Tornado 1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55540 AT5G55540 |
| fragaria_vesca | FvH4_3g23950 |
| malus_domestica | MD03G1189500.v1.1 |
| prunus_persica | Prupe.4G231800_v2.0.a1 |
| pyrus_communis | pycom03g14240 |
| rosa_chinensis | RchiOBHm_Chr5g0042451 |
| rosa_laevigata | RLG00000034127 |
| rosa_multiflora | Rmu_sc0002779.1_g000005 Rmu_sc0016438.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00038240 |
| rosa_rugosa | Rorug05G0200300 |
| rosa_samantha | Rh5AG286400 Rh5CG323200 |
| rosa_wichuraiana | Rw5G026610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2948 |
| Acc16I | TGCGCA | 1 cut(s) | 3828 |
| Acc36I | ACCTGC | 4 cut(s) | 1493, 1930, 2669, 3679 |
| Acc65I | GGTACC | 1 cut(s) | 4080 |
| AccB1I | GGYRCC | 2 cut(s) | 3718, 4080 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 955, 2181, 2489, 3350 |
| AccBSI | CCGCTC | 1 cut(s) | 4024 |
| AccI | GTMKAC | 1 cut(s) | 2473 |
| AciI | CCGC | 8 cut(s) | 160, 617, 814, 1604, 3004, 3229, 3481, 4024 |
| AclWI | GGATC | 4 cut(s) | 3128, 3141, 3427, 4115 |
| AcoI | YGGCCR | 3 cut(s) | 3005, 3834, 4093 |
| AcsI | RAATTY | 9 cut(s) | 369, 723, 883, 952, 1366, 1688, 1846, 2229, 2457 |
| AcuI | CTGAAG | 3 cut(s) | 395, 581, 3413 |
| AfaI | GTAC | 3 cut(s) | 1823, 3222, 4082 |
| AflIII | ACRYGT | 3 cut(s) | 2712, 3540, 3624 |
| AjnI | CCWGG | 5 cut(s) | 117, 1980, 2488, 3598, 3831 |
| AleI | CACNNNNGTG | 1 cut(s) | 3997 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 3255, 3287, 3296, 3328 |
| Alw21I | GWGCWC | 5 cut(s) | 261, 769, 1899, 3775, 4138 |
| AlwI | GGATC | 4 cut(s) | 3128, 3141, 3427, 4115 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1135, 1424, 3391 |
| Ama87I | CYCGRG | 1 cut(s) | 3186 |
| AoxI | GGCC | 5 cut(s) | 831, 2377, 3005, 3834, 4093 |
| ApeKI | GCWGC | 9 cut(s) | 111, 929, 1118, 1263, 1438, 2941, 3782, 3890, 3950 |
| ApoI | RAATTY | 9 cut(s) | 369, 723, 883, 952, 1366, 1688, 1846, 2229, 2457 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 296, 328, 410, 442, 1387, 1419 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2497 |
| Asp718I | GGTACC | 1 cut(s) | 4080 |
| AspLEI | GCGC | 2 cut(s) | 3829, 3869 |
| AspS9I | GGNCC | 4 cut(s) | 831, 1567, 1813, 2377 |
| AsuC2I | CCSGG | 2 cut(s) | 1719, 2727 |
| AsuHPI | GGTGA | 8 cut(s) | 683, 2051, 2378, 2974, 3470, 3577, 3806, 4087 |
| AvaI | CYCGRG | 1 cut(s) | 3186 |
| AvaII | GGWCC | 2 cut(s) | 1567, 1813 |
| AxyI | CCTNAGG | 1 cut(s) | 4016 |
| BaeGI | GKGCMC | 1 cut(s) | 3537 |
| BalI | TGGCCA | 1 cut(s) | 4095 |
