAAGCTCCTGGTCAACTCCTAGAGGCTGCTTTAGGGAAGGGGATTGCCTGTGGTGGCTCAATGAGATATGCAACTCCTTTCTCTACTCCCTCTGTTGATGACATCACAGATCAGCTTCATAGGAACACTGGGCCAGTTCACCCTCTCACCCGGCAGCCAGTGGCAGACAGGAAGAGATTTGGTGGGGTAAAGTTTGGTGAGATGGAGCGCGACTGCCTTATAGCCCATGGAGCATCAGCAAACTTACATGAACGCCTTTTCACTCTTAGTGACTCCTCCGAAATGCATGCTTGCCTGAAATGCAAAAATGCGGCTAATGTGATAGATGGAACAGTTGATGGCAGTAGAATCAGGGGTCCATATTGCCGGGTCTGTAAGTCTGTTGATGACATTGTCAGGTTGAATGTTCCATATGGGGCCAAGTTATTGTGCCAGGAACTTTTCTGCATGGGCATAAGTCTCAAGTTTGAGACCAGGCTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

576

Amino Acids

64.14

Weight (kDa)

9.16

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_4 PF04566 18 - 79 3.9e-20 RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_6 PF00562 148 - 457 5.7e-77 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 476 - 572 6.2e-25 RNA polymerase Rpb2, domain 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 553
AccII CGCG 2 cut(s) 756, 1455
AciI CCGC 3 cut(s) 593, 754, 1556
AclWI GGATC 1 cut(s) 294
AcoI YGGCCR 2 cut(s) 625, 685
AcsI RAATTY 3 cut(s) 865, 887, 1069
AcuI CTGAAG 2 cut(s) 831, 1191
AcyI GRCGYC 1 cut(s) 356
AdeI CACNNNGTG 2 cut(s) 407, 553
AfaI GTAC 6 cut(s) 186, 345, 398, 604, 988, 1044
AfiI CCNNNNNNNGG 4 cut(s) 553, 857, 932, 1112
AflII CTTAAG 2 cut(s) 436, 1087
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 6 cut(s) 27, 244, 462, 781, 818, 1648
AjnI CCWGG 7 cut(s) 177, 225, 282, 631, 1252, 1677, 1718
AluBI AGCT 7 cut(s) 10, 175, 313, 323, 801, 1250, 1360
AluI AGCT 7 cut(s) 10, 175, 313, 323, 801, 1250, 1360
Alw21I GWGCWC 3 cut(s) 315, 717, 792
Alw26I GTCTC 6 cut(s) 118, 501, 570, 1110, 1709, 1709
Alw44I GTGCAC 1 cut(s) 713
AlwI GGATC 1 cut(s) 294
AlwNI CAGNNNCTG 2 cut(s) 178, 1725
AoxI GGCC 6 cut(s) 516, 590, 625, 685, 1376, 1662
ApaLI GTGCAC 1 cut(s) 713
ApeKI GCWGC 3 cut(s) 172, 1271, 1399
ApoI RAATTY 3 cut(s) 865, 887, 1069
AseI ATTAAT 1 cut(s) 1221
AspA2I CCTAGG 2 cut(s) 718, 1153
AspLEI GCGC 2 cut(s) 758, 1455
AspS9I GGNCC 4 cut(s) 415, 1376, 1601, 1662
AsuC2I CCSGG 2 cut(s) 1396, 1613
AsuHPI GGTGA 5 cut(s) 560, 965, 1376, 1384, 1454
AvaII GGWCC 2 cut(s) 415, 1601
AvrII CCTAGG 2 cut(s) 718, 1153
BaeGI GKGCMC 1 cut(s) 717
BalI TGGCCA 2 cut(s) 627, 687
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 3 cut(s) 315, 717, 792
BbvI GCAGC 3 cut(s) 184, 1258, 1411
BccI CCATC 4 cut(s) 911, 1441, 1565, 1577
BcgI CGANNNNNNTGC 2 cut(s) 1514, 1548
BciT130I CCWGG 7 cut(s) 179, 227, 284, 633, 1254, 1679, 1720
BciVI GTATCC 2 cut(s) 550, 1093
BclI TGATCA 1 cut(s) 991
BcnI CCSGG 2 cut(s) 1396, 1613
BcoDI GTCTC 6 cut(s) 118, 501, 570, 1110, 1709, 1709
