Tornado 1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55540 AT5G55540 |
| fragaria_vesca | FvH4_3g23950 |
| malus_domestica | MD03G1189500.v1.1 |
| prunus_persica | Prupe.4G231800_v2.0.a1 |
| pyrus_communis | pycom03g14240 |
| rosa_chinensis | RchiOBHm_Chr5g0042451 |
| rosa_laevigata | RLG00000034127 |
| rosa_multiflora | Rmu_sc0002779.1_g000005 Rmu_sc0016438.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00038240 |
| rosa_rugosa | Rorug05G0200300 |
| rosa_samantha | Rh5AG286400 Rh5CG323200 |
| rosa_wichuraiana | Rw5G026610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2948 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3709 |
| Acc36I | ACCTGC | 4 cut(s) | 1017, 1493, 1930, 3679 |
| AccB1I | GGYRCC | 1 cut(s) | 3718 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1724, 3350 |
| AccI | GTMKAC | 1 cut(s) | 1511 |
| AccIII | TCCGGA | 1 cut(s) | 3149 |
| AciI | CCGC | 5 cut(s) | 2272, 2275, 2678, 3101, 3783 |
| AclWI | GGATC | 7 cut(s) | 2579, 2599, 3128, 3141, 3335, 3427, 4100 |
| AcoI | YGGCCR | 1 cut(s) | 2377 |
| AcsI | RAATTY | 5 cut(s) | 723, 1688, 1846, 2229, 3635 |
| AcuI | CTGAAG | 4 cut(s) | 395, 581, 1802, 3413 |
| AfaI | GTAC | 7 cut(s) | 1461, 1896, 2669, 2816, 3222, 3534, 4067 |
| AflII | CTTAAG | 3 cut(s) | 458, 1439, 2224 |
| AflIII | ACRYGT | 2 cut(s) | 2712, 3624 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2802 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 3255, 3287, 3447, 3479 |
| Alw21I | GWGCWC | 3 cut(s) | 531, 769, 4123 |
| Alw26I | GTCTC | 7 cut(s) | 1237, 1846, 1965, 2233, 3183, 3382, 3411 |
| AlwI | GGATC | 7 cut(s) | 2579, 2599, 3128, 3141, 3335, 3427, 4100 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 3265, 3391, 3442, 3875 |
| Ama87I | CYCGRG | 2 cut(s) | 770, 3186 |
| Aor13HI | TCCGGA | 1 cut(s) | 3149 |
| AoxI | GGCC | 6 cut(s) | 1402, 1415, 2377, 2523, 2772, 3183 |
| ApoI | RAATTY | 5 cut(s) | 723, 1688, 1846, 2229, 3635 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2497, 3542 |
| AspLEI | GCGC | 2 cut(s) | 521, 749 |
| AspS9I | GGNCC | 7 cut(s) | 1288, 1567, 1813, 3184, 3296, 3702, 4006 |
| AsuC2I | CCSGG | 2 cut(s) | 755, 3290 |
| AsuHPI | GGTGA | 5 cut(s) | 475, 2051, 2378, 2974, 3577 |
| AsuII | TTCGAA | 1 cut(s) | 721 |
| AvaI | CYCGRG | 2 cut(s) | 770, 3186 |
| AvaII | GGWCC | 6 cut(s) | 1288, 1567, 1813, 3296, 3702, 4006 |
| AxyI | CCTNAGG | 2 cut(s) | 2927, 4001 |
| BalI | TGGCCA | 1 cut(s) | 2379 |
| BamHI | GGATCC | 1 cut(s) | 3133 |
| BanI | GGYRCC | 1 cut(s) | 3718 |
| BanII | GRGCYC | 3 cut(s) | 40, 531, 3775 |
| BbsI | GAAGAC | 2 cut(s) | 504, 2285 |
| Bbv12I | GWGCWC | 3 cut(s) | 531, 769, 4123 |
| BclI | TGATCA | 1 cut(s) | 390 |
| BcnI | CCSGG | 2 cut(s) | 755, 3290 |
| BcoDI | GTCTC | 7 cut(s) | 1237, 1846, 1965, 2233, 3183, 3382, 3411 |
| BfaI | CTAG | 3 cut(s) | 1583, 2739, 3779 |
| BfmI | CTRYAG | 6 cut(s) | 485, 615, 1040, 3894, 3936, 4096 |
| BfoI | RGCGCY | 1 cut(s) | 750 |
| BfrI | CTTAAG | 3 cut(s) | 458, 1439, 2224 |
| BfuAI | ACCTGC | 4 cut(s) | 1017, 1493, 1930, 3679 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3833 |
| BglII | AGATCT | 2 cut(s) | 25, 1577 |
| BmcAI | AGTACT | 1 cut(s) | 3222 |
| Bme18I | GGWCC | 6 cut(s) | 1288, 1567, 1813, 3296, 3702, 4006 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2802 |
| BmeT110I | CYCGRG | 2 cut(s) | 770, 3186 |
| BmgT120I | GGNCC | 7 cut(s) | 1288, 1567, 1813, 3184, 3296, 3702, 4006 |
| BmiI | GGNNCC | 5 cut(s) | 2217, 3135, 3720, 3772, 4007 |
| BmrI | ACTGGG | 2 cut(s) | 1586, 2339 |
| BmuI | ACTGGG | 2 cut(s) | 1586, 2339 |
| BoxI | GACNNNNGTC | 2 cut(s) | 809, 3466 |
| BpiI | GAAGAC | 2 cut(s) | 504, 2285 |
| BpmI | CTGGAG | 1 cut(s) | 453 |
| Bpu10I | CCTNAGC | 3 cut(s) | 834, 1829, 3258 |
| Bpu14I | TTCGAA | 1 cut(s) | 721 |
| BpuEI | CTTGAG | 6 cut(s) | 311, 1261, 2828, 3556, 3746, 3931 |
| BpuMI | CCSGG | 2 cut(s) | 755, 3290 |
| BsaI | GGTCTC | 1 cut(s) | 3183 |
| BsaJI | CCNNGG | 7 cut(s) | 1325, 1717, 1718, 1981, 2974, 3129, 3436 |
| BsaWI | WCCGGW | 3 cut(s) | 3149, 3228, 4008 |
| Bse118I | RCCGGY | 1 cut(s) | 3878 |
| Bse1I | ACTGG | 8 cut(s) | 811, 1592, 1755, 2334, 2397, 2526, 2559, 4027 |
| Bse21I | CCTNAGG | 2 cut(s) | 2927, 4001 |
| Bse3DI | GCAATG | 4 cut(s) | 1874, 2125, 3062, 3083 |
| BseAI | TCCGGA | 1 cut(s) | 3149 |
| BseDI | CCNNGG | 7 cut(s) | 1325, 1717, 1718, 1981, 2974, 3129, 3436 |
| BseGI | GGATG | 4 cut(s) | 2219, 2401, 2934, 3298 |
| BseMI | GCAATG | 4 cut(s) | 1874, 2125, 3062, 3083 |
| BseNI | ACTGG | 8 cut(s) | 811, 1592, 1755, 2334, 2397, 2526, 2559, 4027 |
| BseRI | GAGGAG | 1 cut(s) | 494 |
| BseYI | CCCAGC | 2 cut(s) | 2872, 3274 |
| BsgI | GTGCAG | 4 cut(s) | 1883, 3209, 3605, 3930 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2237 |
| BshFI | GGCC | 6 cut(s) | 1404, 1417, 2379, 2525, 2774, 3185 |
| BshNI | GGYRCC | 1 cut(s) | 3718 |
