pycom03g14240

Tornado 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
15559951 .. 15564473
4523 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g14240.1

Sequence Viewer

Length: 4206 bp
ATGATCGATCCTGATATTATCATCACAATTTCACAAAACAAATCTTTGGACCTTTTGTTTCGTTTAGCAATGGCAACGAGCCAGAACAATCTCAAGGATCTCCAATGGCTTCTGGATGCCATCAAATCCGAAAGCCTCAGCCTCCACAACATCTCCTTCTACCTCTCTCAACCCTCTTCCTTCGGCTTCCAGGAAACCGAAAACTCCGTCAACATCAACGTTTCGAACGACAGCCTCTCTTTCTTCTCCCACTTCCTCACAGCTTTAGCAACATCCAAAACCAACCAACTTCTGATGAACTTGGAGTTTCACCAGGTTCAGTGGGACGTGCAGCAGCTTCGCCATCTTTCGGCGTTGCTTGAGAGTAGTTCGAGCATCAAGCAAGTGGGGTTTCGGAGAAACAGATTTGACAAACAATGCTTGGCTGAGTTGTGTGAGATCGTGAAGAGGAATAGAGTGATCAAAGAGATTATGTTTTCGGAATCAGGTATCGGGTTTGCTGGAGCCGGGTTTCTTGCTTCTGCGCTTAAGGTCAATGAGAGCTTGGAGGAGTTGCAGATATGGGAAGACTCTATTGGGTCGAAAGGCGCAGAGGAGCTCTCGAAGATGATTGAAGTGAACTCAACACTGAAGGTGTTGACAATATTTGACTCGAATTCGATCACTGCAACTCCACTTATTTCTGCAGTTTTAGCAAGGAATAGGTCTATGGAAGTCCATGTTTGGAGTGGAGAAAACGGAGAGAGAAGCTCGAAGGTGGTTGAGTTTCTACCCGAAAACAGCACGCTTAGGATTTACAGGCTCGACCTTTCGGGCGCTTGCAGGGTTGCCTGTGCTCTCGGGTGGAACTCAACGGTTAAGTCCCTCGACCTTACTGGAGTGCGGTTGAAATCAAGGTGGGCTAAGGAGTTTCGGTGGGTTTTGGAACAGAACCAGACCCTCAAAGAGGTAAACTTGTCTAAAACTTGGCTGAAAGATAAGGGGGTTGTGTATGTAGCCGCTGGACTCTTCAAGAACCAGAGCTTGGACTGCTTGTGTTTAGATGGGAACGCGTTTGGAGGTATCGGAGTTGAGCATTTACTCTGCCCTTTGAGCAGGTTCTCTGCCTTGCAATATCAAGCAAACATTACTTTAAAATCGGTAACACTTGGAGGTGGAAGAACCAAGATTGGAAGGGAGGGGCTTGCAGCAATTTTACAGATGCTGACAACTAATGAAAGTTTGACGCGGTTAGGTATATACGATGATGAGAGTTTAAGGCCCGATGATTTTGTTAAACTCTTCAAAAGCTTGGAGAAGAATGCCAGCTTGAGACACTTATCATTACAGGGCTGCAAAGGCGTTCAAGGAGAGCAGGTTCTGCAGGCAATCATGGAGACATTGCAGGTAAATCCTTGGCTTGAAAATATTGATCTTGCAAGAACGCCGCTGCAGAATTCAGGAAAGACGGATGGGGTCTATCAAAGACTCGGGCAGAATGGGAAGCCTGAACCGGAAATGGATTTGCTTAAAGACATGCCACTTACAGTACCAAAAAGTTGTAGAGTGTTCTTCTGTGGGCAAGAATATGCAGGTAAGACTACATTGTGCAATTCCATATTGCAGAGTGTCTCCTCTTCAAAGGTTCCGTATGTGGACCAAGTACGATCTTTAGTGAACCCGGTTGAGCAAGCTGTTCGAACAGTTGGAATGAAGATTAAGACTTTCAAAGATGATGACAGCACAAAGATTTCAATATGGAATCTTGCTGGTCAGCATGAATTCTATTCTCTCCATGATCTCATGTTCCCGGGGCATGGCAGTGCGTCATTCTTTGTCATCGTATCCAGTTTATTCAGGAAAACGAACAACAGAGAACCGAAAAACTCAATGGAGATAGAAGAGGACCTCCAGTACTGGCTCAGGTTCATAGTCTCAAACTCTAGAAGAGCAGTGCAGCAATGCATGCTACCAAATGTCACGGTTGTACTCACGCACTATGACAAAATCAATCAACCGTCACAAAACTTACAGGTTGCAGTGAACTCGATTCAAAAATTGCGAGACAAGTTCCAGGGATTTGTTGACTTCTATCCAACAGTGTTCACAATTGATGCAAGATCATCGGCATCAGTGAGTAAGCTCACTCATCACCTTCTAAAGACAAGCAAGACAGTTCTCCAAAGAGTCCCAAGAATCTATCAGCTGTGCAATGATCTGACACAAATATTATCAGATTGGAGATCAGAGAACTACAACAAGCCAGCGATGCAGTGGAAGGAGTTCAACGAGCTATGCCAAGTTAAGGTTCCATCATTAAGAGTCCGATCAAGACACGATAACAAAGAGAAGTTGGAAATGAGGAGGCGGGTTGTTGCTACTTGCCTTCACCACATAGGAGAGGTAATTTATTTTGATGAGCTCGGGTTTCTGATCTTAGATTGTGAGTGGTTCTGCGGCGAGGTGCTTGGCCAACTAATAAGACTAGATTTAAGAAGTCGAAGCTCCAATGAGAACAATGGATTCATCAGCAAGAAAGATTTGGAGAAGATTCTAAGAGGAAGCTTGCAGAGTCCAATTCCTGGAGTGGGTACGAAGGTATTTGAGAACTTGGATGCAACTGATCTTGTGAGAATGATGCTTAAACTGGAACTATGTTACGAACAAGACCCTTCAGATCGTAATTCTTTGCTGTTGATCCCCTCCATTCTTGAAGAAGGAAGAGGAAAGCCACAACGATGGCAGTTAAGCAGACCGGAGTCCCTTTATGCCGGGAGGCATCTTGAATGCGATGATTCCAGCCACATGTTCCTCACACCCGGCTTCTTTCCTCGATTACAGGTGCATCTGCATAACAGAATCATGGCCTTGAAAAACCAACATGGAGCGACTTACAGCCTTGAGAAGTACCTGATCTCGATAACTATCAATGGAATCTATATCAGAGTAGAACTGGGAGGACAGCTGGGTTACTACATCGATATCCTCGCATGCTCCACCAAGAACCTGACAGAAACCCTGAGGGTTATCCAGCAGCTTATAATTCCAGCAATTCATAGCCTCTGTAACGGTATCACCTTGACTGAAAATGTCATACGGCCAGAATGCGTGCAAAATCTCACTCCTCCAAGATACAGGAAGACGCAATTTGTGCCGTTGCAACAATTAAAACAGGCATTACTTTCTGTTCCTGCAGACAGCATGTATGATTACCAGCATACCTGGGATCGAATCTCGGACTCCGGAAGACAAATTCTAGGACCTGGTTTTGATCTGGCCCGAGACCTCCTATCAGATGATGACTTCCGTGAAGTGCTCCATCGGAGATATCATGACCTATACAACCTTGCTCAGGAACTGCAAATCCCACCTGAGAGCGACCCGGAGAACACATTATCCACAAGTGACGAGCCTGACAAAGTTGATCCAACCTTCGGTGGAATTGCCAAGGGGGTTGAAGCGGTTTTGCAGAGGCTGAAGATCATTGAGCAAGAGATCAGAGACTTGAAGCAAGAGATCCAAGGGCTGAGATATTACGAGCACAGACTCCTTGCGGAGCTTCATCGCAAAGTGAATTACCTTGTGACATACAATGTCCAAATTGAAGAGAGGAAAGTGCCGAATATGTTCTACTTTGTTAGAACAGAAAACTACTCGAGGAGATTGATCACCAACATGGTTCCCGGCATGAATGCTATTCGACTGCACATGTTATGTGAATTTCGACGAGAAATGCATGTTGTTGAAGATCAAATGGGGTGTGAACTGATGCAGGTTGACAACAGGACCGTGAAGTCTTTGGCACCGTACACCACAAAGTTCATGAAACTGCTTACATTTGCTCTCAAGATAGGAGCACATCTAGCCGCTGGCATGGGAGAAATGATACCGGATTTGAGCAGGGAAGTCGCTCACCTGGCTGATTCTTCCCTCCTTTATGGAGCCGCAGGGGCAGTTGCTGCCGGCGCAGTGGGAGCTGCAGCAATTGGGCAGGGAAGGAACAGAAGTAAGGCTGCAGAAAGCTCAAGAGACATCCAGCAAGATCAAAGAACAGCACAGCAATGGGTTCTGGATTTCCTAAGGGACCGGAAATGCTCAACCGGAAAGGATATTGCCGAGAAGTTTGGTTTGTGGAGAGTGCGGTACAGAGACGATGGTCAGATTGCATGGATCTGCAGGAGGCATATTAACCTCAGAACACATGAAATAATTGAAGTGCCACTTTGA

Protein Analysis

1402

Amino Acids

159.24

Weight (kDa)

8.2

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Roc PF08477 515 - 641 7.2e-06 Ras of Complex, Roc, domain of DAPkinase
COR-A PF16095 743 - 897 3.6e-09 C-terminal of Roc, COR-A domain
COR-B PF25497 919 - 1061 1.1e-13 C-terminal of Roc, COR-B domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015957)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55540 AT5G55540
fragaria_vesca FvH4_3g23950
malus_domestica MD03G1189500.v1.1
prunus_persica Prupe.4G231800_v2.0.a1