| BamHI | GGATCC | 1 cut(s) | 3133 |
| BanI | GGYRCC | 2 cut(s) | 3718, 4080 |
| BanII | GRGCYC | 3 cut(s) | 261, 1389, 3775 |
| BbsI | GAAGAC | 1 cut(s) | 504 |
| Bbv12I | GWGCWC | 5 cut(s) | 261, 769, 1899, 3775, 4138 |
| BbvI | GCAGC | 9 cut(s) | 98, 941, 1130, 1250, 1425, 2953, 3769, 3902, 3962 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2876, 2910 |
| BciT130I | CCWGG | 5 cut(s) | 119, 1982, 2490, 3600, 3833 |
| BciVI | GTATCC | 1 cut(s) | 1762 |
| BclI | TGATCA | 2 cut(s) | 390, 3582 |
| BcnI | CCSGG | 2 cut(s) | 1719, 2727 |
| BfaI | CTAG | 7 cut(s) | 1583, 2100, 2393, 2526, 2534, 3573, 3779 |
| BfmI | CTRYAG | 6 cut(s) | 1439, 2280, 2474, 3099, 3383, 4111 |
| BfuAI | ACCTGC | 4 cut(s) | 1493, 1930, 2669, 3679 |
| BfuI | GTATCC | 1 cut(s) | 1762 |
| BglII | AGATCT | 3 cut(s) | 25, 1577, 3979 |
| BlpI | GCTNAGC | 1 cut(s) | 3471 |
| BmcAI | AGTACT | 2 cut(s) | 1823, 3222 |
| Bme1390I | CCNGG | 7 cut(s) | 119, 1719, 1982, 2490, 2727, 3600, 3833 |
| Bme18I | GGWCC | 2 cut(s) | 1567, 1813 |
| BmeT110I | CYCGRG | 1 cut(s) | 3186 |
| BmgT120I | GGNCC | 4 cut(s) | 831, 1567, 1813, 2377 |
| BmiI | GGNNCC | 5 cut(s) | 2217, 3135, 3597, 3720, 4082 |
| BmrFI | CCNGG | 7 cut(s) | 119, 1719, 1982, 2490, 2727, 3600, 3833 |
| BmrI | ACTGGG | 4 cut(s) | 816, 1586, 2339, 2870 |
| BmuI | ACTGGG | 4 cut(s) | 816, 1586, 2339, 2870 |
| BpiI | GAAGAC | 1 cut(s) | 504 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 284, 316, 515, 547 |
| BpmI | CTGGAG | 2 cut(s) | 1802, 2167 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1829 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3471 |
| BpuEI | CTTGAG | 6 cut(s) | 311, 1261, 2828, 3243, 3746, 3946 |
| BpuMI | CCSGG | 2 cut(s) | 1719, 2727 |
| Bsa29I | ATCGAT | 2 cut(s) | 1341, 2886 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1341 |
| BsaI | GGTCTC | 1 cut(s) | 3183 |
| BsaJI | CCNNGG | 7 cut(s) | 834, 1325, 1718, 1981, 2974, 3436, 3714 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 950, 980 |
| Bse118I | RCCGGY | 1 cut(s) | 1026 |
| Bse21I | CCTNAGG | 1 cut(s) | 4016 |
| Bse3DI | GCAATG | 6 cut(s) | 1803, 1874, 2125, 2594, 3062, 3083 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1341 |
| BseBI | CCWGG | 5 cut(s) | 119, 1982, 2490, 3600, 3833 |
| BseCI | ATCGAT | 2 cut(s) | 1341, 2886 |
| BseDI | CCNNGG | 7 cut(s) | 834, 1325, 1718, 1981, 2974, 3436, 3714 |
| BseGI | GGATG | 7 cut(s) | 200, 979, 1139, 1183, 2547, 2934, 3795 |
| BseJI | GATNNNNATC | 1 cut(s) | 1341 |
| BseMI | GCAATG | 6 cut(s) | 1803, 1874, 2125, 2594, 3062, 3083 |
