Tornado 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55540 AT5G55540 |
| fragaria_vesca | FvH4_3g23950 |
| malus_domestica | MD03G1189500.v1.1 |
| prunus_persica | Prupe.4G231800_v2.0.a1 |
| pyrus_communis | pycom03g14240 |
| rosa_chinensis | RchiOBHm_Chr5g0042451 |
| rosa_laevigata | RLG00000034127 |
| rosa_multiflora | Rmu_sc0002779.1_g000005 Rmu_sc0016438.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00038240 |
| rosa_rugosa | Rorug05G0200300 |
| rosa_samantha | Rh5AG286400 Rh5CG323200 |
| rosa_wichuraiana | Rw5G026610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2948 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 914 |
| Acc16I | TGCGCA | 1 cut(s) | 3825 |
| Acc36I | ACCTGC | 2 cut(s) | 1493, 3676 |
| Acc65I | GGTACC | 1 cut(s) | 4068 |
| AccB1I | GGYRCC | 1 cut(s) | 4068 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 955, 2181, 2489, 3347 |
| AccBSI | CCGCTC | 1 cut(s) | 4012 |
| AccI | GTMKAC | 1 cut(s) | 2473 |
| AciI | CCGC | 4 cut(s) | 814, 3229, 3478, 4012 |
| AclWI | GGATC | 6 cut(s) | 2210, 2223, 3128, 3141, 3424, 4103 |
| AcoI | YGGCCR | 5 cut(s) | 2377, 2648, 3005, 3831, 4081 |
| AcsI | RAATTY | 7 cut(s) | 586, 723, 1209, 1688, 1846, 2229, 3632 |
| AcuI | CTGAAG | 5 cut(s) | 395, 581, 1353, 2072, 3410 |
| AfaI | GTAC | 4 cut(s) | 1461, 1823, 3222, 4070 |
| AflII | CTTAAG | 1 cut(s) | 2224 |
| AflIII | ACRYGT | 3 cut(s) | 2712, 3537, 3621 |
| AhlI | ACTAGT | 1 cut(s) | 2525 |
| AjnI | CCWGG | 4 cut(s) | 1980, 2488, 3595, 3828 |
| AleI | CACNNNNGTG | 2 cut(s) | 3701, 3985 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 3255, 3287, 3293, 3325 |
| Alw21I | GWGCWC | 5 cut(s) | 261, 531, 1899, 3772, 4126 |
| Alw26I | GTCTC | 9 cut(s) | 68, 225, 1142, 1237, 1965, 2516, 3183, 3379, 3408 |
| AlwI | GGATC | 6 cut(s) | 2210, 2223, 3128, 3141, 3424, 4103 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1135, 2588, 3388 |
| Ama87I | CYCGRG | 1 cut(s) | 3186 |
| AoxI | GGCC | 7 cut(s) | 831, 2377, 2648, 2772, 3005, 3831, 4081 |
| ApoI | RAATTY | 7 cut(s) | 586, 723, 1209, 1688, 1846, 2229, 3632 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 410, 442, 1387, 1419 |
| AseI | ATTAAT | 1 cut(s) | 2835 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2447, 3375 |
| Asp718I | GGTACC | 1 cut(s) | 4068 |
| AspLEI | GCGC | 3 cut(s) | 767, 3826, 3866 |
| AspS9I | GGNCC | 5 cut(s) | 736, 831, 1567, 1813, 2575 |
| AsuC2I | CCSGG | 2 cut(s) | 1719, 2727 |
| AsuHPI | GGTGA | 6 cut(s) | 2044, 2378, 2974, 3467, 3574, 3803 |