| BsiEI | CGRYCG | 1 cut(s) | 2237 |
| BsiHKAI | GWGCWC | 3 cut(s) | 531, 769, 4123 |
| BsiHKCI | CYCGRG | 2 cut(s) | 770, 3186 |
| BsiSI | CCGG | 8 cut(s) | 754, 814, 1291, 3150, 3229, 3290, 3879, 4009 |
| BslFI | GGGAC | 3 cut(s) | 1125, 2081, 4019 |
| BsmAI | GTCTC | 7 cut(s) | 1237, 1846, 1965, 2233, 3183, 3382, 3411 |
| BsmFI | GGGAC | 3 cut(s) | 1125, 2081, 4019 |
| BsmI | GAATGC | 3 cut(s) | 1237, 3310, 3613 |
| BsnI | GGCC | 6 cut(s) | 1404, 1417, 2379, 2525, 2774, 3185 |
| Bso31I | GGTCTC | 1 cut(s) | 3183 |
| BsoBI | CYCGRG | 2 cut(s) | 770, 3186 |
| Bsp119I | TTCGAA | 1 cut(s) | 721 |
| Bsp1286I | GDGCHC | 5 cut(s) | 40, 531, 769, 3775, 4123 |
| Bsp13I | TCCGGA | 1 cut(s) | 3149 |
| Bsp19I | CCATGG | 1 cut(s) | 2974 |
| BspACI | CCGC | 5 cut(s) | 2272, 2275, 2678, 3101, 3783 |
| BspANI | GGCC | 6 cut(s) | 1404, 1417, 2379, 2525, 2774, 3185 |
| BspEI | TCCGGA | 1 cut(s) | 3149 |
| BspHI | TCATGA | 2 cut(s) | 3238, 3738 |
| BspLI | GGNNCC | 5 cut(s) | 2217, 3135, 3720, 3772, 4007 |
| BspMAI | CTGCAG | 4 cut(s) | 619, 1044, 3898, 3940 |
| BspMI | ACCTGC | 4 cut(s) | 1017, 1493, 1930, 3679 |
| BspPI | GGATC | 7 cut(s) | 2579, 2599, 3128, 3141, 3335, 3427, 4100 |
| BspQI | GCTCTTC | 2 cut(s) | 519, 3618 |
| BspT104I | TTCGAA | 1 cut(s) | 721 |
| BspT107I | GGYRCC | 1 cut(s) | 3718 |
| BspTI | CTTAAG | 3 cut(s) | 458, 1439, 2224 |
| BspTNI | GGTCTC | 1 cut(s) | 3183 |
| BsrDI | GCAATG | 4 cut(s) | 1874, 2125, 3062, 3083 |
| BsrFI | RCCGGY | 1 cut(s) | 3878 |
| BsrI | ACTGG | 8 cut(s) | 811, 1592, 1755, 2334, 2397, 2526, 2559, 4027 |
| BssAI | RCCGGY | 1 cut(s) | 3878 |
| BssECI | CCNNGG | 7 cut(s) | 1325, 1717, 1718, 1981, 2974, 3129, 3436 |
| BssT1I | CCWWGG | 2 cut(s) | 1325, 2974 |
| Bst6I | CTCTTC | 9 cut(s) | 371, 519, 944, 1217, 1549, 1803, 2623, 3516, 3618 |
| BstAFI | CTTAAG | 3 cut(s) | 458, 1439, 2224 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1873, 3875 |
| BstBI | TTCGAA | 1 cut(s) | 721 |
| BstC8I | GCNNGC | 8 cut(s) | 751, 1296, 1602, 1874, 2172, 2899, 3787, 3909 |
| BstDSI | CCRYGG | 1 cut(s) | 2974 |
| BstEII | GGTNACC | 1 cut(s) | 3583 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 875, 3257 |
| BstF5I | GGATG | 4 cut(s) | 2219, 2401, 2934, 3298 |
| BstH2I | RGCGCY | 1 cut(s) | 750 |
| BstHHI | GCGC | 2 cut(s) | 521, 749 |
| BstMAI | GTCTC | 7 cut(s) | 1237, 1846, 1965, 2233, 3183, 3382, 3411 |
| BstMCI | CGRYCG | 1 cut(s) | 2237 |