| BseMII | CTCAG | 7 cut(s) | 191, 1843, 2430, 3156, 3270, 3462, 4144 |
| BseRI | GAGGAG | 1 cut(s) | 2404 |
| BseSI | GKGCMC | 1 cut(s) | 3537 |
| BseXI | GCAGC | 9 cut(s) | 98, 941, 1130, 1250, 1425, 2953, 3769, 3902, 3962 |
| BseYI | CCCAGC | 2 cut(s) | 2374, 3785 |
| BsgI | GTGCAG | 2 cut(s) | 1020, 3209 |
| BshFI | GGCC | 5 cut(s) | 833, 2379, 3007, 3836, 4095 |
| BshNI | GGYRCC | 2 cut(s) | 3718, 4080 |
| BshVI | ATCGAT | 2 cut(s) | 1341, 2886 |
| BsiHKAI | GWGCWC | 5 cut(s) | 261, 769, 1899, 3775, 4138 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3186 |
| BsiSI | CCGG | 3 cut(s) | 1027, 1718, 2726 |
| BslFI | GGGAC | 4 cut(s) | 1125, 2081, 2206, 3892 |
| BsmBI | CGTCTC | 1 cut(s) | 4080 |
| BsmFI | GGGAC | 4 cut(s) | 1125, 2081, 2206, 3892 |
| BsmI | GAATGC | 4 cut(s) | 1237, 1798, 2672, 3613 |
| BsnI | GGCC | 5 cut(s) | 833, 2379, 3007, 3836, 4095 |
| Bso31I | GGTCTC | 1 cut(s) | 3183 |
| BsoBI | CYCGRG | 1 cut(s) | 3186 |
| Bsp1286I | GDGCHC | 7 cut(s) | 261, 769, 1389, 1899, 3537, 3775, 4138 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3471 |
| Bsp19I | CCATGG | 1 cut(s) | 2974 |
| BspACI | CCGC | 8 cut(s) | 160, 617, 814, 1604, 3004, 3229, 3481, 4024 |
| BspANI | GGCC | 5 cut(s) | 833, 2379, 3007, 3836, 4095 |
| BspCNI | CTCAG | 7 cut(s) | 190, 1842, 2429, 3155, 3271, 3463, 4143 |
| BspDI | ATCGAT | 2 cut(s) | 1341, 2886 |
| BspHI | TCATGA | 2 cut(s) | 3238, 3738 |
| BspLI | GGNNCC | 5 cut(s) | 2217, 3135, 3597, 3720, 4082 |
| BspMAI | CTGCAG | 3 cut(s) | 1443, 3103, 3387 |
| BspMI | ACCTGC | 4 cut(s) | 1493, 1930, 2669, 3679 |
| BspPI | GGATC | 4 cut(s) | 3128, 3141, 3427, 4115 |
| BspQI | GCTCTTC | 1 cut(s) | 3618 |
| BspT107I | GGYRCC | 2 cut(s) | 3718, 4080 |
| BspTNI | GGTCTC | 1 cut(s) | 3183 |
| BsrBI | CCGCTC | 1 cut(s) | 4024 |
| BsrDI | GCAATG | 6 cut(s) | 1803, 1874, 2125, 2594, 3062, 3083 |
| BsrFI | RCCGGY | 1 cut(s) | 1026 |
| BssAI | RCCGGY | 1 cut(s) | 1026 |
| BssECI | CCNNGG | 7 cut(s) | 834, 1325, 1718, 1981, 2974, 3436, 3714 |
| BssT1I | CCWWGG | 5 cut(s) | 834, 1325, 2974, 3436, 3714 |
| Bst2UI | CCWGG | 5 cut(s) | 119, 1982, 2490, 3600, 3833 |
| Bst6I | CTCTTC | 8 cut(s) | 109, 337, 371, 474, 1803, 3516, 3618, 3637 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1447, 1873 |
| BstC8I | GCNNGC | 7 cut(s) | 45, 751, 1602, 1874, 2172, 2899, 3330 |
| BstDSI | CCRYGG | 1 cut(s) | 2974 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 875 |
| BstF5I | GGATG | 7 cut(s) | 200, 979, 1139, 1183, 2547, 2934, 3795 |
