DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g23871 |
| rosa_chinensis | RchiOBHm_Chr5g0042221 |
| rosa_laevigata | RLG00000034113 |
| rosa_multiflora | Rmu_sc0000698.1_g000044 Rmu_sc0001715.1_g000029 Rmu_sc0034428.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00038410 |
| rosa_samantha | Rh5AG284000 Rh5AG285000 Rh5BG289400 Rh5CG320800 Rh5CG321600 Rh5DG298700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 187 |
| AccBSI | CCGCTC | 1 cut(s) | 954 |
| AccI | GTMKAC | 1 cut(s) | 1041 |
| AccII | CGCG | 2 cut(s) | 390, 1230 |
| AciI | CCGC | 6 cut(s) | 227, 338, 388, 952, 1184, 1331 |
| AcoI | YGGCCR | 3 cut(s) | 259, 319, 1151 |
| AcsI | RAATTY | 3 cut(s) | 499, 521, 879 |
| AcuI | CTGAAG | 3 cut(s) | 465, 681, 1143 |
| AdeI | CACNNNGTG | 1 cut(s) | 187 |
| AfaI | GTAC | 2 cut(s) | 77, 238 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 187, 566, 602, 966, 1436 |
| AflIII | ACRYGT | 1 cut(s) | 1116 |
| AgsI | TTSAA | 6 cut(s) | 96, 415, 452, 938, 1019, 1423 |
| AjnI | CCWGG | 6 cut(s) | 59, 265, 601, 742, 1169, 1453 |
| AluBI | AGCT | 4 cut(s) | 9, 435, 850, 1010 |
| AluI | AGCT | 4 cut(s) | 9, 435, 850, 1010 |
| Alw21I | GWGCWC | 2 cut(s) | 351, 426 |
| Alw26I | GTCTC | 5 cut(s) | 135, 204, 600, 1112, 1485 |
| Alw44I | GTGCAC | 1 cut(s) | 347 |
| AoxI | GGCC | 8 cut(s) | 150, 224, 259, 319, 538, 1087, 1151, 1438 |
| ApaI | GGGCCC | 1 cut(s) | 1091 |
| ApaLI | GTGCAC | 1 cut(s) | 347 |
| ApeKI | GCWGC | 3 cut(s) | 6, 761, 1174 |
| ApoI | RAATTY | 3 cut(s) | 499, 521, 879 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 730, 762 |
| AseI | ATTAAT | 1 cut(s) | 711 |
| AspA2I | CCTAGG | 2 cut(s) | 352, 643 |
| AspLEI | GCGC | 2 cut(s) | 392, 1230 |
| AspS9I | GGNCC | 4 cut(s) | 1087, 1088, 1376, 1438 |
| AsuC2I | CCSGG | 1 cut(s) | 1388 |
| AsuHPI | GGTGA | 5 cut(s) | 194, 352, 1151, 1159, 1229 |
| AvaII | GGWCC | 1 cut(s) | 1376 |
| AvrII | CCTAGG | 2 cut(s) | 352, 643 |
| BaeGI | GKGCMC | 2 cut(s) | 351, 1091 |
| BalI | TGGCCA | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 1091 |
| BbsI | GAAGAC | 1 cut(s) | 1131 |
| Bbv12I | GWGCWC | 2 cut(s) | 351, 426 |
| BbvI | GCAGC | 3 cut(s) | 18, 748, 1186 |
| BccI | CCATC | 7 cut(s) | 291, 545, 960, 1017, 1216, 1340, 1352 |
| BceAI | ACGGC | 2 cut(s) | 334, 553 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 36, 1289, 1323 |