| AvaI | CYCGRG | 1 cut(s) | 3186 |
| AvaII | GGWCC | 4 cut(s) | 736, 1567, 1813, 2575 |
| BaeGI | GKGCMC | 1 cut(s) | 3534 |
| BalI | TGGCCA | 3 cut(s) | 2379, 2650, 4083 |
| BamHI | GGATCC | 2 cut(s) | 2215, 3133 |
| BanI | GGYRCC | 1 cut(s) | 4068 |
| BanII | GRGCYC | 3 cut(s) | 261, 531, 3772 |
| BauI | CACGAG | 1 cut(s) | 1562 |
| BbsI | GAAGAC | 1 cut(s) | 504 |
| Bbv12I | GWGCWC | 5 cut(s) | 261, 531, 1899, 3772, 4126 |
| BceAI | ACGGC | 1 cut(s) | 3020 |
| BciT130I | CCWGG | 4 cut(s) | 1982, 2490, 3597, 3830 |
| BciVI | GTATCC | 1 cut(s) | 1300 |
| BclI | TGATCA | 1 cut(s) | 3579 |
| BcnI | CCSGG | 2 cut(s) | 1719, 2727 |
| BcoDI | GTCTC | 9 cut(s) | 68, 225, 1142, 1237, 1965, 2516, 3183, 3379, 3408 |
| BcuI | ACTAGT | 1 cut(s) | 2525 |
| BfaI | CTAG | 7 cut(s) | 314, 1583, 2393, 2526, 2894, 3570, 3776 |
| BfrI | CTTAAG | 1 cut(s) | 2224 |
| BfuAI | ACCTGC | 2 cut(s) | 1493, 3676 |
| BfuI | GTATCC | 1 cut(s) | 1300 |
| BglII | AGATCT | 3 cut(s) | 25, 1577, 3967 |
| BmcAI | AGTACT | 2 cut(s) | 1823, 3222 |
| Bme1390I | CCNGG | 6 cut(s) | 1719, 1982, 2490, 2727, 3597, 3830 |
| Bme18I | GGWCC | 4 cut(s) | 736, 1567, 1813, 2575 |
| BmeT110I | CYCGRG | 1 cut(s) | 3186 |
| BmgT120I | GGNCC | 5 cut(s) | 736, 831, 1567, 1813, 2575 |
| BmiI | GGNNCC | 6 cut(s) | 511, 2217, 2577, 3135, 3594, 4070 |
| BmrFI | CCNGG | 6 cut(s) | 1719, 1982, 2490, 2727, 3597, 3830 |
| BmrI | ACTGGG | 3 cut(s) | 208, 1586, 2339 |
| BmuI | ACTGGG | 3 cut(s) | 208, 1586, 2339 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1249 |
| BpiI | GAAGAC | 1 cut(s) | 504 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 284, 316, 515, 547 |
| BpmI | CTGGAG | 3 cut(s) | 828, 1802, 2167 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1829, 3712 |
| BpuEI | CTTGAG | 8 cut(s) | 311, 1261, 1424, 2828, 3243, 3743, 3934, 4024 |
| BpuMI | CCSGG | 2 cut(s) | 1719, 2727 |
| Bsa29I | ATCGAT | 2 cut(s) | 1341, 2886 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1341 |
| BsaI | GGTCTC | 2 cut(s) | 68, 3183 |
| BsaJI | CCNNGG | 8 cut(s) | 513, 834, 1325, 1718, 1981, 2211, 2489, 3433 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 950, 980 |
| Bse118I | RCCGGY | 1 cut(s) | 1026 |
| Bse3DI | GCAATG | 5 cut(s) | 645, 1874, 2594, 3062, 3083 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1341 |
| BseBI | CCWGG | 4 cut(s) | 1982, 2490, 3597, 3830 |
| BseCI | ATCGAT | 2 cut(s) | 1341, 2886 |
| BseDI | CCNNGG | 8 cut(s) | 513, 834, 1325, 1718, 1981, 2211, 2489, 3433 |