| BstHHI | GCGC | 2 cut(s) | 3829, 3869 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 623, 1447, 1873, 2176, 3779, 3833, 3866, 3881, 3890 |
| BstNI | CCWGG | 5 cut(s) | 119, 1982, 2490, 3600, 3833 |
| BstNSI | RCATGY | 9 cut(s) | 753, 1450, 1876, 2716, 2901, 3112, 3544, 3628, 3656 |
| BstSCI | CCNGG | 7 cut(s) | 117, 1717, 1980, 2488, 2725, 3598, 3831 |
| BstSFI | CTRYAG | 6 cut(s) | 1439, 2280, 2474, 3099, 3383, 4111 |
| BstSLI | GKGCMC | 1 cut(s) | 3537 |
| BstV1I | GCAGC | 9 cut(s) | 98, 941, 1130, 1250, 1425, 2953, 3769, 3902, 3962 |
| BstV2I | GAAGAC | 1 cut(s) | 504 |
| BstX2I | RGATCY | 6 cut(s) | 25, 1577, 3133, 3432, 3979, 4107 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2646 |
| BstYI | RGATCY | 6 cut(s) | 25, 1577, 3133, 3432, 3979, 4107 |
| Bsu15I | ATCGAT | 2 cut(s) | 1341, 2886 |
| Bsu36I | CCTNAGG | 1 cut(s) | 4016 |
| BsuI | GTATCC | 1 cut(s) | 1762 |
| BsuRI | GGCC | 5 cut(s) | 833, 2379, 3007, 3836, 4095 |
| BsuTUI | ATCGAT | 2 cut(s) | 1341, 2886 |
| BtgI | CCRYGG | 1 cut(s) | 2974 |
| BtsCI | GGATG | 7 cut(s) | 200, 979, 1139, 1183, 2547, 2934, 3795 |
| BtsI | GCAGTG | 4 cut(s) | 1037, 1358, 2186, 4004 |
| BtsIMutI | CAGTG | 9 cut(s) | 557, 1037, 1358, 1464, 2013, 2046, 2186, 3325, 4004 |
| BveI | ACCTGC | 4 cut(s) | 1493, 1930, 2669, 3679 |
| Cac8I | GCNNGC | 7 cut(s) | 45, 751, 1602, 1874, 2172, 2899, 3330 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1135, 1424, 3391 |
| CciI | TCATGA | 2 cut(s) | 3238, 3738 |
| CfoI | GCGC | 2 cut(s) | 3829, 3869 |
| Cfr10I | RCCGGY | 1 cut(s) | 1026 |
| Cfr13I | GGNCC | 4 cut(s) | 831, 1567, 1813, 2377 |
| ClaI | ATCGAT | 2 cut(s) | 1341, 2886 |
| Csp6I | GTAC | 3 cut(s) | 1822, 3221, 4081 |
| CviQI | GTAC | 3 cut(s) | 1822, 3221, 4081 |
| DraI | TTTAAA | 1 cut(s) | 1065 |
| EaeI | YGGCCR | 3 cut(s) | 3005, 3834, 4093 |
| Eam1104I | CTCTTC | 8 cut(s) | 109, 337, 371, 474, 1803, 3516, 3618, 3637 |
| EarI | CTCTTC | 8 cut(s) | 109, 337, 371, 474, 1803, 3516, 3618, 3637 |
| Ecl136II | GAGCTC | 2 cut(s) | 259, 3773 |
| Eco130I | CCWWGG | 5 cut(s) | 834, 1325, 2974, 3436, 3714 |
| Eco24I | GRGCYC | 3 cut(s) | 261, 1389, 3775 |
| Eco31I | GGTCTC | 1 cut(s) | 3183 |
| Eco32I | GATATC | 3 cut(s) | 1339, 3236, 3970 |
| Eco47I | GGWCC | 2 cut(s) | 1567, 1813 |
| Eco53kI | GAGCTC | 2 cut(s) | 259, 3773 |
| Eco57I | CTGAAG | 3 cut(s) | 395, 581, 3413 |
| Eco81I | CCTNAGG | 1 cut(s) | 4016 |
| Eco88I | CYCGRG | 1 cut(s) | 3186 |
| EcoICRI | GAGCTC | 2 cut(s) | 259, 3773 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 875 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1813 |