pyrus_communis pycom03g14240
rosa_chinensis RchiOBHm_Chr5g0042451
rosa_laevigata RLG00000034127
rosa_multiflora Rmu_sc0002779.1_g000005 Rmu_sc0016438.1_g000001
rosa_roxburghii Rroxscaffold_1G00038240
rosa_rugosa Rorug05G0200300
rosa_samantha Rh5AG286400 Rh5CG323200
rosa_wichuraiana Rw5G026610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3020
AasI GACNNNNNNGTC 1 cut(s) 3772
Acc36I ACCTGC 5 cut(s) 1086, 1345, 1375, 1562, 3742
AccB1I GGYRCC 1 cut(s) 3781
AccB7I CCANNNNNTGG 2 cut(s) 1024, 2561
AccII CGCG 2 cut(s) 1052, 1228
AccIII TCCGGA 1 cut(s) 3221
AclI AACGTT 1 cut(s) 219
AclWI GGATC 7 cut(s) 2, 105, 2671, 3213, 3398, 3490, 4157
AcoI YGGCCR 2 cut(s) 2449, 3077
AcsI RAATTY 5 cut(s) 655, 1435, 1760, 3231, 3698
AcuI CTGAAG 3 cut(s) 650, 2637, 3476
AfaI GTAC 8 cut(s) 1530, 1644, 1895, 1968, 2572, 2888, 3788, 4124
AfiI CCNNNNNNNGG 9 cut(s) 349, 946, 1024, 1796, 2284, 2561, 2567, 3331, 3413
AflII CTTAAG 1 cut(s) 527
AflIII ACRYGT 3 cut(s) 1050, 2784, 3687
AjiI CACGTC 1 cut(s) 328
AjnI CCWGG 7 cut(s) 189, 312, 2052, 2560, 3200, 3241, 3894
AjuI GAANNNNNNNTTGG 6 cut(s) 558, 590, 1007, 1039, 2271, 2303
AloI GAACNNNNNNTCC 6 cut(s) 1341, 1373, 3327, 3359, 3359, 3391
Alw21I GWGCWC 6 cut(s) 600, 838, 2403, 3297, 3522, 3838
Alw26I GTCTC 9 cut(s) 1306, 1370, 1615, 1918, 2037, 3255, 3474, 4002, 4122
AlwI GGATC 7 cut(s) 2, 105, 2671, 3213, 3398, 3490, 4157
AlwNI CAGNNNCTG 5 cut(s) 1204, 1360, 3337, 3454, 3938
Ama87I CYCGRG 6 cut(s) 839, 1469, 1789, 2402, 3258, 3634
Aor13HI TCCGGA 1 cut(s) 3221
AoxI GGCC 5 cut(s) 1259, 2449, 2844, 3077, 3255
ApoI RAATTY 5 cut(s) 655, 1435, 1760, 3231, 3698
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
Asp700I GAANNNNTTC 2 cut(s) 2261, 3605
AspLEI GCGC 4 cut(s) 526, 590, 818, 3947
AspS9I GGNCC 8 cut(s) 49, 1260, 1636, 1885, 3239, 3256, 3765, 4063
AsuC2I CCSGG 8 cut(s) 508, 1661, 1790, 1791, 2752, 2799, 3362, 3663
AsuHPI GGTGA 6 cut(s) 302, 2123, 2360, 3046, 3640, 3884
AsuII TTCGAA 2 cut(s) 224, 1678
AvaI CYCGRG 6 cut(s) 839, 1469, 1789, 2402, 3258, 3634
AvaII GGWCC 6 cut(s) 49, 1636, 1885, 3239, 3765, 4063
AxyI CCTNAGG 2 cut(s) 2999, 4058
BaeI ACNNNNGTAYC 2 cut(s) 2562, 2595
BalI TGGCCA 1 cut(s) 2451
BanI GGYRCC 1 cut(s) 3781
BanII GRGCYC 2 cut(s) 600, 2403
BbsI GAAGAC 3 cut(s) 573, 3125, 3232
Bbv12I GWGCWC 6 cut(s) 600, 838, 2403, 3297, 3522, 3838
BbvCI CCTCAGC 1 cut(s) 137
BccI CCATC 8 cut(s) 128, 351, 1037, 1445, 2299, 2712, 3306, 4127
BceAI ACGGC 2 cut(s) 3092, 3118