| BstNSI | RCATGY | 7 cut(s) | 1450, 1876, 2716, 2901, 3112, 3628, 3656 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 809, 3466 |
| BstPI | GGTNACC | 1 cut(s) | 3583 |
| BstSFI | CTRYAG | 6 cut(s) | 485, 615, 1040, 3894, 3936, 4096 |
| BstV2I | GAAGAC | 2 cut(s) | 504, 2285 |
| BstX2I | RGATCY | 6 cut(s) | 25, 1577, 2584, 3133, 3432, 4092 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2646 |
| BstYI | RGATCY | 6 cut(s) | 25, 1577, 2584, 3133, 3432, 4092 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2927, 4001 |
| BsuRI | GGCC | 6 cut(s) | 1404, 1417, 2379, 2525, 2774, 3185 |
| BtgI | CCRYGG | 1 cut(s) | 2974 |
| BtgZI | GCGATG | 1 cut(s) | 3464 |
| BtsCI | GGATG | 4 cut(s) | 2219, 2401, 2934, 3298 |
| BtsI | GCAGTG | 4 cut(s) | 594, 624, 1358, 2186 |
| BtsIMutI | CAGTG | 8 cut(s) | 557, 594, 624, 1358, 2013, 2046, 2186, 2533 |
| BveI | ACCTGC | 4 cut(s) | 1017, 1493, 1930, 3679 |
| Cac8I | GCNNGC | 8 cut(s) | 751, 1296, 1602, 1874, 2172, 2899, 3787, 3909 |
| CaiI | CAGNNNCTG | 4 cut(s) | 3265, 3391, 3442, 3875 |
| CciI | TCATGA | 2 cut(s) | 3238, 3738 |
| CfoI | GCGC | 2 cut(s) | 521, 749 |
| Cfr10I | RCCGGY | 1 cut(s) | 3878 |
| Cfr13I | GGNCC | 7 cut(s) | 1288, 1567, 1813, 3184, 3296, 3702, 4006 |
| CsiI | ACCWGGT | 1 cut(s) | 1569 |
| Csp6I | GTAC | 7 cut(s) | 1460, 1895, 2668, 2815, 3221, 3533, 4066 |
| CviQI | GTAC | 7 cut(s) | 1460, 1895, 2668, 2815, 3221, 3533, 4066 |
| DraI | TTTAAA | 1 cut(s) | 1065 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3709 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2802 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3709 |
| EaeI | YGGCCR | 1 cut(s) | 2377 |
| Eam1104I | CTCTTC | 9 cut(s) | 371, 519, 944, 1217, 1549, 1803, 2623, 3516, 3618 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2802 |
| EarI | CTCTTC | 9 cut(s) | 371, 519, 944, 1217, 1549, 1803, 2623, 3516, 3618 |
| Ecl136II | GAGCTC | 1 cut(s) | 529 |
| Eco130I | CCWWGG | 2 cut(s) | 1325, 2974 |
| Eco147I | AGGCCT | 1 cut(s) | 1417 |
| Eco24I | GRGCYC | 3 cut(s) | 40, 531, 3775 |
| Eco31I | GGTCTC | 1 cut(s) | 3183 |
| Eco32I | GATATC | 2 cut(s) | 3236, 3955 |
| Eco47I | GGWCC | 6 cut(s) | 1288, 1567, 1813, 3296, 3702, 4006 |
| Eco53kI | GAGCTC | 1 cut(s) | 529 |
| Eco57I | CTGAAG | 4 cut(s) | 395, 581, 1802, 3413 |
| Eco81I | CCTNAGG | 2 cut(s) | 2927, 4001 |
| Eco88I | CYCGRG | 2 cut(s) | 770, 3186 |
| Eco91I | GGTNACC | 1 cut(s) | 3583 |