| EcoRI | GAATTC | 2 cut(s) | 1688, 2229 |
| EcoRII | CCWGG | 5 cut(s) | 117, 1980, 2488, 3598, 3831 |
| EcoRV | GATATC | 3 cut(s) | 1339, 3236, 3970 |
| EcoT14I | CCWWGG | 5 cut(s) | 834, 1325, 2974, 3436, 3714 |
| EcoT22I | ATGCAT | 2 cut(s) | 1874, 3654 |
| EcoT38I | GRGCYC | 3 cut(s) | 261, 1389, 3775 |
| ErhI | CCWWGG | 5 cut(s) | 834, 1325, 2974, 3436, 3714 |
| Esp3I | CGTCTC | 1 cut(s) | 4080 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 4049, 4081, 4143 |
| FaqI | GGGAC | 4 cut(s) | 1125, 2081, 2206, 3892 |
| FbaI | TGATCA | 2 cut(s) | 390, 3582 |
| FblI | GTMKAC | 1 cut(s) | 2473 |
| FokI | GGATG | 7 cut(s) | 187, 986, 1126, 1190, 2554, 2921, 3802 |
| FriOI | GRGCYC | 3 cut(s) | 261, 1389, 3775 |
| FspBI | CTAG | 7 cut(s) | 1583, 2100, 2393, 2526, 2534, 3573, 3779 |
| FspI | TGCGCA | 1 cut(s) | 3828 |
| GlaI | GCGC | 2 cut(s) | 3828, 3868 |
| GsaI | CCCAGC | 2 cut(s) | 2378, 3789 |
| GsuI | CTGGAG | 2 cut(s) | 1802, 2167 |
| HaeIII | GGCC | 5 cut(s) | 833, 2379, 3007, 3836, 4095 |
| HapII | CCGG | 3 cut(s) | 1027, 1718, 2726 |
| HhaI | GCGC | 2 cut(s) | 3829, 3869 |
| Hin6I | GCGC | 2 cut(s) | 3827, 3867 |
| HinP1I | GCGC | 2 cut(s) | 3827, 3867 |
| HincII | GTYRAC | 2 cut(s) | 570, 1993 |
| HindII | GTYRAC | 2 cut(s) | 570, 1993 |
| HindIII | AAGCTT | 1 cut(s) | 1553 |
| HpaII | CCGG | 3 cut(s) | 1027, 1718, 2726 |
| HphI | GGTGA | 8 cut(s) | 683, 2051, 2378, 2974, 3470, 3577, 3806, 4087 |
| Hpy99I | CGWCG | 1 cut(s) | 2277 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 623, 1447, 1873, 2176, 3779, 3833, 3866, 3881, 3890 |
| HspAI | GCGC | 2 cut(s) | 3827, 3867 |
| KpnI | GGTACC | 1 cut(s) | 4084 |
| Ksp22I | TGATCA | 2 cut(s) | 390, 3582 |
| LguI | GCTCTTC | 1 cut(s) | 3618 |
| Lsp1109I | GCAGC | 9 cut(s) | 98, 941, 1130, 1250, 1425, 2953, 3769, 3902, 3962 |
| MaeI | CTAG | 7 cut(s) | 1583, 2100, 2393, 2526, 2534, 3573, 3779 |
| MbiI | CCGCTC | 1 cut(s) | 4024 |
| MfeI | CAATTG | 2 cut(s) | 215, 3915 |
| MflI | RGATCY | 6 cut(s) | 25, 1577, 3133, 3432, 3979, 4107 |
| MhlI | GDGCHC | 7 cut(s) | 261, 769, 1389, 1899, 3537, 3775, 4138 |
| MlsI | TGGCCA | 1 cut(s) | 4095 |
| MluNI | TGGCCA | 1 cut(s) | 4095 |
| MlyI | GAGTC | 9 cut(s) | 494, 575, 924, 1150, 2103, 2488, 2940, 3456, 3612 |
| MmeI | TCCRAC | 4 cut(s) | 286, 412, 1597, 3883 |
| Mox20I | TGGCCA | 1 cut(s) | 4095 |
| Mph1103I | ATGCAT | 2 cut(s) | 1874, 3654 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2497 |
| MscI | TGGCCA | 1 cut(s) | 4095 |