| BseGI | GGATG | 8 cut(s) | 200, 979, 1139, 1948, 2219, 2499, 2547, 3792 |
| BseJI | GATNNNNATC | 1 cut(s) | 1341 |
| BseMI | GCAATG | 5 cut(s) | 645, 1874, 2594, 3062, 3083 |
| BseMII | CTCAG | 6 cut(s) | 710, 1843, 2430, 3156, 3459, 4132 |
| BseRI | GAGGAG | 3 cut(s) | 539, 2404, 3452 |
| BseSI | GKGCMC | 1 cut(s) | 3534 |
| BseYI | CCCAGC | 1 cut(s) | 3782 |
| BsgI | GTGCAG | 1 cut(s) | 3209 |
| BshFI | GGCC | 7 cut(s) | 833, 2379, 2650, 2774, 3007, 3833, 4083 |
| BshNI | GGYRCC | 1 cut(s) | 4068 |
| BshVI | ATCGAT | 2 cut(s) | 1341, 2886 |
| BsiHKAI | GWGCWC | 5 cut(s) | 261, 531, 1899, 3772, 4126 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3186 |
| BsiSI | CCGG | 3 cut(s) | 1027, 1718, 2726 |
| BslFI | GGGAC | 3 cut(s) | 1125, 2081, 3889 |
| BsmAI | GTCTC | 9 cut(s) | 68, 225, 1142, 1237, 1965, 2516, 3183, 3379, 3408 |
| BsmFI | GGGAC | 3 cut(s) | 1125, 2081, 3889 |
| BsmI | GAATGC | 4 cut(s) | 353, 1237, 2672, 3610 |
| BsnI | GGCC | 7 cut(s) | 833, 2379, 2650, 2774, 3007, 3833, 4083 |
| Bso31I | GGTCTC | 2 cut(s) | 68, 3183 |
| BsoBI | CYCGRG | 1 cut(s) | 3186 |
| Bsp1286I | GDGCHC | 6 cut(s) | 261, 531, 1899, 3534, 3772, 4126 |
| BspACI | CCGC | 4 cut(s) | 814, 3229, 3478, 4012 |
| BspANI | GGCC | 7 cut(s) | 833, 2379, 2650, 2774, 3007, 3833, 4083 |
| BspCNI | CTCAG | 6 cut(s) | 711, 1842, 2429, 3155, 3460, 4131 |
| BspDI | ATCGAT | 2 cut(s) | 1341, 2886 |
| BspHI | TCATGA | 2 cut(s) | 3238, 3735 |
| BspLI | GGNNCC | 6 cut(s) | 511, 2217, 2577, 3135, 3594, 4070 |
| BspMAI | CTGCAG | 7 cut(s) | 619, 1296, 1536, 3103, 3384, 3910, 3943 |
| BspMI | ACCTGC | 2 cut(s) | 1493, 3676 |
| BspPI | GGATC | 6 cut(s) | 2210, 2223, 3128, 3141, 3424, 4103 |
| BspT107I | GGYRCC | 1 cut(s) | 4068 |
| BspTI | CTTAAG | 1 cut(s) | 2224 |
| BspTNI | GGTCTC | 2 cut(s) | 68, 3183 |
| BsrBI | CCGCTC | 1 cut(s) | 4012 |
| BsrDI | GCAATG | 5 cut(s) | 645, 1874, 2594, 3062, 3083 |
| BsrFI | RCCGGY | 1 cut(s) | 1026 |
| BssAI | RCCGGY | 1 cut(s) | 1026 |
| BssECI | CCNNGG | 8 cut(s) | 513, 834, 1325, 1718, 1981, 2211, 2489, 3433 |
| BssSI | CACGAG | 1 cut(s) | 1562 |
| BssT1I | CCWWGG | 5 cut(s) | 513, 834, 1325, 2211, 3433 |
| Bst2BI | CACGAG | 1 cut(s) | 1562 |
| Bst2UI | CCWGG | 4 cut(s) | 1982, 2490, 3597, 3830 |
| Bst6I | CTCTTC | 7 cut(s) | 109, 337, 371, 474, 1803, 3513, 3634 |
| BstAFI | CTTAAG | 1 cut(s) | 2224 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 446, 1873 |