| EcoICRI | GAGCTC | 1 cut(s) | 529 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 875, 3257 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1813 |
| EcoO65I | GGTNACC | 1 cut(s) | 3583 |
| EcoRI | GAATTC | 2 cut(s) | 1688, 2229 |
| EcoRV | GATATC | 2 cut(s) | 3236, 3955 |
| EcoT14I | CCWWGG | 2 cut(s) | 1325, 2974 |
| EcoT22I | ATGCAT | 2 cut(s) | 1874, 3654 |
| EcoT38I | GRGCYC | 3 cut(s) | 40, 531, 3775 |
| ErhI | CCWWGG | 2 cut(s) | 1325, 2974 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 1800, 1832, 4128 |
| FaqI | GGGAC | 3 cut(s) | 1125, 2081, 4019 |
| FauI | CCCGC | 2 cut(s) | 2268, 2671 |
| FbaI | TGATCA | 1 cut(s) | 390 |
| FblI | GTMKAC | 1 cut(s) | 1511 |
| FokI | GGATG | 4 cut(s) | 2206, 2408, 2921, 3305 |
| FriOI | GRGCYC | 3 cut(s) | 40, 531, 3775 |
| FspBI | CTAG | 3 cut(s) | 1583, 2739, 3779 |
| GlaI | GCGC | 2 cut(s) | 520, 748 |
| GsaI | CCCAGC | 2 cut(s) | 2876, 3278 |
| GsuI | CTGGAG | 1 cut(s) | 453 |
| HaeII | RGCGCY | 1 cut(s) | 750 |
| HaeIII | GGCC | 6 cut(s) | 1404, 1417, 2379, 2525, 2774, 3185 |
| HapII | CCGG | 8 cut(s) | 754, 814, 1291, 3150, 3229, 3290, 3879, 4009 |
| HhaI | GCGC | 2 cut(s) | 521, 749 |
| Hin6I | GCGC | 2 cut(s) | 519, 747 |
| HinP1I | GCGC | 2 cut(s) | 519, 747 |
| HincII | GTYRAC | 3 cut(s) | 570, 1951, 1993 |
| HindII | GTYRAC | 3 cut(s) | 570, 1951, 1993 |
| HindIII | AAGCTT | 1 cut(s) | 2470 |
| HpaI | GTTAAC | 1 cut(s) | 1951 |
| HpaII | CCGG | 8 cut(s) | 754, 814, 1291, 3150, 3229, 3290, 3879, 4009 |
| HphI | GGTGA | 5 cut(s) | 475, 2051, 2378, 2974, 3577 |
| Hpy99I | CGWCG | 2 cut(s) | 1385, 3645 |
| HpyCH4IV | ACGT | 1 cut(s) | 306 |
| HpySE526I | ACGT | 1 cut(s) | 306 |
| HspAI | GCGC | 2 cut(s) | 519, 747 |
| Kpn2I | TCCGGA | 1 cut(s) | 3149 |
| Ksp22I | TGATCA | 1 cut(s) | 390 |
| KspAI | GTTAAC | 1 cut(s) | 1951 |
| LguI | GCTCTTC | 2 cut(s) | 519, 3618 |
| LmnI | GCTCC | 8 cut(s) | 137, 434, 481, 2417, 2792, 3770, 3857, 3866 |
| MabI | ACCWGGT | 1 cut(s) | 1569 |
| MaeI | CTAG | 3 cut(s) | 1583, 2739, 3779 |
| MaeII | ACGT | 1 cut(s) | 306 |
| MaeIII | GTNAC | 8 cut(s) | 792, 1072, 1885, 2528, 2876, 3320, 3499, 3583 |
| MfeI | CAATTG | 1 cut(s) | 3900 |
| MflI | RGATCY | 6 cut(s) | 25, 1577, 2584, 3133, 3432, 4092 |
| MhlI | GDGCHC | 5 cut(s) | 40, 531, 769, 3775, 4123 |
| MlsI | TGGCCA | 1 cut(s) | 2379 |
| MluNI | TGGCCA | 1 cut(s) | 2379 |
| MlyI | GAGTC | 8 cut(s) | 494, 575, 930, 1150, 2103, 2488, 3140, 3456 |