BciT130I CCWGG 7 cut(s) 191, 314, 2054, 2562, 3202, 3243, 3896
BciVI GTATCC 1 cut(s) 1834
BclI TGATCA 2 cut(s) 459, 3645
BcnI CCSGG 8 cut(s) 508, 1661, 1790, 1791, 2752, 2799, 3362, 3663
BcoDI GTCTC 9 cut(s) 1306, 1370, 1615, 1918, 2037, 3255, 3474, 4002, 4122
BfaI CTAG 4 cut(s) 1923, 2465, 3236, 3842
BfmI CTRYAG 7 cut(s) 684, 1361, 1430, 3171, 3957, 3993, 4153
BfoI RGCGCY 1 cut(s) 819
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 5 cut(s) 1086, 1345, 1375, 1562, 3742
BfuI GTATCC 1 cut(s) 1834
BglI GCCNNNNNGGC 1 cut(s) 3929
BmcAI AGTACT 1 cut(s) 1895
Bme18I GGWCC 6 cut(s) 49, 1636, 1885, 3239, 3765, 4063
BmeT110I CYCGRG 6 cut(s) 839, 1469, 1789, 2402, 3258, 3634
BmgBI CACGTC 1 cut(s) 328
BmgT120I GGNCC 8 cut(s) 49, 1260, 1636, 1885, 3239, 3256, 3765, 4063
BmiI GGNNCC 7 cut(s) 505, 1626, 2289, 3660, 3783, 3922, 4064
BmrI ACTGGG 1 cut(s) 2942
BmuI ACTGGG 1 cut(s) 2942
BoxI GACNNNNGTC 2 cut(s) 2737, 4134
BpiI GAAGAC 3 cut(s) 573, 3125, 3232
BplI GAGNNNNNCTC 4 cut(s) 584, 616, 734, 766
BpmI CTGGAG 4 cut(s) 522, 897, 1874, 2583
Bpu10I CCTNAGC 5 cut(s) 137, 788, 903, 1901, 3330
Bpu14I TTCGAA 2 cut(s) 224, 1678
BpuEI CTTGAG 6 cut(s) 77, 380, 1330, 2900, 3809, 3988
BpuMI CCSGG 8 cut(s) 508, 1661, 1790, 1791, 2752, 2799, 3362, 3663
Bsa29I ATCGAT 2 cut(s) 6, 2958
BsaBI GATNNNNATC 1 cut(s) 2903
BsaI GGTCTC 1 cut(s) 3255
BsaJI CCNNGG 7 cut(s) 1394, 1789, 1790, 2053, 3201, 3426, 3499
BsaWI WCCGGW 6 cut(s) 1492, 2734, 3221, 3868, 4065, 4079
BsaXI ACNNNNNCTCC 8 cut(s) 137, 167, 655, 685, 899, 929, 1341, 1371
Bsc4I CCNNNNNNNGG 9 cut(s) 349, 946, 1024, 1796, 2284, 2561, 2567, 3331, 3413
Bse118I RCCGGY 1 cut(s) 3941
Bse1I ACTGG 6 cut(s) 880, 1827, 1891, 1901, 2631, 2937
Bse21I CCTNAGG 2 cut(s) 2999, 4058
Bse3DI GCAATG 5 cut(s) 75, 1379, 1946, 2197, 4046
Bse8I GATNNNNATC 1 cut(s) 2903
BseAI TCCGGA 1 cut(s) 3221
BseBI CCWGG 7 cut(s) 191, 314, 2054, 2562, 3202, 3243, 3896
BseCI ATCGAT 2 cut(s) 6, 2958
BseDI CCNNGG 7 cut(s) 1394, 1789, 1790, 2053, 3201, 3426, 3499
BseGI GGATG 5 cut(s) 121, 272, 1456, 2599, 4011
BseJI GATNNNNATC 1 cut(s) 2903
BseLI CCNNNNNNNGG 9 cut(s) 349, 946, 1024, 1796, 2284, 2561, 2567, 3331, 3413
BseMI GCAATG 5 cut(s) 75, 1379, 1946, 2197, 4046
BseMII CTCAG 8 cut(s) 151, 417, 1915, 2990, 3342, 3344, 3497, 4186
BseNI ACTGG 6 cut(s) 880, 1827, 1891, 1901, 2631, 2937
BseRI GAGGAG 6 cut(s) 563, 608, 1603, 2356, 3093, 3652
BseYI CCCAGC 1 cut(s) 2944
BsgI GTGCAG 3 cut(s) 350, 1955, 3668
Bsh1236I CGCG 2 cut(s) 1052, 1228