BfaI CTAG 3 cut(s) 719, 1154, 1265
BfmI CTRYAG 1 cut(s) 944
BfrI CTTAAG 2 cut(s) 436, 1087
BfuI GTATCC 2 cut(s) 550, 1093
BisI GCNGC 5 cut(s) 173, 593, 1272, 1400, 1557
BlnI CCTAGG 2 cut(s) 718, 1153
BlsI GCNGC 5 cut(s) 174, 594, 1273, 1401, 1558
Bme1390I CCNGG 9 cut(s) 179, 227, 284, 633, 1254, 1396, 1613, 1679, 1720
Bme18I GGWCC 2 cut(s) 415, 1601
BmgT120I GGNCC 4 cut(s) 415, 1376, 1601, 1662
BmiI GGNNCC 2 cut(s) 1602, 1663
BmrFI CCNGG 9 cut(s) 179, 227, 284, 633, 1254, 1396, 1613, 1679, 1720
BmrI ACTGGG 2 cut(s) 635, 1383
BmsI GCATC 5 cut(s) 190, 372, 767, 1008, 1487
BmuI ACTGGG 2 cut(s) 635, 1383
BpuEI CTTGAG 2 cut(s) 1111, 1691
BpuMI CCSGG 2 cut(s) 1396, 1613
BsaHI GRCGYC 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 1709
BsaJI CCNNGG 4 cut(s) 622, 718, 1153, 1471
BsaXI ACNNNNNCTCC 2 cut(s) 961, 991
Bsc4I CCNNNNNNNGG 4 cut(s) 553, 857, 932, 1112
Bse1I ACTGG 6 cut(s) 417, 493, 641, 1378, 1379, 1403
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 7 cut(s) 179, 227, 284, 633, 1254, 1679, 1720
BseDI CCNNGG 4 cut(s) 622, 718, 1153, 1471
BseLI CCNNNNNNNGG 4 cut(s) 553, 857, 932, 1112
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 6 cut(s) 73, 512, 524, 599, 777, 998
BseNI ACTGG 6 cut(s) 417, 493, 641, 1378, 1379, 1403
BseRI GAGGAG 2 cut(s) 20, 1510
BseSI GKGCMC 1 cut(s) 717
BseXI GCAGC 3 cut(s) 184, 1258, 1411
BsgI GTGCAG 1 cut(s) 994
Bsh1236I CGCG 2 cut(s) 756, 1455
BshFI GGCC 6 cut(s) 518, 592, 627, 687, 1378, 1664
BsiHKAI GWGCWC 3 cut(s) 315, 717, 792
BsiSI CCGG 2 cut(s) 1396, 1612
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 4 cut(s) 553, 857, 932, 1112
BsmAI GTCTC 6 cut(s) 118, 501, 570, 1110, 1709, 1709
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 6 cut(s) 518, 592, 627, 687, 1378, 1664
Bso31I GGTCTC 1 cut(s) 1709
Bsp1286I GDGCHC 3 cut(s) 315, 717, 792
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 3 cut(s) 286, 991, 1354
Bsp19I CCATGG 1 cut(s) 1471
BspACI CCGC 3 cut(s) 593, 754, 1556
BspANI GGCC 6 cut(s) 518, 592, 627, 687, 1378, 1664
BspCNI CTCAG 6 cut(s) 72, 511, 523, 598, 778, 999
BspFNI CGCG 2 cut(s) 756, 1455
BspLI GGNNCC 2 cut(s) 1602, 1663
BspMAI CTGCAG 1 cut(s) 948
BspPI GGATC 1 cut(s) 294
BspTI CTTAAG 2 cut(s) 436, 1087
BspTNI GGTCTC 1 cut(s) 1709
BsrDI GCAATG 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 6 cut(s) 417, 493, 641, 1378, 1379, 1403
BssECI CCNNGG 4 cut(s) 622, 718, 1153, 1471
BssMI GATC 3 cut(s) 286, 991, 1354
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 4 cut(s) 622, 718, 1153, 1471
Bst2UI CCWGG 7 cut(s) 179, 227, 284, 633, 1254, 1679, 1720