| BstC8I | GCNNGC | 9 cut(s) | 751, 763, 1602, 1874, 2172, 2680, 2899, 2939, 3327 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 875 |
| BstF5I | GGATG | 8 cut(s) | 200, 979, 1139, 1948, 2219, 2499, 2547, 3792 |
| BstHHI | GCGC | 3 cut(s) | 767, 3826, 3866 |
| BstMAI | GTCTC | 9 cut(s) | 68, 225, 1142, 1237, 1965, 2516, 3183, 3379, 3408 |
| BstNI | CCWGG | 4 cut(s) | 1982, 2490, 3597, 3830 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1249 |
| BstSCI | CCNGG | 6 cut(s) | 1717, 1980, 2488, 2725, 3595, 3828 |
| BstSLI | GKGCMC | 1 cut(s) | 3534 |
| BstV2I | GAAGAC | 1 cut(s) | 504 |
| BstX2I | RGATCY | 7 cut(s) | 25, 1577, 2215, 3133, 3429, 3967, 4095 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2646, 4079 |
| BstYI | RGATCY | 7 cut(s) | 25, 1577, 2215, 3133, 3429, 3967, 4095 |
| Bsu15I | ATCGAT | 2 cut(s) | 1341, 2886 |
| BsuI | GTATCC | 1 cut(s) | 1300 |
| BsuRI | GGCC | 7 cut(s) | 833, 2379, 2650, 2774, 3007, 3833, 4083 |
| BsuTUI | ATCGAT | 2 cut(s) | 1341, 2886 |
| BtsCI | GGATG | 8 cut(s) | 200, 979, 1139, 1948, 2219, 2499, 2547, 3792 |
| BtsI | GCAGTG | 4 cut(s) | 594, 1358, 2186, 3992 |
| BveI | ACCTGC | 2 cut(s) | 1493, 3676 |
| Cac8I | GCNNGC | 9 cut(s) | 751, 763, 1602, 1874, 2172, 2680, 2899, 2939, 3327 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1135, 2588, 3388 |
| CciI | TCATGA | 2 cut(s) | 3238, 3735 |
| CfoI | GCGC | 3 cut(s) | 767, 3826, 3866 |
| Cfr10I | RCCGGY | 1 cut(s) | 1026 |
| Cfr13I | GGNCC | 5 cut(s) | 736, 831, 1567, 1813, 2575 |
| ClaI | ATCGAT | 2 cut(s) | 1341, 2886 |
| Csp6I | GTAC | 4 cut(s) | 1460, 1822, 3221, 4069 |
| CviQI | GTAC | 4 cut(s) | 1460, 1822, 3221, 4069 |
| DraI | TTTAAA | 1 cut(s) | 1065 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 914 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 914 |
| EaeI | YGGCCR | 5 cut(s) | 2377, 2648, 3005, 3831, 4081 |
| Eam1104I | CTCTTC | 7 cut(s) | 109, 337, 371, 474, 1803, 3513, 3634 |
| EarI | CTCTTC | 7 cut(s) | 109, 337, 371, 474, 1803, 3513, 3634 |
| Ecl136II | GAGCTC | 3 cut(s) | 259, 529, 3770 |
| Eco130I | CCWWGG | 5 cut(s) | 513, 834, 1325, 2211, 3433 |
| Eco24I | GRGCYC | 3 cut(s) | 261, 531, 3772 |
| Eco31I | GGTCTC | 2 cut(s) | 68, 3183 |
| Eco32I | GATATC | 3 cut(s) | 1339, 3236, 3958 |
| Eco47I | GGWCC | 4 cut(s) | 736, 1567, 1813, 2575 |
| Eco53kI | GAGCTC | 3 cut(s) | 259, 529, 3770 |
| Eco57I | CTGAAG | 5 cut(s) | 395, 581, 1353, 2072, 3410 |
| Eco88I | CYCGRG | 1 cut(s) | 3186 |