BshFI GGCC 5 cut(s) 1261, 2451, 2846, 3079, 3257
BshNI GGYRCC 1 cut(s) 3781
BshVI ATCGAT 2 cut(s) 6, 2958
BsiHKAI GWGCWC 6 cut(s) 600, 838, 2403, 3297, 3522, 3838
BsiHKCI CYCGRG 6 cut(s) 839, 1469, 1789, 2402, 3258, 3634
BslFI GGGAC 5 cut(s) 338, 847, 2153, 2725, 4076
BslI CCNNNNNNNGG 9 cut(s) 349, 946, 1024, 1796, 2284, 2561, 2567, 3331, 3413
BsmAI GTCTC 9 cut(s) 1306, 1370, 1615, 1918, 2037, 3255, 3474, 4002, 4122
BsmBI CGTCTC 1 cut(s) 4122
BsmFI GGGAC 5 cut(s) 338, 847, 2153, 2725, 4076
BsmI GAATGC 4 cut(s) 1306, 2771, 3089, 3676
BsnI GGCC 5 cut(s) 1261, 2451, 2846, 3079, 3257
Bso31I GGTCTC 1 cut(s) 3255
BsoBI CYCGRG 6 cut(s) 839, 1469, 1789, 2402, 3258, 3634
Bsp119I TTCGAA 2 cut(s) 224, 1678
Bsp1286I GDGCHC 6 cut(s) 600, 838, 2403, 3297, 3522, 3838
Bsp13I TCCGGA 1 cut(s) 3221
BspANI GGCC 5 cut(s) 1261, 2451, 2846, 3079, 3257
BspCNI CTCAG 8 cut(s) 150, 418, 1914, 2991, 3343, 3343, 3498, 4185
BspDI ATCGAT 2 cut(s) 6, 2958
BspEI TCCGGA 1 cut(s) 3221
BspFNI CGCG 2 cut(s) 1052, 1228
BspHI TCATGA 2 cut(s) 3310, 3801
BspLI GGNNCC 7 cut(s) 505, 1626, 2289, 3660, 3783, 3922, 4064
BspMAI CTGCAG 7 cut(s) 688, 1365, 1434, 3175, 3961, 3997, 4157
BspMI ACCTGC 5 cut(s) 1086, 1345, 1375, 1562, 3742
BspPI GGATC 7 cut(s) 2, 105, 2671, 3213, 3398, 3490, 4157
BspQI GCTCTTC 1 cut(s) 1921
BspT104I TTCGAA 2 cut(s) 224, 1678
BspT107I GGYRCC 1 cut(s) 3781
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 3255
BsrDI GCAATG 5 cut(s) 75, 1379, 1946, 2197, 4046
BsrFI RCCGGY 1 cut(s) 3941
BsrI ACTGG 6 cut(s) 880, 1827, 1891, 1901, 2631, 2937
BssAI RCCGGY 1 cut(s) 3941
BssECI CCNNGG 7 cut(s) 1394, 1789, 1790, 2053, 3201, 3426, 3499
BssT1I CCWWGG 3 cut(s) 1394, 3426, 3499
Bst2UI CCWGG 7 cut(s) 191, 314, 2054, 2562, 3202, 3243, 3896
Bst6I CTCTTC 9 cut(s) 181, 440, 1013, 1286, 1621, 1875, 1921, 2695, 3579
BstAFI CTTAAG 1 cut(s) 527
BstAPI GCANNNNNTGC 4 cut(s) 1360, 1945, 3130, 3938
BstBI TTCGAA 2 cut(s) 224, 1678
BstENI CCTNNNNNAGG 2 cut(s) 944, 3329
BstF5I GGATG 5 cut(s) 121, 272, 1456, 2599, 4011
BstFNI CGCG 2 cut(s) 1052, 1228
BstH2I RGCGCY 1 cut(s) 819
BstHHI GCGC 4 cut(s) 526, 590, 818, 3947
BstMAI GTCTC 9 cut(s) 1306, 1370, 1615, 1918, 2037, 3255, 3474, 4002, 4122
BstNI CCWGG 7 cut(s) 191, 314, 2054, 2562, 3202, 3243, 3896
BstNSI RCATGY 7 cut(s) 1519, 1948, 2788, 2973, 3184, 3691, 3719
BstPAI GACNNNNGTC 2 cut(s) 2737, 4134
BstSFI CTRYAG 7 cut(s) 684, 1361, 1430, 3171, 3957, 3993, 4153
BstUI CGCG 2 cut(s) 1052, 1228
BstV2I GAAGAC 3 cut(s) 573, 3125, 3232