| MmeI | TCCRAC | 3 cut(s) | 1597, 3168, 3368 |
| Mox20I | TGGCCA | 1 cut(s) | 2379 |
| Mph1103I | ATGCAT | 2 cut(s) | 1874, 3654 |
| MroI | TCCGGA | 1 cut(s) | 3149 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2497, 3542 |
| MscI | TGGCCA | 1 cut(s) | 2379 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1728, 2644, 3590, 3982 |
| Msp20I | TGGCCA | 1 cut(s) | 2379 |
| MspA1I | CMGCKG | 5 cut(s) | 217, 932, 2872, 3278, 3785 |
| MspCI | CTTAAG | 3 cut(s) | 458, 1439, 2224 |
| MspI | CCGG | 8 cut(s) | 754, 814, 1291, 3150, 3229, 3290, 3879, 4009 |
| MunI | CAATTG | 1 cut(s) | 3900 |
| Mva1269I | GAATGC | 3 cut(s) | 1237, 3310, 3613 |
| NciI | CCSGG | 2 cut(s) | 755, 3290 |
| NcoI | CCATGG | 1 cut(s) | 2974 |
| NlaIV | GGNNCC | 5 cut(s) | 2217, 3135, 3720, 3772, 4007 |
| NmuCI | GTSAC | 6 cut(s) | 792, 1072, 2528, 3320, 3499, 3583 |
| NsiI | ATGCAT | 2 cut(s) | 1874, 3654 |
| NspI | RCATGY | 7 cut(s) | 1450, 1876, 2716, 2901, 3112, 3628, 3656 |
| NspV | TTCGAA | 1 cut(s) | 721 |
| PaeI | GCATGC | 2 cut(s) | 1876, 2901 |
| PagI | TCATGA | 2 cut(s) | 3238, 3738 |
| PasI | CCCWGGG | 1 cut(s) | 1718 |
| PceI | AGGCCT | 1 cut(s) | 1417 |
| PciI | ACATGT | 2 cut(s) | 2712, 3624 |
| PciSI | GCTCTTC | 2 cut(s) | 519, 3618 |
| PctI | GAATGC | 3 cut(s) | 1237, 3310, 3613 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2497, 3542 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1724, 3350 |
| PfoI | TCCNGGA | 1 cut(s) | 2488 |
| Ple19I | CGATCG | 1 cut(s) | 2237 |
| PleI | GAGTC | 8 cut(s) | 494, 575, 930, 1150, 2102, 2487, 3140, 3456 |
| PpsI | GAGTC | 8 cut(s) | 494, 575, 930, 1150, 2102, 2487, 3140, 3456 |
| PpuMI | RGGWCCY | 1 cut(s) | 1813 |
| PscI | ACATGT | 2 cut(s) | 2712, 3624 |
| PshAI | GACNNNNGTC | 2 cut(s) | 809, 3466 |
| PsiI | TTATAA | 1 cut(s) | 2948 |
| Psp124BI | GAGCTC | 1 cut(s) | 531 |
| Psp5II | RGGWCCY | 1 cut(s) | 1813 |
| PspEI | GGTNACC | 1 cut(s) | 3583 |
| PspFI | CCCAGC | 2 cut(s) | 2872, 3274 |
| PspN4I | GGNNCC | 5 cut(s) | 2217, 3135, 3720, 3772, 4007 |
| PspPI | GGNCC | 7 cut(s) | 1288, 1567, 1813, 3184, 3296, 3702, 4006 |
| PspPPI | RGGWCCY | 1 cut(s) | 1813 |
| PstI | CTGCAG | 4 cut(s) | 619, 1044, 3898, 3940 |
| PstNI | CAGNNNCTG | 4 cut(s) | 3265, 3391, 3442, 3875 |
| PsuI | RGATCY | 6 cut(s) | 25, 1577, 2584, 3133, 3432, 4092 |
| PvuI | CGATCG | 1 cut(s) | 2237 |
| PvuII | CAGCTG | 4 cut(s) | 217, 932, 2872, 3278 |