| BciT130I | CCWGG | 6 cut(s) | 61, 267, 603, 744, 1171, 1455 |
| BciVI | GTATCC | 1 cut(s) | 184 |
| BclI | TGATCA | 1 cut(s) | 103 |
| BcnI | CCSGG | 1 cut(s) | 1388 |
| BcoDI | GTCTC | 5 cut(s) | 135, 204, 600, 1112, 1485 |
| BfaI | CTAG | 3 cut(s) | 353, 644, 755 |
| BfmI | CTRYAG | 1 cut(s) | 577 |
| BfuI | GTATCC | 1 cut(s) | 184 |
| BisI | GCNGC | 5 cut(s) | 7, 227, 762, 1175, 1332 |
| BlnI | CCTAGG | 2 cut(s) | 352, 643 |
| BlsI | GCNGC | 5 cut(s) | 8, 228, 763, 1176, 1333 |
| Bme1390I | CCNGG | 7 cut(s) | 61, 267, 603, 744, 1171, 1388, 1455 |
| Bme18I | GGWCC | 1 cut(s) | 1376 |
| BmgT120I | GGNCC | 4 cut(s) | 1087, 1088, 1376, 1438 |
| BmiI | GGNNCC | 3 cut(s) | 1089, 1377, 1439 |
| BmrFI | CCNGG | 7 cut(s) | 61, 267, 603, 744, 1171, 1388, 1455 |
| BmrI | ACTGGG | 2 cut(s) | 269, 695 |
| BmsI | GCATC | 3 cut(s) | 24, 401, 1262 |
| BmuI | ACTGGG | 2 cut(s) | 269, 695 |
| BpiI | GAAGAC | 1 cut(s) | 1131 |
| BpmI | CTGGAG | 1 cut(s) | 624 |
| BpuEI | CTTGAG | 3 cut(s) | 86, 601, 1467 |
| BpuMI | CCSGG | 1 cut(s) | 1388 |
| BsaJI | CCNNGG | 4 cut(s) | 256, 352, 643, 1246 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 187, 566, 602, 966, 1436 |
| Bse1I | ACTGG | 6 cut(s) | 127, 275, 690, 1060, 1154, 1178 |
| BseBI | CCWGG | 6 cut(s) | 61, 267, 603, 744, 1171, 1455 |
| BseDI | CCNNGG | 4 cut(s) | 256, 352, 643, 1246 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 187, 566, 602, 966, 1436 |
| BseMII | CTCAG | 4 cut(s) | 146, 158, 233, 411 |
| BseNI | ACTGG | 6 cut(s) | 127, 275, 690, 1060, 1154, 1178 |
| BseRI | GAGGAG | 1 cut(s) | 1285 |
| BseSI | GKGCMC | 2 cut(s) | 351, 1091 |
| BseXI | GCAGC | 3 cut(s) | 18, 748, 1186 |
| Bsh1236I | CGCG | 2 cut(s) | 390, 1230 |
| BshFI | GGCC | 8 cut(s) | 152, 226, 261, 321, 540, 1089, 1153, 1440 |
| BsiHKAI | GWGCWC | 2 cut(s) | 351, 426 |
| BsiSI | CCGG | 1 cut(s) | 1387 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 187, 566, 602, 966, 1436 |
| BsmAI | GTCTC | 5 cut(s) | 135, 204, 600, 1112, 1485 |
| BsmBI | CGTCTC | 1 cut(s) | 1112 |
| BsnI | GGCC | 8 cut(s) | 152, 226, 261, 321, 540, 1089, 1153, 1440 |
| Bsp120I | GGGCCC | 1 cut(s) | 1087 |
| Bsp1286I | GDGCHC | 3 cut(s) | 351, 426, 1091 |
| Bsp143I | GATC | 2 cut(s) | 103, 844 |
| Bsp19I | CCATGG | 1 cut(s) | 1246 |
| BspACI | CCGC | 6 cut(s) | 227, 338, 388, 952, 1184, 1331 |