BstX2I RGATCY 3 cut(s) 97, 3495, 4149
BstXI CCANNNNNNTGG 1 cut(s) 2718
BstYI RGATCY 3 cut(s) 97, 3495, 4149
Bsu15I ATCGAT 2 cut(s) 6, 2958
Bsu36I CCTNAGG 2 cut(s) 2999, 4058
BsuI GTATCC 1 cut(s) 1834
BsuRI GGCC 5 cut(s) 1261, 2451, 2846, 3079, 3257
BsuTUI ATCGAT 2 cut(s) 6, 2958
BtgZI GCGATG 3 cut(s) 2261, 2784, 3527
BtrI CACGTC 1 cut(s) 328
BtsCI GGATG 5 cut(s) 121, 272, 1456, 2599, 4011
BtsI GCAGTG 6 cut(s) 663, 1807, 1938, 2025, 2258, 3954
BveI ACCTGC 5 cut(s) 1086, 1345, 1375, 1562, 3742
CaiI CAGNNNCTG 5 cut(s) 1204, 1360, 3337, 3454, 3938
CciI TCATGA 2 cut(s) 3310, 3801
CfoI GCGC 4 cut(s) 526, 590, 818, 3947
Cfr10I RCCGGY 1 cut(s) 3941
Cfr13I GGNCC 8 cut(s) 49, 1260, 1636, 1885, 3239, 3256, 3765, 4063
Cfr9I CCCGGG 1 cut(s) 1789
ClaI ATCGAT 2 cut(s) 6, 2958
CseI GACGC 3 cut(s) 1234, 1794, 3130
CsiI ACCWGGT 2 cut(s) 312, 3241
Csp6I GTAC 8 cut(s) 1529, 1643, 1894, 1967, 2571, 2887, 3787, 4123
CviQI GTAC 8 cut(s) 1529, 1643, 1894, 1967, 2571, 2887, 3787, 4123
DraI TTTAAA 1 cut(s) 1134
DrdI GACNNNNNNGTC 1 cut(s) 3772
DseDI GACNNNNNNGTC 1 cut(s) 3772
EaeI YGGCCR 2 cut(s) 2449, 3077
Eam1104I CTCTTC 9 cut(s) 181, 440, 1013, 1286, 1621, 1875, 1921, 2695, 3579
EarI CTCTTC 9 cut(s) 181, 440, 1013, 1286, 1621, 1875, 1921, 2695, 3579
Ecl136II GAGCTC 2 cut(s) 598, 2401
Eco130I CCWWGG 3 cut(s) 1394, 3426, 3499
Eco24I GRGCYC 2 cut(s) 600, 2403
Eco31I GGTCTC 1 cut(s) 3255
Eco32I GATATC 2 cut(s) 2962, 3308
Eco47I GGWCC 6 cut(s) 49, 1636, 1885, 3239, 3765, 4063
Eco53kI GAGCTC 2 cut(s) 598, 2401
Eco57I CTGAAG 3 cut(s) 650, 2637, 3476
Eco81I CCTNAGG 2 cut(s) 2999, 4058
Eco88I CYCGRG 6 cut(s) 839, 1469, 1789, 2402, 3258, 3634
EcoICRI GAGCTC 2 cut(s) 598, 2401
EcoNI CCTNNNNNAGG 2 cut(s) 944, 3329
EcoO109I RGGNCCY 2 cut(s) 1885, 3239
EcoRI GAATTC 3 cut(s) 655, 1435, 1760
EcoRII CCWGG 7 cut(s) 189, 312, 2052, 2560, 3200, 3241, 3894
EcoRV GATATC 2 cut(s) 2962, 3308
EcoT14I CCWWGG 3 cut(s) 1394, 3426, 3499
EcoT22I ATGCAT 2 cut(s) 1946, 3717
EcoT38I GRGCYC 2 cut(s) 600, 2403
ErhI CCWWGG 3 cut(s) 1394, 3426, 3499
Esp3I CGTCTC 1 cut(s) 4122
FalI AAGNNNNNCTT 1 cut(s) 4185
FaqI GGGAC 5 cut(s) 338, 847, 2153, 2725, 4076
FauI CCCGC 1 cut(s) 2340
FbaI TGATCA 2 cut(s) 459, 3645
FokI GGATG 5 cut(s) 128, 259, 1463, 2606, 3998
FriOI GRGCYC 2 cut(s) 600, 2403
FspBI CTAG 4 cut(s) 1923, 2465, 3236, 3842
GlaI GCGC 4 cut(s) 525, 589, 817, 3946
GsaI CCCAGC 1 cut(s) 2948
GsuI CTGGAG 4 cut(s) 522, 897, 1874, 2583
HaeII RGCGCY 1 cut(s) 819