| EcoICRI | GAGCTC | 3 cut(s) | 259, 529, 3770 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 875 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1813, 2575 |
| EcoRI | GAATTC | 4 cut(s) | 586, 1688, 2229, 3632 |
| EcoRII | CCWGG | 4 cut(s) | 1980, 2488, 3595, 3828 |
| EcoRV | GATATC | 3 cut(s) | 1339, 3236, 3958 |
| EcoT14I | CCWWGG | 5 cut(s) | 513, 834, 1325, 2211, 3433 |
| EcoT22I | ATGCAT | 5 cut(s) | 353, 1874, 2672, 3085, 3651 |
| EcoT38I | GRGCYC | 3 cut(s) | 261, 531, 3772 |
| ErhI | CCWWGG | 5 cut(s) | 513, 834, 1325, 2211, 3433 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 4037, 4069, 4131 |
| FaqI | GGGAC | 3 cut(s) | 1125, 2081, 3889 |
| FbaI | TGATCA | 1 cut(s) | 3579 |
| FblI | GTMKAC | 1 cut(s) | 2473 |
| FokI | GGATG | 8 cut(s) | 187, 986, 1126, 1955, 2206, 2506, 2554, 3799 |
| FriOI | GRGCYC | 3 cut(s) | 261, 531, 3772 |
| FspBI | CTAG | 7 cut(s) | 314, 1583, 2393, 2526, 2894, 3570, 3776 |
| FspI | TGCGCA | 1 cut(s) | 3825 |
| GlaI | GCGC | 3 cut(s) | 766, 3825, 3865 |
| GsaI | CCCAGC | 1 cut(s) | 3786 |
| GsuI | CTGGAG | 3 cut(s) | 828, 1802, 2167 |
| HaeIII | GGCC | 7 cut(s) | 833, 2379, 2650, 2774, 3007, 3833, 4083 |
| HapII | CCGG | 3 cut(s) | 1027, 1718, 2726 |
| HhaI | GCGC | 3 cut(s) | 767, 3826, 3866 |
| Hin6I | GCGC | 3 cut(s) | 765, 3824, 3864 |
| HinP1I | GCGC | 3 cut(s) | 765, 3824, 3864 |
| HincII | GTYRAC | 2 cut(s) | 570, 1993 |
| HindII | GTYRAC | 2 cut(s) | 570, 1993 |
| HindIII | AAGCTT | 1 cut(s) | 1553 |
| HpaII | CCGG | 3 cut(s) | 1027, 1718, 2726 |
| HphI | GGTGA | 6 cut(s) | 2044, 2378, 2974, 3467, 3574, 3803 |
| Hpy99I | CGWCG | 1 cut(s) | 2277 |
| HpyAV | CCTTC | 7 cut(s) | 53, 94, 1098, 2179, 2303, 2618, 3938 |
| HpyCH4IV | ACGT | 1 cut(s) | 2997 |
| HpySE526I | ACGT | 1 cut(s) | 2997 |
| HspAI | GCGC | 3 cut(s) | 765, 3824, 3864 |
| KpnI | GGTACC | 1 cut(s) | 4072 |
| Ksp22I | TGATCA | 1 cut(s) | 3579 |
| MaeI | CTAG | 7 cut(s) | 314, 1583, 2393, 2526, 2894, 3570, 3776 |
| MaeII | ACGT | 1 cut(s) | 2997 |
| MbiI | CCGCTC | 1 cut(s) | 4012 |
| MfeI | CAATTG | 1 cut(s) | 3912 |
| MflI | RGATCY | 7 cut(s) | 25, 1577, 2215, 3133, 3429, 3967, 4095 |
| MhlI | GDGCHC | 6 cut(s) | 261, 531, 1899, 3534, 3772, 4126 |
| MlsI | TGGCCA | 3 cut(s) | 2379, 2650, 4083 |
| MluNI | TGGCCA | 3 cut(s) | 2379, 2650, 4083 |
| MlyI | GAGTC | 9 cut(s) | 494, 575, 924, 1150, 2103, 2488, 2940, 3453, 3609 |
| MmeI | TCCRAC | 3 cut(s) | 286, 412, 1597 |
| Mox20I | TGGCCA | 3 cut(s) | 2379, 2650, 4083 |