Bst4CI ACNGT 3 cut(s) 407, 860, 1579
Bst6I CTCTTC 4 cut(s) 326, 1053, 1167, 1412
BstACI GRCGYC 1 cut(s) 356
BstAFI CTTAAG 2 cut(s) 436, 1087
BstAUI TGTACA 1 cut(s) 343
BstC8I GCNNGC 4 cut(s) 516, 1133, 1533, 1537
BstDEI CTNAG 8 cut(s) 59, 113, 498, 510, 585, 786, 1007, 1511
BstDSI CCRYGG 1 cut(s) 1471
BstFNI CGCG 2 cut(s) 756, 1455
BstHHI GCGC 2 cut(s) 758, 1455
BstKTI GATC 3 cut(s) 289, 994, 1357
BstMAI GTCTC 6 cut(s) 118, 501, 570, 1110, 1709, 1709
BstMBI GATC 3 cut(s) 286, 991, 1354
BstMWI GCNNNNNNNGC 3 cut(s) 511, 1475, 1545
BstNI CCWGG 7 cut(s) 179, 227, 284, 633, 1254, 1679, 1720
BstNSI RCATGY 3 cut(s) 1135, 1232, 1535
BstSCI CCNGG 9 cut(s) 177, 225, 282, 631, 1252, 1394, 1611, 1677, 1718
BstSFI CTRYAG 1 cut(s) 944
BstSLI GKGCMC 1 cut(s) 717
BstUI CGCG 2 cut(s) 756, 1455
BstV1I GCAGC 3 cut(s) 184, 1258, 1411
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 2 cut(s) 550, 1093
BsuRI GGCC 6 cut(s) 518, 592, 627, 687, 1378, 1664
BtgI CCRYGG 1 cut(s) 1471
BtsI GCAGTG 1 cut(s) 982
BtsIMutI CAGTG 6 cut(s) 67, 403, 648, 982, 1371, 1410
Cac8I GCNNGC 4 cut(s) 516, 1133, 1533, 1537
CaiI CAGNNNCTG 2 cut(s) 178, 1725
CfoI GCGC 2 cut(s) 758, 1455
Cfr13I GGNCC 4 cut(s) 415, 1376, 1601, 1662
CseI GACGC 1 cut(s) 135
Csp6I GTAC 6 cut(s) 185, 344, 397, 603, 987, 1043
CviQI GTAC 6 cut(s) 185, 344, 397, 603, 987, 1043
DdeI CTNAG 8 cut(s) 59, 113, 498, 510, 585, 786, 1007, 1511
DpnI GATC 3 cut(s) 288, 993, 1356
DpnII GATC 3 cut(s) 286, 991, 1354
DraIII CACNNNGTG 2 cut(s) 407, 553
EaeI YGGCCR 2 cut(s) 625, 685
Eam1104I CTCTTC 4 cut(s) 326, 1053, 1167, 1412
EarI CTCTTC 4 cut(s) 326, 1053, 1167, 1412
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 4 cut(s) 622, 718, 1153, 1471
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 1709
Eco32I GATATC 1 cut(s) 612
Eco47I GGWCC 2 cut(s) 415, 1601
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 831, 1191
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 7 cut(s) 177, 225, 282, 631, 1252, 1677, 1718
EcoRV GATATC 1 cut(s) 612
EcoT14I CCWWGG 4 cut(s) 622, 718, 1153, 1471
EcoT22I ATGCAT 3 cut(s) 1137, 1234, 1533
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 4 cut(s) 622, 718, 1153, 1471
Esp3I CGTCTC 1 cut(s) 118
FaqI GGGAC 1 cut(s) 367
FauNDI CATATG 1 cut(s) 1657
FbaI TGATCA 1 cut(s) 991
Fnu4HI GCNGC 5 cut(s) 173, 593, 1272, 1400, 1557
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 5 cut(s) 173, 593, 1272, 1400, 1557
FspBI CTAG 3 cut(s) 719, 1154, 1265
GlaI GCGC 2 cut(s) 757, 1454
GluI GCNGC 5 cut(s) 173, 593, 1272, 1400, 1557
HaeIII GGCC 6 cut(s) 518, 592, 627, 687, 1378, 1664