HaeIII GGCC 5 cut(s) 1261, 2451, 2846, 3079, 3257
HgaI GACGC 3 cut(s) 1234, 1794, 3130
HhaI GCGC 4 cut(s) 526, 590, 818, 3947
Hin6I GCGC 4 cut(s) 524, 588, 816, 3945
HinP1I GCGC 4 cut(s) 524, 588, 816, 3945
HincII GTYRAC 4 cut(s) 211, 639, 2065, 3757
HindII GTYRAC 4 cut(s) 211, 639, 2065, 3757
HindIII AAGCTT 2 cut(s) 1288, 2542
HphI GGTGA 6 cut(s) 302, 2123, 2360, 3046, 3640, 3884
Hpy99I CGWCG 1 cut(s) 3708
HpyCH4IV ACGT 2 cut(s) 219, 327
HpySE526I ACGT 2 cut(s) 219, 327
HspAI GCGC 4 cut(s) 524, 588, 816, 3945
Kpn2I TCCGGA 1 cut(s) 3221
KroI GCCGGC 1 cut(s) 3941
KroNI GCCGGC 1 cut(s) 3943
Ksp22I TGATCA 2 cut(s) 459, 3645
LguI GCTCTTC 1 cut(s) 1921
MabI ACCWGGT 2 cut(s) 312, 3241
MaeI CTAG 4 cut(s) 1923, 2465, 3236, 3842
MaeII ACGT 2 cut(s) 219, 327
MaeIII GTNAC 8 cut(s) 1141, 1957, 1998, 2636, 2948, 3044, 3383, 3562
MfeI CAATTG 2 cut(s) 2088, 3963
MflI RGATCY 3 cut(s) 97, 3495, 4149
MhlI GDGCHC 6 cut(s) 600, 838, 2403, 3297, 3522, 3838
MlsI TGGCCA 1 cut(s) 2451
MluI ACGCGT 1 cut(s) 1050
MluNI TGGCCA 1 cut(s) 2451
MmeI TCCRAC 4 cut(s) 1666, 2099, 2313, 3431
Mox20I TGGCCA 1 cut(s) 2451
Mph1103I ATGCAT 2 cut(s) 1946, 3717
MroI TCCGGA 1 cut(s) 3221
MroNI GCCGGC 1 cut(s) 3941
MroXI GAANNNNTTC 2 cut(s) 2261, 3605
MscI TGGCCA 1 cut(s) 2451
MslI CAYNNNNRTG 4 cut(s) 1800, 2716, 3653, 4039
Msp20I TGGCCA 1 cut(s) 2451
MspA1I CMGCKG 5 cut(s) 1001, 1429, 2185, 2944, 3848
MspCI CTTAAG 1 cut(s) 527
MunI CAATTG 2 cut(s) 2088, 3963
Mva1269I GAATGC 4 cut(s) 1306, 2771, 3089, 3676
MvaI CCWGG 7 cut(s) 191, 314, 2054, 2562, 3202, 3243, 3896
MvnI CGCG 2 cut(s) 1052, 1228
NaeI GCCGGC 1 cut(s) 3943
NciI CCSGG 8 cut(s) 508, 1661, 1790, 1791, 2752, 2799, 3362, 3663
NgoMIV GCCGGC 1 cut(s) 3941
NlaIV GGNNCC 7 cut(s) 505, 1626, 2289, 3660, 3783, 3922, 4064
NmeAIII GCCGAG 1 cut(s) 4120
NmuCI GTSAC 4 cut(s) 1957, 1998, 3383, 3562
NsiI ATGCAT 2 cut(s) 1946, 3717
NspI RCATGY 7 cut(s) 1519, 1948, 2788, 2973, 3184, 3691, 3719
NspV TTCGAA 2 cut(s) 224, 1678
PaeI GCATGC 2 cut(s) 1948, 2973
PaeR7I CTCGAG 1 cut(s) 3634
PagI TCATGA 2 cut(s) 3310, 3801
PciI ACATGT 2 cut(s) 2784, 3687
PciSI GCTCTTC 1 cut(s) 1921
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 4 cut(s) 1306, 2771, 3089, 3676
PdiI GCCGGC 1 cut(s) 3943
PdmI GAANNNNTTC 2 cut(s) 2261, 3605
PflMI CCANNNNNTGG 2 cut(s) 1024, 2561
PfoI TCCNGGA 2 cut(s) 189, 2560
PpuMI RGGWCCY 2 cut(s) 1885, 3239
PscI ACATGT 2 cut(s) 2784, 3687
PshAI GACNNNNGTC 2 cut(s) 2737, 4134
PsiI TTATAA 1 cut(s) 3020
Psp124BI GAGCTC 2 cut(s) 600, 2403