| BspANI | GGCC | 8 cut(s) | 152, 226, 261, 321, 540, 1089, 1153, 1440 |
| BspCNI | CTCAG | 4 cut(s) | 145, 157, 232, 412 |
| BspFNI | CGCG | 2 cut(s) | 390, 1230 |
| BspLI | GGNNCC | 3 cut(s) | 1089, 1377, 1439 |
| BspMAI | CTGCAG | 1 cut(s) | 581 |
| BsrBI | CCGCTC | 1 cut(s) | 954 |
| BsrI | ACTGG | 6 cut(s) | 127, 275, 690, 1060, 1154, 1178 |
| BssECI | CCNNGG | 4 cut(s) | 256, 352, 643, 1246 |
| BssMI | GATC | 2 cut(s) | 103, 844 |
| BssNAI | GTATAC | 1 cut(s) | 1042 |
| BssT1I | CCWWGG | 4 cut(s) | 256, 352, 643, 1246 |
| Bst1107I | GTATAC | 1 cut(s) | 1042 |
| Bst2UI | CCWGG | 6 cut(s) | 61, 267, 603, 744, 1171, 1455 |
| Bst4CI | ACNGT | 5 cut(s) | 80, 494, 942, 1046, 1354 |
| Bst6I | CTCTTC | 2 cut(s) | 657, 1187 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 335 |
| BstC8I | GCNNGC | 4 cut(s) | 150, 623, 1308, 1312 |
| BstDEI | CTNAG | 6 cut(s) | 132, 144, 219, 420, 962, 1286 |
| BstDSI | CCRYGG | 1 cut(s) | 1246 |
| BstEII | GGTNACC | 1 cut(s) | 889 |
| BstFNI | CGCG | 2 cut(s) | 390, 1230 |
| BstHHI | GCGC | 2 cut(s) | 392, 1230 |
| BstKTI | GATC | 2 cut(s) | 106, 847 |
| BstMAI | GTCTC | 5 cut(s) | 135, 204, 600, 1112, 1485 |
| BstMBI | GATC | 2 cut(s) | 103, 844 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 145, 335, 1250, 1320 |
| BstNI | CCWGG | 6 cut(s) | 61, 267, 603, 744, 1171, 1455 |
| BstNSI | RCATGY | 4 cut(s) | 625, 722, 1120, 1310 |
| BstPI | GGTNACC | 1 cut(s) | 889 |
| BstSCI | CCNGG | 7 cut(s) | 59, 265, 601, 742, 1169, 1386, 1453 |
| BstSFI | CTRYAG | 1 cut(s) | 577 |
| BstSLI | GKGCMC | 2 cut(s) | 351, 1091 |
| BstUI | CGCG | 2 cut(s) | 390, 1230 |
| BstV1I | GCAGC | 3 cut(s) | 18, 748, 1186 |
| BstV2I | GAAGAC | 1 cut(s) | 1131 |
| BstZ17I | GTATAC | 1 cut(s) | 1042 |
| BsuI | GTATCC | 1 cut(s) | 184 |
| BsuRI | GGCC | 8 cut(s) | 152, 226, 261, 321, 540, 1089, 1153, 1440 |
| BtgI | CCRYGG | 1 cut(s) | 1246 |
| BtsIMutI | CAGTG | 3 cut(s) | 282, 1051, 1185 |
| Cac8I | GCNNGC | 4 cut(s) | 150, 623, 1308, 1312 |
| CfoI | GCGC | 2 cut(s) | 392, 1230 |
| Cfr13I | GGNCC | 4 cut(s) | 1087, 1088, 1376, 1438 |
| CseI | GACGC | 1 cut(s) | 40 |
| Csp6I | GTAC | 2 cut(s) | 76, 237 |
| CviQI | GTAC | 2 cut(s) | 76, 237 |
| DdeI | CTNAG | 6 cut(s) | 132, 144, 219, 420, 962, 1286 |
| DpnI | GATC | 2 cut(s) | 105, 846 |
| DpnII | GATC | 2 cut(s) | 103, 844 |