| Mph1103I | ATGCAT | 5 cut(s) | 353, 1874, 2672, 3085, 3651 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2447, 3375 |
| MscI | TGGCCA | 3 cut(s) | 2379, 2650, 4083 |
| MseI | TTAA | 6 cut(s) | 942, 1064, 1187, 2225, 2550, 2835 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1728, 2644, 3587, 3701, 3985 |
| Msp20I | TGGCCA | 3 cut(s) | 2379, 2650, 4083 |
| MspA1I | CMGCKG | 1 cut(s) | 932 |
| MspCI | CTTAAG | 1 cut(s) | 2224 |
| MspI | CCGG | 3 cut(s) | 1027, 1718, 2726 |
| MspR9I | CCNGG | 6 cut(s) | 1719, 1982, 2490, 2727, 3597, 3830 |
| MunI | CAATTG | 1 cut(s) | 3912 |
| Mva1269I | GAATGC | 4 cut(s) | 353, 1237, 2672, 3610 |
| MvaI | CCWGG | 4 cut(s) | 1982, 2490, 3597, 3830 |
| NciI | CCSGG | 2 cut(s) | 1719, 2727 |
| NlaIV | GGNNCC | 6 cut(s) | 511, 2217, 2577, 3135, 3594, 4070 |
| NmuCI | GTSAC | 6 cut(s) | 792, 1072, 1885, 2528, 3484, 3496 |
| NsbI | TGCGCA | 1 cut(s) | 3825 |
| NsiI | ATGCAT | 5 cut(s) | 353, 1874, 2672, 3085, 3651 |
| OliI | CACNNNNGTG | 2 cut(s) | 3701, 3985 |
| PaeI | GCATGC | 3 cut(s) | 753, 1876, 2901 |
| PagI | TCATGA | 2 cut(s) | 3238, 3735 |
| PciI | ACATGT | 3 cut(s) | 2712, 3537, 3621 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1658 |
| PctI | GAATGC | 4 cut(s) | 353, 1237, 2672, 3610 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2447, 3375 |
| PflFI | GACNNNGTC | 1 cut(s) | 1913 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 955, 2181, 2489, 3347 |
| PfoI | TCCNGGA | 1 cut(s) | 3595 |
| PleI | GAGTC | 9 cut(s) | 494, 575, 923, 1150, 2102, 2487, 2939, 3453, 3609 |
| PpsI | GAGTC | 9 cut(s) | 494, 575, 923, 1150, 2102, 2487, 2939, 3453, 3609 |
| PpuMI | RGGWCCY | 2 cut(s) | 1813, 2575 |
| PscI | ACATGT | 3 cut(s) | 2712, 3537, 3621 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1249 |
| PshBI | ATTAAT | 1 cut(s) | 2835 |
| PsiI | TTATAA | 1 cut(s) | 2948 |
| Psp124BI | GAGCTC | 3 cut(s) | 261, 531, 3772 |
| Psp5II | RGGWCCY | 2 cut(s) | 1813, 2575 |
| Psp6I | CCWGG | 4 cut(s) | 1980, 2488, 3595, 3828 |
| PspFI | CCCAGC | 1 cut(s) | 3782 |
| PspGI | CCWGG | 4 cut(s) | 1980, 2488, 3595, 3828 |
| PspN4I | GGNNCC | 6 cut(s) | 511, 2217, 2577, 3135, 3594, 4070 |
| PspPI | GGNCC | 5 cut(s) | 736, 831, 1567, 1813, 2575 |
| PspPPI | RGGWCCY | 2 cut(s) | 1813, 2575 |
| PstI | CTGCAG | 7 cut(s) | 619, 1296, 1536, 3103, 3384, 3910, 3943 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1135, 2588, 3388 |
| PsuI | RGATCY | 7 cut(s) | 25, 1577, 2215, 3133, 3429, 3967, 4095 |
| PsyI | GACNNNGTC | 1 cut(s) | 1913 |