Psp1406I AACGTT 1 cut(s) 219
Psp5II RGGWCCY 2 cut(s) 1885, 3239
Psp6I CCWGG 7 cut(s) 189, 312, 2052, 2560, 3200, 3241, 3894
PspFI CCCAGC 1 cut(s) 2944
PspGI CCWGG 7 cut(s) 189, 312, 2052, 2560, 3200, 3241, 3894
PspN4I GGNNCC 7 cut(s) 505, 1626, 2289, 3660, 3783, 3922, 4064
PspPI GGNCC 8 cut(s) 49, 1260, 1636, 1885, 3239, 3256, 3765, 4063
PspPPI RGGWCCY 2 cut(s) 1885, 3239
PspXI VCTCGAGB 1 cut(s) 3634
PstI CTGCAG 7 cut(s) 688, 1365, 1434, 3175, 3961, 3997, 4157
PstNI CAGNNNCTG 5 cut(s) 1204, 1360, 3337, 3454, 3938
PsuI RGATCY 3 cut(s) 97, 3495, 4149
PvuII CAGCTG 2 cut(s) 2185, 2944
RsaI GTAC 8 cut(s) 1530, 1644, 1895, 1968, 2572, 2888, 3788, 4124
RsaNI GTAC 8 cut(s) 1529, 1643, 1894, 1967, 2571, 2887, 3787, 4123
RseI CAYNNNNRTG 4 cut(s) 1800, 2716, 3653, 4039
SacI GAGCTC 2 cut(s) 600, 2403
SapI GCTCTTC 1 cut(s) 1921
Sau96I GGNCC 8 cut(s) 49, 1260, 1636, 1885, 3239, 3256, 3765, 4063
ScaI AGTACT 1 cut(s) 1895
SduI GDGCHC 6 cut(s) 600, 838, 2403, 3297, 3522, 3838
SexAI ACCWGGT 2 cut(s) 312, 3241
SfcI CTRYAG 7 cut(s) 684, 1361, 1430, 3171, 3957, 3993, 4153
Sfr274I CTCGAG 1 cut(s) 3634
SfuI TTCGAA 2 cut(s) 224, 1678
SinI GGWCC 6 cut(s) 49, 1636, 1885, 3239, 3765, 4063
SlaI CTCGAG 1 cut(s) 3634
SmaI CCCGGG 1 cut(s) 1791
SmiMI CAYNNNNRTG 4 cut(s) 1800, 2716, 3653, 4039
SmlI CTYRAG 8 cut(s) 92, 359, 527, 1309, 2879, 3634, 3824, 4003
SmoI CTYRAG 8 cut(s) 92, 359, 527, 1309, 2879, 3634, 3824, 4003
SphI GCATGC 2 cut(s) 1948, 2973
SspI AATATT 3 cut(s) 645, 1408, 2208
SspMI CTAG 4 cut(s) 1923, 2465, 3236, 3842
SstI GAGCTC 2 cut(s) 600, 2403
StyI CCWWGG 3 cut(s) 1394, 3426, 3499
TaiI ACGT 2 cut(s) 222, 330
TatI WGTACW 2 cut(s) 1893, 1966
TauI GCSGC 5 cut(s) 1001, 1429, 2439, 3848, 3926
TseFI GTSAC 4 cut(s) 1957, 1998, 3383, 3562
Tsp45I GTSAC 4 cut(s) 1957, 1998, 3383, 3562
TspGWI ACGGA 5 cut(s) 196, 753, 1463, 1617, 3275
TspMI CCCGGG 1 cut(s) 1789
Van91I CCANNNNNTGG 2 cut(s) 1024, 2561
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 6 cut(s) 49, 1636, 1885, 3239, 3765, 4063
XagI CCTNNNNNAGG 2 cut(s) 944, 3329
XapI RAATTY 5 cut(s) 655, 1435, 1760, 3231, 3698
XbaI TCTAGA 1 cut(s) 1922
XceI RCATGY 7 cut(s) 1519, 1948, 2788, 2973, 3184, 3691, 3719
XcmI CCANNNNNNNNNTGG 2 cut(s) 725, 2250
XhoI CTCGAG 1 cut(s) 3634
XmaI CCCGGG 1 cut(s) 1789
XmnI GAANNNNTTC 2 cut(s) 2261, 3605
XspI CTAG 4 cut(s) 1923, 2465, 3236, 3842
ZrmI AGTACT 1 cut(s) 1895
Zsp2I ATGCAT 2 cut(s) 1946, 3717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.