| DraIII | CACNNNGTG | 1 cut(s) | 187 |
| EaeI | YGGCCR | 3 cut(s) | 259, 319, 1151 |
| Eam1104I | CTCTTC | 2 cut(s) | 657, 1187 |
| EarI | CTCTTC | 2 cut(s) | 657, 1187 |
| EciI | GGCGGA | 1 cut(s) | 1199 |
| Eco130I | CCWWGG | 4 cut(s) | 256, 352, 643, 1246 |
| Eco24I | GRGCYC | 1 cut(s) | 1091 |
| Eco32I | GATATC | 1 cut(s) | 246 |
| Eco47I | GGWCC | 1 cut(s) | 1376 |
| Eco57I | CTGAAG | 3 cut(s) | 465, 681, 1143 |
| Eco91I | GGTNACC | 1 cut(s) | 889 |
| EcoO65I | GGTNACC | 1 cut(s) | 889 |
| EcoRII | CCWGG | 6 cut(s) | 59, 265, 601, 742, 1169, 1453 |
| EcoRV | GATATC | 1 cut(s) | 246 |
| EcoT14I | CCWWGG | 4 cut(s) | 256, 352, 643, 1246 |
| EcoT22I | ATGCAT | 3 cut(s) | 25, 724, 1308 |
| EcoT38I | GRGCYC | 1 cut(s) | 1091 |
| ErhI | CCWWGG | 4 cut(s) | 256, 352, 643, 1246 |
| Esp3I | CGTCTC | 1 cut(s) | 1112 |
| FauNDI | CATATG | 1 cut(s) | 1432 |
| FbaI | TGATCA | 1 cut(s) | 103 |
| FblI | GTMKAC | 1 cut(s) | 1041 |
| Fnu4HI | GCNGC | 5 cut(s) | 7, 227, 762, 1175, 1332 |
| FriOI | GRGCYC | 1 cut(s) | 1091 |
| Fsp4HI | GCNGC | 5 cut(s) | 7, 227, 762, 1175, 1332 |
| FspBI | CTAG | 3 cut(s) | 353, 644, 755 |
| GlaI | GCGC | 2 cut(s) | 391, 1229 |
| GluI | GCNGC | 5 cut(s) | 7, 227, 762, 1175, 1332 |
| GsuI | CTGGAG | 1 cut(s) | 624 |
| HaeIII | GGCC | 8 cut(s) | 152, 226, 261, 321, 540, 1089, 1153, 1440 |
| HapII | CCGG | 1 cut(s) | 1387 |
| HgaI | GACGC | 1 cut(s) | 40 |
| HhaI | GCGC | 2 cut(s) | 392, 1230 |
| Hin6I | GCGC | 2 cut(s) | 390, 1228 |
| HinP1I | GCGC | 2 cut(s) | 390, 1228 |
| HincII | GTYRAC | 2 cut(s) | 535, 749 |
| HindII | GTYRAC | 2 cut(s) | 535, 749 |
| HinfI | GANTC | 6 cut(s) | 45, 371, 555, 979, 1292, 1368 |
| HpaII | CCGG | 1 cut(s) | 1387 |
| HphI | GGTGA | 5 cut(s) | 194, 352, 1151, 1159, 1229 |
| Hpy166II | GTNNAC | 6 cut(s) | 349, 535, 749, 945, 1042, 1159 |
| Hpy188III | TCNNGA | 3 cut(s) | 698, 732, 1141 |
| Hpy8I | GTNNAC | 6 cut(s) | 349, 535, 749, 945, 1042, 1159 |
| HpyAV | CCTTC | 4 cut(s) | 35, 628, 738, 766 |
| HpyCH4III | ACNGT | 5 cut(s) | 80, 494, 942, 1046, 1354 |
| HpyCH4IV | ACGT | 2 cut(s) | 403, 1105 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 145, 335, 1250, 1320 |
| HpyF3I | CTNAG | 6 cut(s) | 132, 144, 219, 420, 962, 1286 |
| HpySE526I | ACGT | 2 cut(s) | 403, 1105 |
| HspAI | GCGC | 2 cut(s) | 390, 1228 |
| Ksp22I | TGATCA | 1 cut(s) | 103 |