HapII CCGG 2 cut(s) 1396, 1612
HgaI GACGC 1 cut(s) 135
HhaI GCGC 2 cut(s) 758, 1455
Hin1I GRCGYC 1 cut(s) 356
Hin6I GCGC 2 cut(s) 756, 1453
HinP1I GCGC 2 cut(s) 756, 1453
HincII GTYRAC 2 cut(s) 901, 1259
HindII GTYRAC 2 cut(s) 901, 1259
HinfI GANTC 9 cut(s) 89, 211, 257, 538, 737, 921, 980, 1517, 1593
HpaII CCGG 2 cut(s) 1396, 1612
HphI GGTGA 5 cut(s) 560, 965, 1376, 1384, 1454
Hpy166II GTNNAC 6 cut(s) 399, 410, 715, 901, 1259, 1384
Hpy188I TCNGA 8 cut(s) 199, 501, 588, 616, 787, 1035, 1171, 1525
Hpy188III TCNNGA 3 cut(s) 106, 1208, 1242
Hpy8I GTNNAC 6 cut(s) 399, 410, 715, 901, 1259, 1384
HpyAV CCTTC 6 cut(s) 201, 1030, 1138, 1195, 1248, 1276
HpyCH4III ACNGT 3 cut(s) 407, 860, 1579
HpyCH4IV ACGT 4 cut(s) 217, 278, 356, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 511, 1475, 1545
HpyF3I CTNAG 8 cut(s) 59, 113, 498, 510, 585, 786, 1007, 1511
HpySE526I ACGT 4 cut(s) 217, 278, 356, 769
Hsp92I GRCGYC 1 cut(s) 356
HspAI GCGC 2 cut(s) 756, 1453
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 3 cut(s) 286, 991, 1354
LmnI GCTCC 7 cut(s) 7, 180, 320, 798, 1255, 1450, 1475
Lsp1109I GCAGC 3 cut(s) 184, 1258, 1411
LweI GCATC 5 cut(s) 190, 372, 767, 1008, 1487
MaeI CTAG 3 cut(s) 719, 1154, 1265
MaeII ACGT 4 cut(s) 217, 278, 356, 769
MaeIII GTNAC 2 cut(s) 103, 1514
MalI GATC 3 cut(s) 288, 993, 1356
MboI GATC 3 cut(s) 286, 991, 1354
MboII GAAGA 8 cut(s) 55, 98, 281, 343, 746, 1070, 1184, 1429
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 3 cut(s) 315, 717, 792
MlsI TGGCCA 2 cut(s) 627, 687
MluCI AATT 6 cut(s) 238, 696, 865, 887, 1069, 1218
MluNI TGGCCA 2 cut(s) 627, 687
MlyI GAGTC 1 cut(s) 1511
Mox20I TGGCCA 2 cut(s) 627, 687
Mph1103I ATGCAT 3 cut(s) 1137, 1234, 1533
MscI TGGCCA 2 cut(s) 627, 687
MseI TTAA 6 cut(s) 234, 252, 437, 681, 1088, 1221
MslI CAYNNNNRTG 1 cut(s) 471
Msp20I TGGCCA 2 cut(s) 627, 687
MspCI CTTAAG 2 cut(s) 436, 1087
MspI CCGG 2 cut(s) 1396, 1612
MspR9I CCNGG 9 cut(s) 179, 227, 284, 633, 1254, 1396, 1613, 1679, 1720
MunI CAATTG 1 cut(s) 696
MvaI CCWGG 7 cut(s) 179, 227, 284, 633, 1254, 1679, 1720
MvnI CGCG 2 cut(s) 756, 1455
MwoI GCNNNNNNNGC 3 cut(s) 511, 1475, 1545
NciI CCSGG 2 cut(s) 1396, 1613
NcoI CCATGG 1 cut(s) 1471
NdeI CATATG 1 cut(s) 1657
NdeII GATC 3 cut(s) 286, 991, 1354
NlaIV GGNNCC 2 cut(s) 1602, 1663
NmuCI GTSAC 2 cut(s) 103, 1514
NsiI ATGCAT 3 cut(s) 1137, 1234, 1533
NspI RCATGY 3 cut(s) 1135, 1232, 1535
PaeI GCATGC 2 cut(s) 1135, 1535
PfeI GAWTC 8 cut(s) 89, 211, 257, 538, 737, 921, 980, 1593
PflFI GACNNNGTC 1 cut(s) 1637
PflMI CCANNNNNTGG 1 cut(s) 553
PfoI TCCNGGA 2 cut(s) 177, 282
PkrI GCNGC 5 cut(s) 174, 594, 1273, 1401, 1558