| MseI | TTAA | 7 cut(s) | 459, 818, 1064, 1187, 2312, 2550, 2654 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1728, 2644, 2984, 3590, 3997 |
| Msp20I | TGGCCA | 1 cut(s) | 4095 |
| MspA1I | CMGCKG | 2 cut(s) | 932, 3073 |
| MspI | CCGG | 3 cut(s) | 1027, 1718, 2726 |
| MspR9I | CCNGG | 7 cut(s) | 119, 1719, 1982, 2490, 2727, 3600, 3833 |
| MunI | CAATTG | 2 cut(s) | 215, 3915 |
| Mva1269I | GAATGC | 4 cut(s) | 1237, 1798, 2672, 3613 |
| MvaI | CCWGG | 5 cut(s) | 119, 1982, 2490, 3600, 3833 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 623, 1447, 1873, 2176, 3779, 3833, 3866, 3881, 3890 |
| NciI | CCSGG | 2 cut(s) | 1719, 2727 |
| NcoI | CCATGG | 1 cut(s) | 2974 |
| NlaIV | GGNNCC | 5 cut(s) | 2217, 3135, 3597, 3720, 4082 |
| NmuCI | GTSAC | 6 cut(s) | 792, 1072, 1885, 2528, 2986, 3499 |
| NsbI | TGCGCA | 1 cut(s) | 3828 |
| NsiI | ATGCAT | 2 cut(s) | 1874, 3654 |
| NspI | RCATGY | 9 cut(s) | 753, 1450, 1876, 2716, 2901, 3112, 3544, 3628, 3656 |
| OliI | CACNNNNGTG | 1 cut(s) | 3997 |
| PaeI | GCATGC | 3 cut(s) | 753, 1876, 2901 |
| PagI | TCATGA | 2 cut(s) | 3238, 3738 |
| PciI | ACATGT | 3 cut(s) | 2712, 3540, 3624 |
| PciSI | GCTCTTC | 1 cut(s) | 3618 |
| PctI | GAATGC | 4 cut(s) | 1237, 1798, 2672, 3613 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2497 |
| PflFI | GACNNNGTC | 1 cut(s) | 1913 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 955, 2181, 2489, 3350 |
| PfoI | TCCNGGA | 2 cut(s) | 2488, 3598 |
| PleI | GAGTC | 9 cut(s) | 494, 575, 923, 1150, 2102, 2487, 2939, 3456, 3612 |
| PpsI | GAGTC | 9 cut(s) | 494, 575, 923, 1150, 2102, 2487, 2939, 3456, 3612 |
| PpuMI | RGGWCCY | 1 cut(s) | 1813 |
| PscI | ACATGT | 3 cut(s) | 2712, 3540, 3624 |
| PsiI | TTATAA | 1 cut(s) | 2948 |
| Psp124BI | GAGCTC | 2 cut(s) | 261, 3775 |
| Psp5II | RGGWCCY | 1 cut(s) | 1813 |
| Psp6I | CCWGG | 5 cut(s) | 117, 1980, 2488, 3598, 3831 |
| PspFI | CCCAGC | 2 cut(s) | 2374, 3785 |
| PspGI | CCWGG | 5 cut(s) | 117, 1980, 2488, 3598, 3831 |
| PspN4I | GGNNCC | 5 cut(s) | 2217, 3135, 3597, 3720, 4082 |
| PspPI | GGNCC | 4 cut(s) | 831, 1567, 1813, 2377 |
| PspPPI | RGGWCCY | 1 cut(s) | 1813 |
| PstI | CTGCAG | 3 cut(s) | 1443, 3103, 3387 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1135, 1424, 3391 |
| PsuI | RGATCY | 6 cut(s) | 25, 1577, 3133, 3432, 3979, 4107 |
| PsyI | GACNNNGTC | 1 cut(s) | 1913 |
| PvuII | CAGCTG | 2 cut(s) | 932, 3073 |
| RsaI | GTAC | 3 cut(s) | 1823, 3222, 4082 |
| RsaNI | GTAC | 3 cut(s) | 1822, 3221, 4081 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1728, 2644, 2984, 3590, 3997 |
| SacI | GAGCTC | 2 cut(s) | 261, 3775 |