| Kzo9I | GATC | 2 cut(s) | 103, 844 |
| LmnI | GCTCC | 5 cut(s) | 14, 432, 959, 1225, 1250 |
| Lsp1109I | GCAGC | 3 cut(s) | 18, 748, 1186 |
| LweI | GCATC | 3 cut(s) | 24, 401, 1262 |
| MaeI | CTAG | 3 cut(s) | 353, 644, 755 |
| MaeII | ACGT | 2 cut(s) | 403, 1105 |
| MaeIII | GTNAC | 2 cut(s) | 889, 1289 |
| MalI | GATC | 2 cut(s) | 105, 846 |
| MbiI | CCGCTC | 1 cut(s) | 954 |
| MboI | GATC | 2 cut(s) | 103, 844 |
| MboII | GAAGA | 4 cut(s) | 380, 674, 1136, 1204 |
| MfeI | CAATTG | 1 cut(s) | 330 |
| MhlI | GDGCHC | 3 cut(s) | 351, 426, 1091 |
| MlsI | TGGCCA | 1 cut(s) | 261 |
| MluCI | AATT | 6 cut(s) | 330, 499, 521, 708, 879, 994 |
| MluNI | TGGCCA | 1 cut(s) | 261 |
| MlyI | GAGTC | 1 cut(s) | 1286 |
| Mox20I | TGGCCA | 1 cut(s) | 261 |
| Mph1103I | ATGCAT | 3 cut(s) | 25, 724, 1308 |
| MscI | TGGCCA | 1 cut(s) | 261 |
| MseI | TTAA | 3 cut(s) | 315, 711, 993 |
| MslI | CAYNNNNRTG | 2 cut(s) | 105, 1115 |
| Msp20I | TGGCCA | 1 cut(s) | 261 |
| MspI | CCGG | 1 cut(s) | 1387 |
| MspR9I | CCNGG | 7 cut(s) | 61, 267, 603, 744, 1171, 1388, 1455 |
| MunI | CAATTG | 1 cut(s) | 330 |
| MvaI | CCWGG | 6 cut(s) | 61, 267, 603, 744, 1171, 1455 |
| MvnI | CGCG | 2 cut(s) | 390, 1230 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 145, 335, 1250, 1320 |
| NciI | CCSGG | 1 cut(s) | 1388 |
| NcoI | CCATGG | 1 cut(s) | 1246 |
| NdeI | CATATG | 1 cut(s) | 1432 |
| NdeII | GATC | 2 cut(s) | 103, 844 |
| NlaIV | GGNNCC | 3 cut(s) | 1089, 1377, 1439 |
| NmeAIII | GCCGAG | 1 cut(s) | 1129 |
| NmuCI | GTSAC | 1 cut(s) | 1289 |
| NsiI | ATGCAT | 3 cut(s) | 25, 724, 1308 |
| NspI | RCATGY | 4 cut(s) | 625, 722, 1120, 1310 |
| PaeI | GCATGC | 2 cut(s) | 625, 1310 |
| PciI | ACATGT | 1 cut(s) | 1116 |
| PfeI | GAWTC | 5 cut(s) | 45, 371, 555, 979, 1368 |
| PflFI | GACNNNGTC | 1 cut(s) | 1412 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 187 |
| PfoI | TCCNGGA | 1 cut(s) | 601 |
| PkrI | GCNGC | 5 cut(s) | 8, 228, 763, 1176, 1333 |
| PleI | GAGTC | 1 cut(s) | 1286 |
| PpsI | GAGTC | 1 cut(s) | 1286 |
| PscI | ACATGT | 1 cut(s) | 1116 |
| PshBI | ATTAAT | 1 cut(s) | 711 |
| Psp6I | CCWGG | 6 cut(s) | 59, 265, 601, 742, 1169, 1453 |
| PspEI | GGTNACC | 1 cut(s) | 889 |
| PspGI | CCWGG | 6 cut(s) | 59, 265, 601, 742, 1169, 1453 |
| PspN4I | GGNNCC | 3 cut(s) | 1089, 1377, 1439 |
| PspOMI | GGGCCC | 1 cut(s) | 1087 |