| RsaI | GTAC | 7 cut(s) | 1461, 1896, 2669, 2816, 3222, 3534, 4067 |
| RsaNI | GTAC | 7 cut(s) | 1460, 1895, 2668, 2815, 3221, 3533, 4066 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1728, 2644, 3590, 3982 |
| SacI | GAGCTC | 1 cut(s) | 531 |
| SapI | GCTCTTC | 2 cut(s) | 519, 3618 |
| Sau96I | GGNCC | 7 cut(s) | 1288, 1567, 1813, 3184, 3296, 3702, 4006 |
| ScaI | AGTACT | 1 cut(s) | 3222 |
| SchI | GAGTC | 8 cut(s) | 494, 575, 930, 1150, 2103, 2488, 3140, 3456 |
| SduI | GDGCHC | 5 cut(s) | 40, 531, 769, 3775, 4123 |
| SexAI | ACCWGGT | 1 cut(s) | 1569 |
| SfcI | CTRYAG | 6 cut(s) | 485, 615, 1040, 3894, 3936, 4096 |
| SfuI | TTCGAA | 1 cut(s) | 721 |
| SinI | GGWCC | 6 cut(s) | 1288, 1567, 1813, 3296, 3702, 4006 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1728, 2644, 3590, 3982 |
| SmlI | CTYRAG | 9 cut(s) | 290, 458, 1240, 1439, 2224, 2807, 3571, 3761, 3946 |
| SmoI | CTYRAG | 9 cut(s) | 290, 458, 1240, 1439, 2224, 2807, 3571, 3761, 3946 |
| SphI | GCATGC | 2 cut(s) | 1876, 2901 |
| SseBI | AGGCCT | 1 cut(s) | 1417 |
| SsiI | CCGC | 5 cut(s) | 2272, 2275, 2678, 3101, 3783 |
| SspI | AATATT | 3 cut(s) | 576, 1339, 2136 |
| SspMI | CTAG | 3 cut(s) | 1583, 2739, 3779 |
| SstI | GAGCTC | 1 cut(s) | 531 |
| StuI | AGGCCT | 1 cut(s) | 1417 |
| StyI | CCWWGG | 2 cut(s) | 1325, 2974 |
| TaiI | ACGT | 1 cut(s) | 309 |
| TaqII | GACCGA | 1 cut(s) | 1394 |
| TatI | WGTACW | 1 cut(s) | 3220 |
| TauI | GCSGC | 2 cut(s) | 2275, 3785 |
| TscAI | CASTG | 8 cut(s) | 564, 601, 624, 1365, 2013, 2046, 2186, 2533 |
| TseFI | GTSAC | 6 cut(s) | 792, 1072, 2528, 3320, 3499, 3583 |
| Tsp45I | GTSAC | 6 cut(s) | 792, 1072, 2528, 3320, 3499, 3583 |
| TspGWI | ACGGA | 2 cut(s) | 1060, 3203 |
| TspRI | CASTG | 8 cut(s) | 564, 601, 624, 1365, 2013, 2046, 2186, 2533 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1724, 3350 |
| Vha464I | CTTAAG | 3 cut(s) | 458, 1439, 2224 |
| VpaK11BI | GGWCC | 6 cut(s) | 1288, 1567, 1813, 3296, 3702, 4006 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 875, 3257 |
| XapI | RAATTY | 5 cut(s) | 723, 1688, 1846, 2229, 3635 |
| XceI | RCATGY | 7 cut(s) | 1450, 1876, 2716, 2901, 3112, 3628, 3656 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 656, 2178, 3782 |
| XmiI | GTMKAC | 1 cut(s) | 1511 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2497, 3542 |
| XspI | CTAG | 3 cut(s) | 1583, 2739, 3779 |
| ZrmI | AGTACT | 1 cut(s) | 3222 |
| Zsp2I | ATGCAT | 2 cut(s) | 1874, 3654 |