| PvuII | CAGCTG | 1 cut(s) | 932 |
| RsaI | GTAC | 4 cut(s) | 1461, 1823, 3222, 4070 |
| RsaNI | GTAC | 4 cut(s) | 1460, 1822, 3221, 4069 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1728, 2644, 3587, 3701, 3985 |
| SacI | GAGCTC | 3 cut(s) | 261, 531, 3772 |
| SaqAI | TTAA | 6 cut(s) | 942, 1064, 1187, 2225, 2550, 2835 |
| Sau96I | GGNCC | 5 cut(s) | 736, 831, 1567, 1813, 2575 |
| ScaI | AGTACT | 2 cut(s) | 1823, 3222 |
| SchI | GAGTC | 9 cut(s) | 494, 575, 924, 1150, 2103, 2488, 2940, 3453, 3609 |
| ScrFI | CCNGG | 6 cut(s) | 1719, 1982, 2490, 2727, 3597, 3830 |
| SduI | GDGCHC | 6 cut(s) | 261, 531, 1899, 3534, 3772, 4126 |
| SinI | GGWCC | 4 cut(s) | 736, 1567, 1813, 2575 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1728, 2644, 3587, 3701, 3985 |
| SmlI | CTYRAG | 9 cut(s) | 290, 1240, 1439, 2224, 2807, 3258, 3758, 3949, 4003 |
| SmoI | CTYRAG | 9 cut(s) | 290, 1240, 1439, 2224, 2807, 3258, 3758, 3949, 4003 |
| SpeI | ACTAGT | 1 cut(s) | 2525 |
| SphI | GCATGC | 3 cut(s) | 753, 1876, 2901 |
| SsiI | CCGC | 4 cut(s) | 814, 3229, 3478, 4012 |
| SspI | AATATT | 1 cut(s) | 576 |
| SspMI | CTAG | 7 cut(s) | 314, 1583, 2393, 2526, 2894, 3570, 3776 |
| SstI | GAGCTC | 3 cut(s) | 261, 531, 3772 |
| StyD4I | CCNGG | 6 cut(s) | 1717, 1980, 2488, 2725, 3595, 3828 |
| StyI | CCWWGG | 5 cut(s) | 513, 834, 1325, 2211, 3433 |
| TaiI | ACGT | 1 cut(s) | 3000 |
| TaqII | GACCGA | 2 cut(s) | 2223, 2269 |
| TatI | WGTACW | 2 cut(s) | 1821, 3220 |
| Tru1I | TTAA | 6 cut(s) | 942, 1064, 1187, 2225, 2550, 2835 |
| Tru9I | TTAA | 6 cut(s) | 942, 1064, 1187, 2225, 2550, 2835 |
| TseFI | GTSAC | 6 cut(s) | 792, 1072, 1885, 2528, 3484, 3496 |
| Tsp45I | GTSAC | 6 cut(s) | 792, 1072, 1885, 2528, 3484, 3496 |
| TspGWI | ACGGA | 2 cut(s) | 1814, 3008 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1913 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 955, 2181, 2489, 3347 |
| Vha464I | CTTAAG | 1 cut(s) | 2224 |
| VpaK11BI | GGWCC | 4 cut(s) | 736, 1567, 1813, 2575 |
| VspI | ATTAAT | 1 cut(s) | 2835 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 875 |
| XapI | RAATTY | 7 cut(s) | 586, 723, 1209, 1688, 1846, 2229, 3632 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2178 |
| XmiI | GTMKAC | 1 cut(s) | 2473 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2447, 3375 |
| XspI | CTAG | 7 cut(s) | 314, 1583, 2393, 2526, 2894, 3570, 3776 |
| ZrmI | AGTACT | 2 cut(s) | 1823, 3222 |
| Zsp2I | ATGCAT | 5 cut(s) | 353, 1874, 2672, 3085, 3651 |