| SapI | GCTCTTC | 1 cut(s) | 3618 |
| SaqAI | TTAA | 7 cut(s) | 459, 818, 1064, 1187, 2312, 2550, 2654 |
| Sau96I | GGNCC | 4 cut(s) | 831, 1567, 1813, 2377 |
| ScaI | AGTACT | 2 cut(s) | 1823, 3222 |
| SchI | GAGTC | 9 cut(s) | 494, 575, 924, 1150, 2103, 2488, 2940, 3456, 3612 |
| ScrFI | CCNGG | 7 cut(s) | 119, 1719, 1982, 2490, 2727, 3600, 3833 |
| SduI | GDGCHC | 7 cut(s) | 261, 769, 1389, 1899, 3537, 3775, 4138 |
| SfcI | CTRYAG | 6 cut(s) | 1439, 2280, 2474, 3099, 3383, 4111 |
| SinI | GGWCC | 2 cut(s) | 1567, 1813 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1728, 2644, 2984, 3590, 3997 |
| SmlI | CTYRAG | 6 cut(s) | 290, 1240, 2807, 3258, 3761, 3961 |
| SmoI | CTYRAG | 6 cut(s) | 290, 1240, 2807, 3258, 3761, 3961 |
| SphI | GCATGC | 3 cut(s) | 753, 1876, 2901 |
| SsiI | CCGC | 8 cut(s) | 160, 617, 814, 1604, 3004, 3229, 3481, 4024 |
| SspI | AATATT | 2 cut(s) | 576, 1530 |
| SspMI | CTAG | 7 cut(s) | 1583, 2100, 2393, 2526, 2534, 3573, 3779 |
| SstI | GAGCTC | 2 cut(s) | 261, 3775 |
| StyD4I | CCNGG | 7 cut(s) | 117, 1717, 1980, 2488, 2725, 3598, 3831 |
| StyI | CCWWGG | 5 cut(s) | 834, 1325, 2974, 3436, 3714 |
| TaqII | GACCGA | 2 cut(s) | 2223, 2269 |
| TatI | WGTACW | 2 cut(s) | 1821, 3220 |
| TauI | GCSGC | 1 cut(s) | 3007 |
| Tru1I | TTAA | 7 cut(s) | 459, 818, 1064, 1187, 2312, 2550, 2654 |
| Tru9I | TTAA | 7 cut(s) | 459, 818, 1064, 1187, 2312, 2550, 2654 |
| TscAI | CASTG | 9 cut(s) | 564, 1044, 1365, 1464, 2013, 2046, 2186, 3325, 4004 |
| TseFI | GTSAC | 6 cut(s) | 792, 1072, 1885, 2528, 2986, 3499 |
| TseI | GCWGC | 9 cut(s) | 111, 929, 1118, 1263, 1438, 2941, 3782, 3890, 3950 |
| Tsp45I | GTSAC | 6 cut(s) | 792, 1072, 1885, 2528, 2986, 3499 |
| TspGWI | ACGGA | 1 cut(s) | 2208 |
| TspRI | CASTG | 9 cut(s) | 564, 1044, 1365, 1464, 2013, 2046, 2186, 3325, 4004 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1913 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 955, 2181, 2489, 3350 |
| VpaK11BI | GGWCC | 2 cut(s) | 1567, 1813 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 875 |
| XapI | RAATTY | 9 cut(s) | 369, 723, 883, 952, 1366, 1688, 1846, 2229, 2457 |
| XceI | RCATGY | 9 cut(s) | 753, 1450, 1876, 2716, 2901, 3112, 3544, 3628, 3656 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2178 |
| XmiI | GTMKAC | 1 cut(s) | 2473 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2497 |
| XspI | CTAG | 7 cut(s) | 1583, 2100, 2393, 2526, 2534, 3573, 3779 |
| ZrmI | AGTACT | 2 cut(s) | 1823, 3222 |
| Zsp2I | ATGCAT | 2 cut(s) | 1874, 3654 |