PleI GAGTC 1 cut(s) 1511
PpsI GAGTC 1 cut(s) 1511
PshBI ATTAAT 1 cut(s) 1221
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 7 cut(s) 177, 225, 282, 631, 1252, 1677, 1718
PspGI CCWGG 7 cut(s) 177, 225, 282, 631, 1252, 1677, 1718
PspN4I GGNNCC 2 cut(s) 1602, 1663
PspPI GGNCC 4 cut(s) 415, 1376, 1601, 1662
PstI CTGCAG 1 cut(s) 948
PstNI CAGNNNCTG 2 cut(s) 178, 1725
PsuI RGATCY 1 cut(s) 286
PsyI GACNNNGTC 1 cut(s) 1637
RsaI GTAC 6 cut(s) 186, 345, 398, 604, 988, 1044
RsaNI GTAC 6 cut(s) 185, 344, 397, 603, 987, 1043
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 6 cut(s) 234, 252, 437, 681, 1088, 1221
SatI GCNGC 5 cut(s) 173, 593, 1272, 1400, 1557
Sau3AI GATC 3 cut(s) 286, 991, 1354
Sau96I GGNCC 4 cut(s) 415, 1376, 1601, 1662
SchI GAGTC 1 cut(s) 1511
ScrFI CCNGG 9 cut(s) 179, 227, 284, 633, 1254, 1396, 1613, 1679, 1720
SduI GDGCHC 3 cut(s) 315, 717, 792
SfaNI GCATC 5 cut(s) 190, 372, 767, 1008, 1487
SfcI CTRYAG 1 cut(s) 944
SinI GGWCC 2 cut(s) 415, 1601
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 4 cut(s) 436, 1087, 1126, 1706
SmoI CTYRAG 4 cut(s) 436, 1087, 1126, 1706
SphI GCATGC 2 cut(s) 1135, 1535
Sse9I AATT 6 cut(s) 238, 696, 865, 887, 1069, 1218
SsiI CCGC 3 cut(s) 593, 754, 1556
SspMI CTAG 3 cut(s) 719, 1154, 1265
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 9 cut(s) 177, 225, 282, 631, 1252, 1394, 1611, 1677, 1718
StyI CCWWGG 4 cut(s) 622, 718, 1153, 1471
TaaI ACNGT 3 cut(s) 407, 860, 1579
TaiI ACGT 4 cut(s) 220, 281, 359, 772
TaqI TCGA 1 cut(s) 309
TasI AATT 6 cut(s) 238, 696, 865, 887, 1069, 1218
TatI WGTACW 3 cut(s) 343, 396, 1042
TauI GCSGC 2 cut(s) 595, 1559
TfiI GAWTC 8 cut(s) 89, 211, 257, 538, 737, 921, 980, 1593
Tru1I TTAA 6 cut(s) 234, 252, 437, 681, 1088, 1221
Tru9I TTAA 6 cut(s) 234, 252, 437, 681, 1088, 1221
TscAI CASTG 6 cut(s) 67, 410, 648, 982, 1378, 1410
TseFI GTSAC 2 cut(s) 103, 1514
TseI GCWGC 3 cut(s) 172, 1271, 1399
Tsp45I GTSAC 2 cut(s) 103, 1514
TspDTI ATGAA 6 cut(s) 26, 551, 764, 1071, 1352, 1509
TspGWI ACGGA 2 cut(s) 444, 811
TspRI CASTG 6 cut(s) 67, 410, 648, 982, 1378, 1410
Tth111I GACNNNGTC 1 cut(s) 1637
Van91I CCANNNNNTGG 1 cut(s) 553
Vha464I CTTAAG 2 cut(s) 436, 1087
VneI GTGCAC 1 cut(s) 713
VpaK11BI GGWCC 2 cut(s) 415, 1601
VspI ATTAAT 1 cut(s) 1221
XapI RAATTY 3 cut(s) 865, 887, 1069
XceI RCATGY 3 cut(s) 1135, 1232, 1535
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XmaJI CCTAGG 2 cut(s) 718, 1153
XspI CTAG 3 cut(s) 719, 1154, 1265
ZraI GACGTC 1 cut(s) 357
Zsp2I ATGCAT 3 cut(s) 1137, 1234, 1533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.