| PspPI | GGNCC | 4 cut(s) | 1087, 1088, 1376, 1438 |
| PstI | CTGCAG | 1 cut(s) | 581 |
| PsyI | GACNNNGTC | 1 cut(s) | 1412 |
| RsaI | GTAC | 2 cut(s) | 77, 238 |
| RsaNI | GTAC | 2 cut(s) | 76, 237 |
| RseI | CAYNNNNRTG | 2 cut(s) | 105, 1115 |
| SaqAI | TTAA | 3 cut(s) | 315, 711, 993 |
| SatI | GCNGC | 5 cut(s) | 7, 227, 762, 1175, 1332 |
| Sau3AI | GATC | 2 cut(s) | 103, 844 |
| Sau96I | GGNCC | 4 cut(s) | 1087, 1088, 1376, 1438 |
| SchI | GAGTC | 1 cut(s) | 1286 |
| ScrFI | CCNGG | 7 cut(s) | 61, 267, 603, 744, 1171, 1388, 1455 |
| SduI | GDGCHC | 3 cut(s) | 351, 426, 1091 |
| SfaNI | GCATC | 3 cut(s) | 24, 401, 1262 |
| SfcI | CTRYAG | 1 cut(s) | 577 |
| SinI | GGWCC | 1 cut(s) | 1376 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 105, 1115 |
| SmlI | CTYRAG | 3 cut(s) | 65, 616, 1482 |
| SmoI | CTYRAG | 3 cut(s) | 65, 616, 1482 |
| SphI | GCATGC | 2 cut(s) | 625, 1310 |
| Sse9I | AATT | 6 cut(s) | 330, 499, 521, 708, 879, 994 |
| SsiI | CCGC | 6 cut(s) | 227, 338, 388, 952, 1184, 1331 |
| SspI | AATATT | 1 cut(s) | 926 |
| SspMI | CTAG | 3 cut(s) | 353, 644, 755 |
| StyD4I | CCNGG | 7 cut(s) | 59, 265, 601, 742, 1169, 1386, 1453 |
| StyI | CCWWGG | 4 cut(s) | 256, 352, 643, 1246 |
| TaaI | ACNGT | 5 cut(s) | 80, 494, 942, 1046, 1354 |
| TaiI | ACGT | 2 cut(s) | 406, 1108 |
| TasI | AATT | 6 cut(s) | 330, 499, 521, 708, 879, 994 |
| TauI | GCSGC | 2 cut(s) | 229, 1334 |
| TfiI | GAWTC | 5 cut(s) | 45, 371, 555, 979, 1368 |
| Tru1I | TTAA | 3 cut(s) | 315, 711, 993 |
| Tru9I | TTAA | 3 cut(s) | 315, 711, 993 |
| TscAI | CASTG | 3 cut(s) | 282, 1051, 1185 |
| TseFI | GTSAC | 1 cut(s) | 1289 |
| TseI | GCWGC | 3 cut(s) | 6, 761, 1174 |
| Tsp45I | GTSAC | 1 cut(s) | 1289 |
| TspDTI | ATGAA | 3 cut(s) | 398, 971, 1284 |
| TspRI | CASTG | 3 cut(s) | 282, 1051, 1185 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1412 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 187 |
| VneI | GTGCAC | 1 cut(s) | 347 |
| VpaK11BI | GGWCC | 1 cut(s) | 1376 |
| VspI | ATTAAT | 1 cut(s) | 711 |
| XapI | RAATTY | 3 cut(s) | 499, 521, 879 |
| XceI | RCATGY | 4 cut(s) | 625, 722, 1120, 1310 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1177 |
| XmaJI | CCTAGG | 2 cut(s) | 352, 643 |
| XmiI | GTMKAC | 1 cut(s) | 1041 |
| XspI | CTAG | 3 cut(s) | 353, 644, 755 |
| Zsp2I | ATGCAT | 3 cut(s) | 25, 724, 1308 |